Dbfetch
ID MN954679; SV 1; linear; genomic DNA; STD; HUM; 6196 BP. XX AC MN954679; XX DT 30-MAY-2020 (Rel. 144, Created) DT 30-MAY-2020 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens MHC class II antigen (HLA-DQA1) gene, HLA-DQA1*03:03:01:NEW DE allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-6196 RA Vianna R., Porto L.C.; RT ; RL Submitted (15-JAN-2020) to the INSDC. RL Laboratorio de Histocompatibilidade e Criopreservacao - HLA/UERJ, Rio de RL Janeiro State University, Av Marechal Rondon 381, Rio de Janeiro, RJ RL 20950-003, Brazil XX DR MD5; c5c078d943f7a4be9e0d693ead5c1a66. XX CC ##Assembly-Data-START## CC Assembly Method :: Omixon HLA Twin v. 4.1.0; One Lambda CC TypeStream Visual v. 1.3.0 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6196 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="HLA-UERJ-103260" FT /db_xref="taxon:9606" FT gene <285..>5541 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*03:03:01:NEW" FT mRNA join(<285..366,4064..4312,4758..5039,5387..>5541) FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*03:03:01:NEW" FT /product="MHC class II antigen" FT CDS join(285..366,4064..4312,4758..5039,5387..5541) FT /codon_start=1 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*03:03:01:NEW" FT /product="MHC class II antigen" FT /protein_id="QJX19979.1" FT /translation="MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPS FT GQYSHEFDGDEEFYVDLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSN FT STAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSF FT LSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCA FT LGLSVGLVGIVVGTVLIIRGLRSVGASRHQGPL" XX SQ Sequence 6196 BP; 1770 A; 1326 C; 1319 G; 1781 T; 0 other; aagattccaa tttagtgtcc tccctctgtt catagaacaa ttcctcaagt ccactctgag 60 tagaggctgc atcacaacaa ggggattgcc ctgtctcctt ccagggctct taatacaaac 120 tcttcagcta gtaactgaga tgtcaccatg ggggattttt ctaattggcc aaaacctgac 180 ctggcagggt ttggtttggg tgtcttcaga tttccttgtc ttgaggccct cacaattgct 240 ctacagctca gaacagcaac tgctgaggct gccttgggaa gaggatgatc ctaaacaaag 300 ctctgatgct gggggccctc gccctgacca ccgtgatgag cccttgtgga ggtgaagaca 360 ttgtgggtga gtgcatgagt gaggaatgtt ctctggagct gaaaaacagt aaattgaagg 420 aaaagagaga aagcgatttg cagagaaatt gtagagattt cctaagaccc ctttcagtat 480 taagagaatt aaaaattata gctgttcctc cttcaggaaa ccagagcccc aacctactct 540 ttttgttatg tatgcttttg tgttcactaa ggatgctatt ctgtttatat tatattcagt 600 gacaacagcc tggaggtctc tatgtcgttc cgtcatgatt gcctcaaaaa ttagtgaagt 660 ttccatcagt ggataatttt ttattattaa aaatgtatga agtgtcattc tcaaatttcc 720 ctgaacaact tttgaagctt ttcgtatgtc tcctgtagta gatcttgggg tcgttccatc 780 aattatatac tctatagata ttaaaaaagt tgcccgtttc tttctctcag acttactcac 840 atttccacat gggaactggc acaggtgggg agtgggtaaa ggagtccagc aggctgaatg 900 ccttcaacaa tcattttacc acatggtcct cacttactct cagctgcctc atatgtgtca 960 cctcacaaat aatcaaataa aatgggcatg tagctaagct ttgtaaatag tgaaaacatg 1020 gatgtcaatt gtttttacat atttctatta caggtatagc ttcacatttt tctttagcaa 1080 aataagggat ccttttagtt taaaattgag aagtagaaaa