Dbfetch
ID MT267871; SV 1; linear; genomic DNA; STD; HUM; 5300 BP. XX AC MT267871; XX DT 09-OCT-2020 (Rel. 144, Created) DT 11-MAR-2021 (Rel. 144, Last updated, Version 3) XX DE Homo sapiens isolate 200317DQA1 MHC class II antigen (HLA-DQA1) gene, DE HLA-DQA1*01:12 allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5300 RA Fuerst D., Tsamadou C., Neuchel C., Mytilineos J.; RT ; RL Submitted (30-MAR-2020) to the INSDC. RL Transplant Immunology, Institute for Clinical Transfusion Medicine Ulm, RL Helmholtzstr.10, Ulm, BW 89077, Germany XX DR MD5; 1f339a8b159824a25ee9fe47e8943e30. XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5300 FT /organism="Homo sapiens" FT /isolate="200317DQA1" FT /mol_type="genomic DNA" FT /tissue_type="blood" FT /db_xref="taxon:9606" FT gene <1..>5300 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:12" FT mRNA join(<1..82,3846..4094,4508..4789,5146..>5300) FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:12" FT /product="MHC class II antigen" FT CDS join(1..82,3846..4094,4508..4789,5146..5300) FT /codon_start=1 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:12" FT /product="MHC class II antigen" FT /protein_id="QOC77832.1" FT /translation="MILNKALLLGALALTTMMSPCGGEGIVADHVASCGVNLYQFYGPS FT GQYTHEFDGDEEFYVDLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYN FT STAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSF FT LSKSDHSFFKISYLTFLPSADEIYDCKVQHWGLDQPLLKHWEPEIPAPMSELTETVVCA FT LGLSVGLVGIVVGTVFIIQGLRSVGASRHQGPL" XX SQ Sequence 5300 BP; 1542 A; 1119 C; 1163 G; 1476 T; 0 other; atgatcctaa acaaagctct gctgctgggg gccctcgctc tgaccaccat gatgagcccc 60 tgtggaggtg aaggcattgt gggtgagtgc atgagtgagg gatgttctct ggagctgaaa 120 aacagtaaat tgaaggaaaa gagataaagc gatttgcaga gaaactgtag agatttccta 180 agggcccttt cagtattaag acaattaaaa attatagctg ttcctccttc aggaaaccag 240 agccccaacc tactcttttt gttatctatg ctgttgtgtt cactaaggac gctattctgt 300 ttatattata ttcagtgact acagcctgga ggtctctatg tcgttccatc atgattgcct 360 caaaaattag tgaggtttcc atcagtggat aattttttat tattaaaaat ttatgaagtg 420 tcattctcaa atttccctga acaacttttg aagcttttcg gatgtctccg gtggtagatc 480 ttggggtcat tccatcaatt atgtactcta tagatattta aaatgttgcc cgtttctttc 540 tctcagactt actcacattt ccacatggga actggcacag gtggggagtg ggtaaaggag 600 tccagcaggc tgaatgcctt caacaatcat tttaccacat ggtcctcact tactctcagc 660 tgcctcatat gtgtcacctc acaagtaatc aaataaaatg ggcatgtggc taagctttgt 720 aaatagtgaa aacatgaatg tcaatttttt ttacatattt ctattacaga tatagcttca 780 catttctttt ctttagcaaa ataagggatc attttatttt aaaattgaga agtagaaaaa 840 attggtaaaa taaatcattt tattctcaaa ttatcaaccc aaattacctg ttcttcacct 