Dbfetch
ID MN964892; SV 1; linear; genomic DNA; STD; HUM; 6554 BP. XX AC MN964892; XX DT 03-JUN-2020 (Rel. 144, Created) DT 03-JUN-2020 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens MHC class II antigen (HLA-DQB1) gene, HLA-DQB1*03var allele, DE partial cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-6554 RA Gomez-Massa E.; RT ; RL Submitted (20-JAN-2020) to the INSDC. RL Histocompatibility and Immunogenetics Laboratory, Blood and Tissue Bank, RL Edifici Frederic Duran i Jorda, Passeig del Taulat 106-116, Barcelona RL 08005, Spain XX DR MD5; 6f8ad7115a278b38bc715cb9a3fb555d. XX CC ##Assembly-Data-START## CC Assembly Method :: GenDx (NGS engine) v. IMGT 3.38.0. CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6554 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <1..>6554 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03var" FT mRNA join(<1..177,1626..1895,4525..4806,5324..>5434) FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03var" FT /product="MHC class II antigen" FT 5'UTR <1..68 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03var" FT CDS join(69..177,1626..1895,4525..4806,5324..>5434) FT /codon_start=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03var" FT /product="MHC class II antigen" FT /protein_id="QKE11446.1" FT /translation="MSWKKALRIPGGLRAATVTLMLAMLSTPVAEGRDSPEDFVYQFKA FT MCYFTNGTERVRYVTRYIYNREEYARFDSDVEVYRAVTPLGPPDAEYWNSQKEVLERTR FT AELDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRW FT FRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQHGDVYTCHVEHPSLQNPITVEWRA FT QSESVQSKMLSGIGGFVLGLIFLGLGLIIHHRSQK" XX SQ Sequence 6554 BP; 1676 A; 1509 C; 1596 G; 1773 T; 0 other; gccaggtaca tcagatccat caggtccgag ctgtgttgac taccactact tttcccttcg 60 tctcaattat gtcttggaaa aaggctttgc ggatccccgg aggccttcgg gcagcaactg 120 ttaccttgat gctggcgatg ctgagcaccc cagtggctga gggcagagac tctcccggta 180 agtgcagggc agctgctctc cagagccgcc actctgggaa cagactctcc ttgggctggg 240 gtatggggat ggtgatctcg attatctcag acacaatctt tatcaatatt tcctctgttt 300 tgggaaagag agctatgttg cattcccatt tatcttttaa tgatgaggtg aggacaatcc 360 aatcccatcc tacagactta agcctggaag aggagagagg agagaaaaga ggagacaaag 420 tgttcattta ctaccagtga taggacaaag tgagcatggg gttatttttg aagatatgaa 480 tttctccaaa gacacagcat gatttgtcat ttaggcgtgc cccaagactg cctggactaa 540 ctattatgag atcctgcact gggaaatgta aggcagcaat ggtgtctgta gtccccgtat 600 ttggggaaaa ggtgtctgta ttcctgactc agtggagcgt ttgtggaggc aaaatcttgg 660 tactgaggga agctgactgg ctgaccacag acagggagtc ttcaggtttc actgatttat 720 gggcaaatgg tgacctgagt gggattcaga gacccgagtt gatggtggac taaatttagt 780 agaaaggagg atgtaaagaa gagaaattat acatactgtg aaaccactca tttcagacac 840 agaacaatac tttacataaa ttctctctca ctccttctaa catcctgtgt gtagatatca 900 tgattttctt ttacacaatt atacttgtga catggatatt ctgttacgta acctgcccga 960 gctggtgact gccacagttt aatgggattc tagtttatca aattcaaaag cttgtgctct 1020 ttcagtgaat aaacgtttct ttctaggact cagagatcta ggactccctt ctttctaaca 1080 cagaagtgag tgaacctcac agggcacttg ggagggtaaa tccaggcatg ggaaggaagg 1140 tattttaccc agggaccaag agaataggca tatcaaaaga ggacaggttt aattcctgga 1200 cctgtctcgt cattcccttg aactctcagg tttatgtgga taactttatc tctgaggtac 