aattggtaaa ttaaatcatt 1140 ttattctcaa attatcaacc caaattacct gttcttcacc tcatctaata aagtcctata 1200 aaaagaaaag tgggccagac atggtggctc atgcctgtaa tcccagcact ttgggaggcc 1260 gaagcaggag gatcatttga gcctgggagt ttgagaccag cctgggcaac atagcaagac 1320 ctcatctcta ccaaaaaata aaataaaaat tagccaggtg tggtggtgca tgcctgtggt 1380 gccagctact cagaaggctg cagtgggagg agcacttgag tccaggaggt ggaagctgca 1440 gtgagccatg atggcaccac tacactccag ccagggcaac agagagagac tctgtctcaa 1500 aaagaaagag gaaagaaaga gagaaaggaa ggaaagaagg aaagaaggaa ggaaggaagg 1560 agaaagggaa gggaggaagg aaaaaagaaa gaaagaaaga aaacggaagg aaggaagcac 1620 agattaatta tttggtctct ttgtctcctc tgcctttgtc gtccatctct tcccacctct 1680 cttcatgcat tcctttctcc ctcttccctt tcaggatcca tctctgactc cctgctcctt 1740 tatagagatg gacagtgagt ttgtaaaaca aaagttgaaa agtcagatag ttaaaagggg 1800 aagtgaactg gaaggtactc taaactttca caaccttatt aaccatggct gctcccattc 1860 tgattttgtt cagcagtgga agtttcaccc gctcctccag agcgcttggc ttctttgttc 1920 caaatttcct ttcttcaacc tcacaccaga gtgccctggt caggctcagc tcatccatta 1980 ggcacaatgt gggcagtgca ggggaccctc cagactgtaa agccacatga gaatgtttta 2040 actcctttta aaattataaa aaaatgaaat tgtagagcct aagaaaatgt tttaactttt 2100 aattcagcct agattatatt gtctttatac caattcagtc ataaaatata gttttccata 2160 tttttatgga ggaaggcgtc cacacaagca agagtgcttg gggctcacat gtcagaacgc 2220 aaccctgatc atggctgatc ctggccttcg tgtggttctg ctaactatgt gcctgtcagt 2280 cttccccaaa atctatgtgg tcctcaaata taacaactgt cattcaatac acatgtttga 2340 gcacccagtg agctaagttt taaggattca aagatgaaaa gtcatgctgt ctcctctgca 2400 aagggtgctc agactagtga tggaaacagt atgggatgaa agaaagcaga aggccattgc 2460 tgagcaggca gtggactcag cagaggctga aactatacaa gtgacttggt tccagctggg 2520 ccagcaggat aaccagatga aaagaaggat tgcatatatt ccatatatat ttatgtttga 2580 acaaagagtc aaggtttatt gcaaggataa ggaggttttg ttggtggcct gttaagacca 2640 tccagggtgg tcatactgga tagggaagaa ggtgagctgg aagaggaaca gacaaacttg 2700 gatggccaga tgttgagatg gaggagatgg aggtcataac gtggtcaaaa acatgttgat 2760 gagaggactt agctacaaag ttgttaactt aagcagaaac ctcaaggatt gattttatga 2820 tttctccagg aagtcctaaa agttaatttc atttcaggga gaaaaacaac agaccactgc 2880 aaagaccagg aacatgaaag gataatgtag tttggtttgc ttggcagata cttgtgaaag 2940 atgttggact gtaaggctgt caatatcctc ctcgcagaac ttactacagt acattgtatc 3000 tgctccctta cctacctgac tctcccacta ttcagtttgt tccttaatgg tagaccatgc 3060 ctgatcggtg ttttacacat cccctgctat gtctgatact tgtggatgct cagaaagtgg 3120 ggaaggaagg aaagatacga tggtaaaagg cttacacatg tcttgagcag aatgttcagt 3180 ttggctcatt tggctggagt catactgcat ggctgccatt ctgctctggc atcctcagag 3240 aagcacactg cccattaaag gaaaaagggt gaatacaaat gttgagtcag aacactgcag 3300 acatttagta acctccttca gaggaaaaaa aaaggtgggg ggaatgacag aaatccaaaa 3360 actagtagag cttccacttt ttcatttcag aagaaatcag ttactctcct ctaaggacca 3420 ttactattaa caaaacagag accttagaag gaagcattat ttacttatca tatattttgt 3480 aatgttatta cccttcttgt tatactcttt cttataccct accattgtta gcagaaatta 3540 ttttaaatta ataagatcct gcatgctttt cctttttcta aaaaaagaaa gatctctgtg 3600 tagaatgtcc tgttctgagc cagtcctgag aggaaaggaa gtataatcaa tttgttatta 