900 catctaataa agtcctataa aaagaaaagt gggccagaca aggtggctca tgcctgtaat 960 cccagcactt tgggaggccg aggcaggagg atcatttgag cctgggagct tgagaccagc 1020 ctgggcaaca tagcaagacc tcatctctac aaaaaaagaa aaataaaaat tagccaggca 1080 tggtggtgtg tgcctgtggt gccagctact cagaaggctg ccgtgggagg accacttgag 1140 tccatgaggc ggaagctgca gtgagccatg gtggcaccac tacactccag ccagggcaac 1200 agagagagac gctgtctcaa aaagaaagag gaaagaaagc gaggaaggaa ggaaggaagg 1260 agaaggaagg aaggaaggaa aagaaaagaa aagggaaggg aggaaggaag gaaaaaagaa 1320 agacagaaag aaagaggaag gaaggaagaa aggaagcaca gattaattat ttggtctctt 1380 actctcctct gcctttgtcg tccatctctt tccacctctc ttgatgcatc cctttctccc 1440 tcttcccttt caggatccac ctctggctcc ctgctccttt atagagatgg acagtgggtt 1500 tgtaaaacaa aagttgaaaa gtcagatagt taaaagggga agtgaactgg aaggtacctt 1560 aaactttcac aactttatta accgtggctg ctcccattat gattttgttc ggcagtggaa 1620 gtttcacctg cttctccaga gcacttggcg tctttgttcc aaatttcctt tcttcaacct 1680 cacaccagag tgccctggtc aggcttggct cattcattag gcacaatgtg ggcagtgcag 1740 gggaccctcc atactgtaaa gccacatgag aaggttttaa ctcgttttaa aattagaaaa 1800 ataatggaat attagagccc aagaaaatgt tttaactttt aattcagcct agattatatt 1860 gtctttatac caattcagtc ataaaatata attttccata tttttgtgga ggaagaggcc 1920 catacaagca agaatgctca gggctcacat gtcagaatgc agccttggtc atgactgatc 1980 ctggccttcg tatggttctg ctacctgtgt gcctgcccgt cttccccaaa atctatgtgg 2040 tcctcgaata tagcaactgt cattcaatac acatgtttga gcacacagtg agctaagttt 2100 taaggattca aagatgaaaa gtcatgctgt cttccctgca gagggtgctc agattagtga 2160 tggaaacagt atggggtgca ggaaagcaga aggccattgc tgagcagggc agtggaccca 2220 gcagaggctg aaacaataca agtgacttgg ttccaggtgg gccagcaggg tgacgtcttc 2280 tagcaaaatt tggcacccaa gacaagtacc agaagaaaag aaagactgca tgtattccac 2340 atatattcat gtttgaacaa ggagtcaaga tttatggcaa ggataaggag gctttgttgg 2400 tgacctgtta agaccaacca gggcagtcat gctggatagg gaagaaggtg agctggaaga 2460 ggaacagaca aacttggaca gccagatgtt gagacggagg ggttggaggt cataatgtgg 2520 tcaaaaacat gttgatgaga ggactcagct acaaagttgt taacttaagc agaaacctca 2580 aggatggatt ttagaatttc tccaggaagt cctaaaagat aattccattt cagggagaaa 2640 aacaacagac cactgcaaag accagggaac atgaaaggat aatgtagttt gtcttgcttg 2700 gcagatactt ttgaaggatg ttggactgta aggctgtcga tatcctcctc agagaactta 2760 ctacagtaca ttgtatctgt tcccttacct acctgactct tccactattc agtttgttcc 2820 ttaatggtag accatgcctg attggtgttt tacacatctc cggctatgtc tgacacttgt 2880 ggatgctcag aaagtgggga aggaaggaaa gatacgatgg taaaaggctt acacatgtct 2940 tgacaaaaag tccagtttgg ctcatttggc tggagtcgta ctgcatggct gccattctgc 3000 tctggcatcc tcagacaagc acactgccca ttagaggaaa aagtgtgaat ataagtgttg 3060 agtcagaatg ctgtagacat ttagtaacct ccttcacagg