Dbfetch
ID MN966720; SV 1; linear; genomic DNA; STD; HUM; 6509 BP. XX AC MN966720; XX DT 06-FEB-2020 (Rel. 143, Created) DT 06-FEB-2020 (Rel. 143, Last updated, Version 1) XX DE Homo sapiens MHC class II antigen (HLA-DQB1) gene, HLA-DQB1*05:01:01:NEW DE allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-6509 RA Vianna R., Porto L.C.; RT ; RL Submitted (17-JAN-2020) to the INSDC. RL Laboratorio de Histocompatibilidade e Criopreservacao - HLA/UERJ, Rio de RL Janeiro State University, Av Marechal Rondon 381, Rio de Janeiro, RJ RL 20950-003, Brazil XX DR MD5; 1b09facf8447ed4568c50071f3454c06. XX CC ##Assembly-Data-START## CC Assembly Method :: Omixon HLA Twin v. 4.1.0; One Lambda CC TypeStream Visual v. 1.3.0 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6509 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="HLA-UERJ-103328" FT /db_xref="taxon:9606" FT gene <1..>6509 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:01:01:NEW" FT mRNA join(<1..149,1608..1877,4387..4668,5180..5290,6388..>6509) FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:01:01:NEW" FT /product="MHC class II antigen" FT exon <1..149 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:01:01:NEW" FT /number=1 FT 5'UTR <1..40 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:01:01:NEW" FT CDS join(41..149,1608..1877,4387..4668,5180..5290,6388..6401) FT /codon_start=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:01:01:NEW" FT /product="MHC class II antigen" FT /protein_id="QHR76954.1" FT /translation="MSWKKSLRIPGDLRVATVTLMLAILSSSLAEGRDSPEDFVYQFKG FT LCYFTNGTERVRGVTRHIYNREEYVRFDSDVGVYRAVTPQGRPVAEYWNSQKEVLEGAR FT ASVDRVCRHNYEVAYRGILQRRVEPTVTISPSRTEALNHHNLLICSVTDFYPSQIKVRW FT FRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRA FT QSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSRKGLLH" FT exon 1608..1877 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:01:01:NEW" FT /number=2 FT exon 4387..4668 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:01:01:NEW" FT /number=3 FT exon 5180..5290 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:01:01:NEW" FT /number=4 FT exon 5755..5778 FT /pseudo FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:01:01:NEW" FT /number=5 FT exon 6388..>6509 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:01:01:NEW" FT /number=6 FT 3'UTR 6402..>6509 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:01:01:NEW" XX SQ Sequence 6509 BP; 1642 A; 1488 C; 1605 G; 1774 T; 0 other; agctgtgttg actaccacta cttttccctt cgtctcaatt atgtcttgga agaagtcttt 60 gcggatcccc ggagaccttc gggtagcaac tgtcaccttg atgctggcga tcctgagctc 120 ctcactggct gagggcagag actctcccgg taagtgcagg aaagctgctc tccagagccg 180 ccactctggg aacaggcttt ccttgggctg gggtatgggg gatggtgatc tccatggtct 240 tggacacaat ctttcatcaa catttcctct tttttgggaa agaaagctat gttgcattcc 300 catttacctt ttagtgatga aatgaggaca atccaatccc catcctacag gtttaagcct 360 ggaagaggag gagagaggag aggaaagagg agataaagtg tacatttact accagtgata 420 ggacaaagtg agcatggggt tatttttgaa gatattaatt tctccaaaga cacagcagga 480 tttgtcattt cagcgtgccc caagactttg cctggactaa atattatgag attctgcagt 540 gggaaatgta aggcagcgat ggtgtctgta gtctccgtat ttgaggaaaa gtagtctgta 600 ttcctgactg actggagcgt ttgtggaggc aaaatcttgg tactgaggga agctgactgg 660 ctgaccacag acagggagtc ttcaggtttc actgatttat gggcaaatgg tgacttgagt 720 gggattcaga gacccgagtt gttggtggac taaatttagt agaaaggagg atgtaaagaa 780 