3660 actgatgaaa gaattaagtg aaagataaac cttaggaagc agagggaagt taatctatga 3720 ctaagaaagt taagtactct gataactcat tcattccttc ttttgttcat ttacattatt 3780 taatcacaag tctatgatgt gccaggcact caggaaatag tgaaaattgg acacgcgata 3840 ttctgccctt gtgtagcaca caccgtagtg ggaaagaaag tgcactttta accggacaac 3900 tatcaacacg aagaggggag gaagcagggg ctggaaatgt ccacagactt tgccaaagac 3960 aaagcccata atatctgaaa gtcagtttct tccatcattt tgtgtattaa ggttctttat 4020 tcccctgttc tctgccttcc tgcttgtcat cttcactcat cagctgacca tgttgcctct 4080 tacggtgtaa acttgtacca gtcttatggt ccctctgggc agtacagcca tgaatttgat 4140 ggagacgagg agttctatgt ggacctggag aggaaggaga ctgtctggca gttgcctctg 4200 ttccgcagat ttagaagatt tgacccgcaa tttgcactga caaacatcgc tgtgctaaaa 4260 cataacttga acatcgtgat taaacgctcc aactctaccg ctgctaccaa tggtatgtgt 4320 ccaccattct gcctttcttt actgatttat ccctttatac caagtttcat tattttcttt 4380 ccaagaggtc cccagatctt ctcatggcaa ttgctgaaat tttatcattt ctcatctcta 4440 aaatcacata ttccaatgta atacaagggt ctttccatta tgcattcatt aaatccttct 4500 aggagaggtc tcatcaacct tctactttat taaacatgcc cacagagaga agggcacagg 4560 agtaaagcag aggcaatatg tcgttgctcc caaatgtgtc gttacaatgt gtcgttgctt 4620 acccaaagag gtaaataagg cctctttgac cagcaggaga ggaaatgctg gtaggaagac 4680 tcttccagga tgtaatgcag aagaagctca gggcagagct attcacactt tacaccagtg 4740 ctgtttcctc accatagagg ttcctgaggt cacagtgttt tccaagtctc ccgtgacact 4800 gggtcagccc aacaccctca tctgtcttgt ggacaacatc tttcctcctg tggtcaacat 4860 cacctggctg agcaatgggc actcagtcac agaaggtgtt tctgagacca gcttcctctc 4920 caagagtgat cattccttct tcaagatcag ttacctcacc ttcctccctt ctgatgatga 4980 gatttatgac tgcaaggtgg agcactgggg cctggatgag cctcttctga aacactgggg 5040 taaggatgag tttcaccatt ttttgatgct ttcttgtctg tcaagttcag aacttcctgc 5100 cttttactct atatcccaaa acttgttttc cacacttcat gagtttcttt tgtctttttt 5160 ttgaaagaat taagcaacaa aagcacagat ttattaaaaa agaaagtaca ctccacaggg 5220 tgggagcagg cctgccactt catgggtttc taataacaga cttcactctc ctccctaagc 5280 tgggggcctt gagtctttgc agagccaacc ctctacccca tcccatccca cacacatgca 5340 catgagcaaa ctctgcattc tgacctcaac aacttcactt ccacagagcc tgagattcca 5400 acacctatgt cagagctcac agagactgtg gtctgcgccc tggggttgtc tgtgggcctc 5460 gtgggcattg tggtggggac cgtcttgatc atccgaggcc tgcgttcagt tggtgcttcc 5520 agacaccaag ggcccttgtg aatcccatcc tgaaaaggaa ggtaagattg agatttgtta 5580 gagctgaagc tgcaggaagg aaagtgggag gaggctgtgg acatgaatgt ggttgaaagt 5640 tgtaggggaa ttgggaagtg gcatgatgat gacacaggag cccccttgga cccatcgatc 5700 tcatgtctgt cctgttgcag gtgcatcacc atctacagca gcggaagagt ggacttgcta 5760 catgacctag cactattctc tggcccgatt tatcataccc tttttctcct gcaaatgttt 5820 ctcctcttac cttttctctg cttttttttt cttaagcttc tgtatcccct cagagctcac 5880 aaatgccttt gaattctttc cctgacctcc tgattttttt ttcttttctc aggtgttacc 5940 tactaagaga tgcctggggt aagccgccca gctacctaat tcctcagtaa catcgatcta 6000 aaatctccat ggaagcaata aattcccttt aagagatcta tgtcaaattt ttctatcttt 6060 catccggggc tgactgaacc tatggctaag aattgtgaca ctctcatgtt tcaagccaat 6120 ttcatctcat ttcccagatc atatttcata tccagtaaca cagaagcaac caagtacaat 6180 atagcctgat aatatg 6196 //