aaaaaaaaaa ggtgggggga 3120 atgacagaaa tccaaaaact agtagagctt ccacttttca tttcagaaga aatcagttgc 3180 tctcctctaa ggaccattac tattaacaaa acagagacct tagaaggagg cattgtttat 3240 ttattatata ttttgtaatg ttattaccaa tcttgttata ctctttctta taccctacaa 3300 ttgttagcag aaattatttt aaattaataa gatcctgcat gcttttcctt taaaaaaaaa 3360 aaaaaagatc tctgtgtaga gtgtcctatt ctgagccagt cctgagagga aaggaagtat 3420 aatcaatttg ttattaacca atgaaagaat taagtgaaag ataaatctca ggaagcagag 3480 ggaagtaaac ctaatttctg actaagaaag ctaaatacta tgataactta ttcattcctt 3540 cttttgttca attacattat ttaatcataa gtccacgacg tgccaggcac tcaggaaata 3600 gtaaaaattg gacatgcgat attctgccct tgtgtagcgc acactagagt gggaaagaaa 3660 gtgcactttt aactggacaa ctaccaacac gaagagggga ggaagcaggg gctggaaatg 3720 tccacagact gtgccaaaaa atgaagccca taatatttga aagtcagttt cttccatcat 3780 tttgtgtatt aaggttcttt cttcccctgt tctccgcctt cctgcttgtc atcttcactc 3840 atcagctgac cacgttgcct cttgtggtgt aaacttgtac cagttttacg gtccctctgg 3900 ccagtacacc catgaatttg atggagatga ggagttctac gtggacctgg agaggaagga 3960 gactgcctgg cggtggcctg agttcagcaa atttggaggt tttgacccgc agggtgcact 4020 gagaaacatg gctgtggcaa aacacaactt gaacatcatg attaaacgct acaactctac 4080 cgctgctacc aatggtatgc gtccaccatt ctgcctctct ttacttaagc tatccctcca 4140 taccagggtt cattattttc ttcccaagag gtccccagat cttcttatgg caattgctga 4200 aattttatca tctcccatct ctaaaatcac atattcccat gtaatacaag ggtctttcca 4260 ttatgcattc agcaaatcct tctaggagag gtctcatcaa cctcctactt tattaaacat 4320 gcccacagag agaagggcac aggaataaag cagaggcaat gtgtcgttgc tcccaagcag 4380 aaggtaaata agacctcttt gactatcagg tggtgaaatg ctggtaggag ggctcttcca 4440 ggatgtaatg cagaacttca gggcagagct attcacactt cacaccagtg ctgtttcctc 4500 accacagagg ttcctgaggt cacagtgttt tccaagtctc ccgtgacact gggtcagccc 4560 aacaccctca tttgtcttgt ggacaacatc tttcctcctg tggtcaacat cacatggctg 4620 agcaatgggc agtcagtcac agaaggtgtt tctgagacca gcttcctctc caagagtgat 4680 cattccttct tcaagatcag ttacctcacc ttcctccctt ctgctgatga gatttatgac 4740 tgcaaggtgc agcactgggg cctggaccag cctcttctga aacactgggg taaggatgag 4800 tttcatcatt ttttgattct ttcttgtctg tcaagttcag aacttcctgc cttttactcc 4860 tatatccaaa aacttgtttt ccacacttca tgggtttctt ttctgtctct cttttttttt 4920 tgaaagaata aagcaaaaaa agcagagatt tattgaaaat gaaagtacac tctacaggat 4980 gggagtgggc ctgccacttc atggttttct aatgatagac ttcactcttc tccctaagct 5040 gggggccttg agtctttgca gagccaaccc tctaccccat cccatcccac acacatgcac 5100 atgagcaaac tctgcattct gacctcaaca acttcacttc cacagagcct gagattccag 5160 cccctatgtc agagctcaca gagactgtgg tctgcgccct ggggttgtct gtgggcctcg 5220 tgggcattgt ggtgggcact gtcttcatca tccaaggcct gcgttcagtt ggtgcttcca 5280 gacaccaagg gccattgtga 5300 //