gggaaataac acatattatg aaaccactca ctcagacaca gaacaatact ttacataaat 840 tctctctcac tccttctaac atcctgtgtg cagatatcat gattttcttt tacacaatta 900 tacttgtgat acggatattc tgcccaatat ggatatacac aacctggcca agctggtaac 960 tgccacagtt taattggaat ctagtttatc aaattcaaaa gcttatgctc tttccatgaa 1020 taaatatttc tatctaggac tcagagttgt aggtcctttc caacatagaa gggagtgaac 1080 ctcaacgggt cttgggaggg taaatccagg catgggaagg aaggtatttt acccagggac 1140 caagagaata cgcgtatcag aacgaggaca agattaattc ctggacctgt cgcatcattc 1200 ccttgaactc acaggtttat gtggataagt ttatctctga ggtttccagg agctgcatga 1260 aaaatgggat ttcatgcgag aacgccccga tccctctaag tgcagaggtc catgtaaaat 1320 cagcccgact gcctcttcgc tgggttcact ggctcaggca gggacagggc tttccgccct 1380 ttcctgcctg taggaaggcg gattcccgaa gcccccagag agggcgggca gggctgggca 1440 gagccgccgg gaggatccca ggtctggggc gccaggcacg ggctggcggg aactggaggt 1500 cgcgcgggcg gttccacagc tccggtccgg gtcagggcgg cggctggggg cgcagccggg 1560 ctagggccag gctggggcct gactgactgg cccgtgattc cccgcagagg atttcgtgta 1620 ccagtttaag ggcctgtgct acttcaccaa cgggacggag cgcgtgcggg gtgtgaccag 1680 acacatctat aaccgagagg agtacgtgcg cttcgacagc gacgtggggg tgtaccgggc 1740 agtgacgccg caggggcggc ctgttgccga gtactggaac agccagaagg aagtcctgga 1800 gggggcccgg gcgtcggtgg acagggtgtg cagacacaac tacgaggtgg cgtaccgcgg 1860 gatcctgcag aggagaggtg agcgtcgtcg cccctccgtg aggcccaccg ttggccggga 1920 cctctagtct ctgtgctggg aggggcgatg gggttgcggc ctctgaaacc tgagccccgt 1980 ttattccacc ccaggggaca ggagttggcg gcgtgagtgg tggggcaggt gcatcagatg 2040 ggcggggacc tagggcagag cagggagaca agcagagttg gccaggctgc ctagtgtccc 2100 cccagggtcc tcgtctgttg gcctcgtcct ccgctctgca cgtttctcgc ctcgtgcctt 2160 atgtgtttgc ctcctcgtgc cttacctttg ctaagcagtt ctctctgccc ccaatgccca 2220 ccctcttccc ctgcccgtcc gccccactag cactgcccca ttcagcaagg cccacgtgcg 2280 cagctcgcgc cgcaggaagc ttcaggcttg gcctggtgga gttagggctg ccccacaact 2340 gcgcccaggg catccagcaa ttacagttgc aaaataagat attttgactt tttggcttca 2400 aatcattatt catcgtaatt ctgttttcct aaatggctat cactaatggc ggagattttt 2460 gaggtgggag actgtttaaa ttattgcatg cttggtacct gacactttga ctggtatgtg 2520 gtatgagctc aatgatcttc tgttaaattc atgaataaat gtactcagct gcccatccac 2580 ttaggctcaa gaaaaaaaca gaggcttaca aatggacttt gttaattatt ttctatcatt 2640 ttgcctaatg ctttaaagta aactcttatt gactaggatc ttaatagaat ttgtgaatac 2700 aaagtctgag aaaaaaagtg tttgctaaaa ataaaaacaa tgcttgaatg acgttgtaag 2760 gcagagtttt aatttcttag acaagctgaa caaatggcac aatgcaaagg gcagaagttt 2820 gggaataaat aggttgaagc cattaaatta ttagataaaa atagtttcag gttgcttttg 2880 gcctgggttc tcccctccct ccatcactat ccacttcagg aataaacatt ctgaaagtca 2940 attttaccca ttcaggtagc acttatttct agacagttgc cttatcaaat accatatatg 3000 ttgtgccatt taatctcaca gttacctgtg cattagagat tagcatcacc acttgatata 3060 tcctaatatt ggtacaggat aaacacttta agtaatcagc ccacaattac tcaccaagac 3120 cttaagcctc ccaaagtata aaccattctt atgttcctca gtgtacatcc atagagtcta 3180 agggatgtaa ggccttgttg aagccagttt tgaccagaag cagcaatgag cctattcctg 3240 tttgttctcc atgttaatgg ggcattgaaa attcactgat taatcaatcc ctagtctgac 3300 cccagtgtta tctatgcagg ttcacaaaac ttttagatta ctttacaccc ccttgccttc 3360 ttttgactca cattctaatg ccagcaagta cttatatttt tgctatttca gttctatttc 3420 cataaaattt attttatcat cttttctcat aaaattgtgc cctctatttt actcccagtc 3480 tgtttaagat gaacaaatct tacaaggtca catagctgac tgtgatatca gttggactcc 3540 aggaaggaga acctaaagaa aagttcaagt ccaagcagaa accgtgattc cttccggatg 3600 atggctcaag agtgatgttt aactgggatg caacctgctg acctcagcaa