Dbfetch
ID MT247717; SV 1; linear; genomic DNA; STD; HUM; 1689 BP.
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AC MT247717;
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DT 10-JUL-2020 (Rel. 144, Created)
DT 10-JUL-2020 (Rel. 144, Last updated, Version 1)
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DE Homo sapiens voucher JXZJ20180608006 MHC class I antigen (HLA-B) gene,
DE HLA-B*51-novel allele, complete cds.
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KW .
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OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
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RN [1]
RP 1-1689
RA Wang F., Zhang W., Wang W., Zhu F.;
RT "A novel HLA-B*51 allele by NGS and PCR-SBT";
RL Unpublished.
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RN [2]
RP 1-1689
RA Wang F., Zhang W., Wang W., Zhu F.;
RT ;
RL Submitted (25-MAR-2020) to the INSDC.
RL HLA laboratory, Transfusion institute, blood center of Zhejiang Province,
RL Wulin road 345, Hangzhou, Zhejiang 310006, China
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DR MD5; 2f93f1d3f279885bab90cad4384a0c59.
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CC ##Assembly-Data-START##
CC Assembly Method :: TypeStream Visual Software v. version
CC 1.2.0
CC Sequencing Technology :: IonTorrent
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1..1689
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /specimen_voucher="JXZJ20180608006"
FT /db_xref="taxon:9606"
FT gene <1..>1689
FT /gene="HLA-B"
FT /allele="HLA-B*51-novel"
FT mRNA join(<1..73,174..443,544..819,920..1195,1296..1412,
FT 1513..1545,1646..>1689)
FT /gene="HLA-B"
FT /allele="HLA-B*51-novel"
FT /product="MHC class I antigen"
FT CDS join(1..73,174..443,544..819,920..1195,1296..1412,
FT 1513..1545,1646..1689)
FT /codon_start=1
FT /gene="HLA-B"
FT /allele="HLA-B*51-novel"
FT /product="MHC class I antigen"
FT /protein_id="QLB38394.1"
FT /translation="MRVTAPRTVLLLLWGAVALTETWAGSHSMRYFYTAMSRPGRGEPR
FT FIAVGYVDDTQFVRFDSDAASPRTEPRAPWIEQEGPEYWDRNTQIFKTNTQTYRENLRI
FT ALRYYNQSEAGSHTWQTMYGCDVGPDGRLLRGHNQYAYDGKDYIALNEDLSSWTAADTA
FT AQITQRKWEAAREAEQLRAYLEGLCVEWLRRHLENGKETLQRADPPKTHVTHHPVSDHE
FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRY
FT TCHVQHEGLPKPLTLRWEPSSQSTIPIVGIVAGLAVLAVVVIGAVVATVMCRRKSSGGK
FT GGSYSQAASSDSAQGSDVSLTA"
FT variation 1324
FT /gene="HLA-B"
FT /replace="c"
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SQ Sequence 1689 BP; 225 A; 333 C; 357 G; 174 T; 600 other;
atgcgggtca cggcgccccg aaccgtcctc ctgctgctct ggggggcagt ggccctgacc 60
gagacctggg ccgnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 120
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnngctccca 180
ctccatgagg tatttctaca ccgccatgtc ccggcccggc cgcggggagc cccgcttcat 240
tgcagtgggc tacgtggacg acacccagtt cgtgaggttc gacagcgacg ccgcgagtcc 300
gaggacggag ccccgggcgc catggataga gcaggagggg ccggagtatt gggaccggaa 360
cacacagatc ttcaagacca acacacagac ttaccgagag aacctgcgga tcgcgctccg 420
ctactacaac cagagcgagg ccgnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 480
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 540
nnnggtctca cacttggcag acgatgtatg gctgcgacgt ggggccggac gggcgcctcc 600
tccgcgggca taaccagtac gcctacgacg gcaaagatta catcgccctg aacgaggacc 660
tgagctcctg gaccgcggcg gacaccgcgg ctcagatcac ccagcgcaag tgggaggcgg 720
cccgtgaggc ggagcagctg agagcctacc tggagggcct gtgcgtggag tggctccgca 780
gacacctgga gaacgggaag gagacgctgc agcgcgcggn nnnnnnnnnn nnnnnnnnnn 840
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 900
nnnnnnnnnn nnnnnnnnna ccccccaaag acacacgtga cccaccaccc cgtctctgac 960
catgaggcca ccctgaggtg ctgggccctg ggcttctacc ctgcggagat cacactgacc 1020
tggcagcggg atggcgagga ccaaactcag gacactgagc ttgtggagac cagaccagca 1080
ggagatagaa ccttccagaa gtgggcagct gtggtggtgc cttctggaga agagcagaga 1140
tacacatgcc atgtacagca tgaggggctg ccgaagcccc tcaccctgag atgggnnnnn 1200
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1260
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnagcca tcttcccagt ccaccatccc 1320
cattgtgggc attgttgctg gcctggctgt cctagcagtt gtggtcatcg gagctgtggt 1380
cgctactgtg atgtgtagga ggaagagctc agnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1440
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1500
nnnnnnnnnn nngtggaaaa ggagggagct actctcaggc tgcgtnnnnn nnnnnnnnnn 1560
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1620
nnnnnnnnnn nnnnnnnnnn nnnnnccagc gacagtgccc agggctctga tgtgtctctc 1680
acagcttga 1689
//