1260 ccaggagctc catggaaaat gggatttcat gcgagaacgc cctgatccct ctaagtgcag 1320 aggtccatgc aaaatcaacc cgactgcctc ttcgcttggt tcacaggccc agccagacag 1380 ggacagggct ttcctccctt tcctgcctgt aggaaggcgg attcccgaag acccccgaga 1440 gggcgggcag ggctgggcag agcccccggg aggatcccag gtctgcagcg cgaggcacgg 1500 gccggcggga actggaggtc gcgcgggcgg ttccacagct ccgggccggg tcagggcggc 1560 ggctgcgggg tggccgggct ggggccgggc cggggccgga ctgaccggcc ggtgattccc 1620 cgcagaggat ttcgtgtacc agtttaaggc catgtgctac ttcaccaacg ggacggagcg 1680 cgtgcgttat gtgaccagat acatctataa ccgagaggag tacgcacgct tcgacagcga 1740 cgtggaggtg taccgggcgg tgacgccgct ggggccgcct gacgccgagt actggaacag 1800 ccagaaggaa gtcctggaga ggacccgggc ggagttggac acggtgtgca gacacaacta 1860 ccagttggag ctccgcacga ccttgcagcg gcgaggtgag cgtcgtcgcc ccgctgcgag 1920 gcccactctt ggccggggcc ccgagtctct gcgctaggag ggacgagggg ggcgaagcct 1980 ctggaacctg agccgcgttc gttccacccc aggggacagg agttggcggc gtgggtggtg 2040 gggcaggtgc ataggagggg cagggaccta ggggcagagc aggggtacag gtagagttgg 2100 tcaaactgcc tagttttgcc ccagccttcc cgtccgtcag cctcgccctc tgctgtgcac 2160 gttctcgcct cgtgccttat gcgtttgcct cctcgtgcct tgcctttgct aagcagtcct 2220 ctctgccccc aatttctgcc ctcttcccct gcccgcccgc cccgctagca ctgccccacc 2280 cagcaaggtc cacgtgcact gctcgcgccg caggaagctt caggcttggc ctggtggagt 2340 tagggctgct ccacaactgt gcgcagggca tccagcaatt acagttgtga aataagatat 2400 tttgactttt ggcttcaaat tattattcat cgtaattccg ttttcttaaa tggctctcat 2460 tcatggcgga gctctttgag gtgagagtgt tttaatcatt ttatggccgg tacctgacac 2520 attgactggc atgtggtata agctcaataa tcttctgtta aattaatgaa taaatgtgct 2580 cagctgccaa tccacttagg ctcaagaaaa accagaggta aacagaacct taaaaatgga 2640 cttttattaa ttattttcta tcattttgct taattcttta aagtaaactc ttattgactt 2700 ggatctaaat agtttgtgaa tacaaagtct gaggaaaaaa gtgtttgcta aaaataaaaa 2760 caacacttga atgatgtttg taaggcagtt ttaatttctt agaaaagctg aacaaatggc 2820 acaatgcaaa gagcagaagt tttggaataa atagattgaa gccattaaat tattggataa 2880 aaatagtttc aggttgcttt tggcctaggt tctcccctcc ccccatcact atccacttca 2940 ggaataaaca ttctgaaagt taattttacc catatagtga gcacttattt ctaagttgcc 3000 ttatcaaata ccatctatgt tatgtcattt aatctcgcag ttgcctgtgc attagagatt 3060 agcatcacca ctttatatat cctaatatta gtacatgata aacactttaa gtaatcagcc 3120 cacaagtact caccaagacc ttaagcctcc caaagtacac aacattctta cgttcctcac 3180 tacacatctg tagagtcaaa gggacataaa gccttgttaa agccagtttt gaccagaagc 3240 agcaatggtc tcttcctgtt tgatctccat gttaatggga caaaatgata ctttcaaggc 3300 attgaaaatt tatgattaat caatcaaatt tatgattaat caatccctag tctgactcca 3360 gtgagattca caaaactttc agtttacttt atactccctt gccttctttt gactcacatc 3420 atagtgccag caagtactta tatttttgct atttcagttc tatttccata aaatttattt 3480 tatcatcttt tctcataaat ttgtgccctc tatttttact cccaatctgt gtaagatgaa 3540 caaatcttat aagaccacat agctgactgt gatttcaggt ggactccagg aaggagaacc 3600 aaagaaaact ttcagtcttt ttaagatgaa caaatcttgt aagtccccac atagctgact 3660 gtgatttcag gtggactcca ggaaggagaa ccaaagaaaa gttcaagtcc aagcagaaac 3720 cgtgattcct tccggatgat ggctcatgag tgccatttaa ttggggtgcc acctgctgtc 3780 ctcagcaaat cccagctata tgtatatgtt cgcattacag gctcattaac ctaggctgac 3840 ctctgcaagg atctcagaat attttctaca gagaacatac atgataatat ctgattttag 3900 gacaaaaaag