atcctagtta 3660 tatgtatgtg ttcacattac aggctcatta gcccaggccg acctctgcat ggatctcaga 3720 atattttcta tggagaacat acatgataat gtctgatttc agaacaagaa agtaattctc 3780 aatagcaagg aaatggagta gggtagacag ctagtaacta aactcacttg tgcgttaaga 3840 agaaattaag gaaaaaagaa aataagagaa catattacta aataaagaaa cacacattaa 3900 atatttgcta tagtttcaca ctaagagaat aaaggaaatg caataaagtg gcctgaaagg 3960 taaaggatga gatgtgtaaa agaggcaggg aaagatgtat aataattttt tactatgagc 4020 agcaatctga gaagataaag gaattgagct gtgggcaaac atgatgtttg atcagtgtta 4080 tttgttttca aggcctgcct actttttttt tcaaatatta caaacttttg aaataacatt 4140 ctttttgttt tttactgtct gttactagat tgcatattct ataaatgaag ggaccatggt 4200 atgttgttta tctttggatt ctcagtgatt gtcaaattta tatttgttga aggaacctta 4260 atccaagact tggactccag gtatctttcc actctggttc caaggaggga cccttcctca 4320 tggtggacgt gctgtgtggt ctcacgtctc actcctgtgt cttttcctgt ctgttactgc 4380 ccttagtgga gcccacagtg accatctccc catccaggac agaggccctc aaccaccaca 4440 acctgctgat ctgctcggtg acagatttct atccaagcca gatcaaagtc cggtggtttc 4500 ggaatgatca ggaggagaca gccggcgttg tgtccacccc cctcattagg aacggtgact 4560 ggaccttcca gatcctggtg atgctggaaa tgactcccca gcgtggagat gtctacacct 4620 gccacgtgga gcaccccagc ctccagagcc ccatcaccgt ggagtggcgt aaggagatat 4680 tgagtttctg ttattatggg ccccacaaga caaagagctc cttctgaccc attccttccc 4740 atctcttatc cctgatgtca ctactgagct gggaatcaca ggagactaga gcacctctag 4800 ttccatggcg agtgcatcag aagaatcctg atctcatcac ctttccagat gctagggaaa 4860 ttactctaca tactgttgct ctggatccca gtcctgatag ctctgacgga ctgattctta 4920 gggctggtga ttgggatctt agggtctaag gttatggatg agttcctgag gagcagagat 4980 ttgcttcccc actctctcac ctacccactg tatccaagga cctattgtct ggcctttccc 5040 ctccttaggg gtggtctgaa tggagagcta ggttcctttg atgccttcac ctcctgcacc 5100 tcagactgga cttcaactcc tcagcaggga tgctatgggg tgtggggaca aacactgaca 5160 ctcaggttct gctttttagg ggctcagtct gaatctgccc agagcaagat gctgagtggc 5220 gttggaggct tcgtgctggg gctgatcttc cttgggcttg gccttatcat ccgtcaaagg 5280 agtcggaaag gtgaggaacc ccaggggaaa aggggaagat gggctgtgac ccagaccctc 5340 tgttcagagt ggtcctgtct gtagattagc tctttcctcc tgcccctgag aggaagtgcg 5400 aggagacagg acaagatggg aggaggcatt ggaatctgat tttactggtt gaaaggtagc 5460 gctgtcacag agctgactga tagagcttat tccagggcat ccttactatt catcattgtc 5520 tcactggctc ctttccaaaa gcttcctcca ttaagagggt cagagcctca gcctcctttc 5580 tttctggtga caatttcctt tgttttaggg gattttaaat tagggtgctg aaggcctgga 5640 agaacatggg tgggaagaga atgtaactct aagtcatgtg tgtcattttc ctttggggtg 5700 agagagtggc tgtttgtgta atgagacctt tctctgcata acttcctttt gtaagacctc 5760 aagggcctcc accagcaggt aatatttcag ccatgatcca gtgtggggag gcacaggtat 5820 aagagggaag agcatgagct gagtgtacct gaccacagtg gtccatgttc gtggcctatt 5880 tgctgctatg aggatcaaga cttaggggag aagtttgcca gtttctagga atctccagac 5940 attgttcccc agaaccaagc cttaactttg gtggcatctt cttgtgaaat gtggagccag 6000 aaccacagct taaatgttag acactaggat gatgcccact ttgtgccaca tgatggtggc 6060 tactgcctgt aggcattttc cagtgactga aagaggctgc tagtggtcgg gatgagatat 6120 catccaattt cctaaaaaga ctgaaccctt catattcccc agaagaataa cagctgttcc 6180 ccacctccca cacatctgca tcaagctgaa gttctgtgtc ctcgtgagct gatttcacct 6240 ttgcacagat cttgggggag gtgatgacaa tacaccctgg acctcaactt tctctgtctg 6300 aagctgcagg gggcccctga agggtggggg agatggcagg cccaccagga taccctgtgc 6360 tgatcaatcc tcttctctct tctccagggc ttctgcactg actcctgaga ctgttttaac 6420 taagactggt tatcactctt ctgtgatgcc tgcttgtccc tgcccagaat tcccagctgc 6480 ctgtgtcagc ttgtccccct gagatcaaa 6509 //