taattctcaa tagcaaggga atggagtagg gtagacagct agtaattaaa 3960 ctcacttgtg tgttaaaaat aaattaagga aaaaagaaaa tgagagaaca tattactaaa 4020 taaagaaagc atacattaaa tatttactat agttttacac taagagaata aaggaaatgc 4080 aataaagtgg cctgaaaggt aaaggatgag atgtgtaaaa gaggcgggga aagatgtgtc 4140 attttttttt tactatgagc agcaatctga gaagataaag gaatcgagtt atgggcagac 4200 atgatgtttg atcagtgtta tttgttttca aggcctgcct actttttttt caaatattac 4260 aaacttttga agtcacattc tttttgtttt ttgctgtctg ttactagatc gcacattctg 4320 taaaggcagg gaccatggta tgttgtttat ctttggattc tcagtgattg tcatatttat 4380 gtttgttgaa tgaatcttaa tccaagactt gggctccagg tatctttcca ttctggttcc 4440 aaggagggac cttcctcaca gcaggcgtgc tgtgtggtct cacatctcac tcctatatct 4500 ttccctgtct gttactgccc tcagtggagc ccacagtgac catctcccca tccaggacag 4560 aggccctcaa ccaccacaac ctgctggtct gctcagtgac agatttctat ccagcccaga 4620 tcaaagtccg gtggtttcgg aatgaccagg aggagacaac cggcgttgtg tccacccccc 4680 ttattaggaa cggtgactgg accttccaga tcctggtgat gctggaaatg actccccagc 4740 atggagacgt ctacacctgc cacgtggagc accccagcct ccagaacccc atcaccgtgg 4800 agtggcgtaa ggggatattg agtttctgtt actatgggcc ccacaagaca aagggcagag 4860 ctcattctga cccatccctt cccatctctt atccctgatg tcactactga gctgggaatc 4920 acaggagact agagcacttc ttcctccatg gcaagtgcat cagaagaatc ctgatctcat 4980 cacctttcca gatgctaggg aaattactct acatactgtt tctctggatc ccagtcctga 5040 tagctcggag ggactgatca ttagggctgg tgactgggat cttagggttt aaggttatgg 5100 atgagctcct gaggagtgga gatctgcttc tccactctct cacctactca ctgtacccaa 5160 ggacctattg gctggccttt cccctccctt aggggtggtc tgaatggagg actagtttcc 5220 tttgacgcct tcacctcctg aatctcagac tggacttcag ctcctcagca gggatgctat 5280 ggggtgtggg gacaaacact gacactcagg ctctgcttct taggggctca gtctgaatct 5340 gtccagagca agatgctgag tggcattgga ggcttcgtgc tggggctcat cttcctcggg 5400 ctgggcctta ttatccatca caggagtcag aaaggtgagg aaccccaagg gaaaagggga 5460 agatgggctg tgacccagac cctctgttca gagaggtcct gtctctagat gtggctcttt 5520 cctcctgacc ccgagaggaa gaaagctgag ctggaggtgg gaggagacag gacaagattg 5580 gaggaggcat tggaatctga ttttactagt tgaaaggtag ccctgtcaca cagctcactg 5640 atagagctta ttgaaggaca tccttacctt tcatcattgt ctcattggct cctttccaaa 5700 agcttcctcc attaagaggg tcagagcctt ggcctccttg ccttctagtg acaatttcct 5760 ttgttttagg ggattttaaa ttagggtgct taaggccttg aaggacatgg gtgggaagag 5820 aatataactc taattaagtc acatgtgtca ttttccattg gggtgagaga gtggctgttt 5880 gtgtaatgag acctttctct gcataacttc cttttgtaag acctcaaggg cctccaccag 5940 caggtaatat ttcagccgtg atccagtgtg gggagggcac agatgtaaga gggaagagca 6000 tgagctgagt gtacctgacc acagtggtct ccgttcatgg tatatttgct gctatgagga 6060 tcaagactta ggggcgaagt ttgccagttt ctaggaatct ccagaggctg ttccccagaa 6120 ccaagcctta actttggtgg catcttcctg tgaaatgtga agccagaacc acagcttaaa 6180 tgttagacac taggatgatg cccactttgt gccacatgtt ggtggctact gcctgtaggc 6240 attttccagt gactgaaaga ggctgctagt ggtagggatg aggtatcatc caatttccta 6300 aaaagaccga acccttcata ttccccagaa gagtaacagc tgttccccca cctccctcac 6360 atctgcatca agctgaagtt ctgtgtcttc atgagctgat ttcacctttg cacagatctt 6420 gggggaggtg atgacaatac actctggacc tcagctttgt ctgtctgaag ctgcaggggg 6480 cccctgaggg gtgggggaga tggcaggccc accagcgtac cctgtgctga tcatccctct 6540 tctctcttct ccag 6554 //