Dbfetch
ID MN905949; SV 1; linear; genomic DNA; STD; HUM; 7005 BP. XX AC MN905949; XX DT 06-FEB-2020 (Rel. 143, Created) DT 06-FEB-2020 (Rel. 143, Last updated, Version 1) XX DE Homo sapiens MHC class II antigen (HLA-DQB1) gene, HLA-DQB1*06:03:01:02 DE allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-7005 RA Lazaro A., Hou L., Enriquez E., Persaud M., Hurley C.K.; RT ; RL Submitted (06-JAN-2020) to the INSDC. RL Oncology, Georgetown University, 11333 Woodglen Dr, Rockville, MD 20852, RL USA XX DR MD5; 17bcf66daab8975c0bddc859cb8abce1. XX CC ##Assembly-Data-START## CC Assembly Method :: Assign Tru Sight v. HLA 2.1; GenDex v. CC 2.15.0.15000; Sequencher v. 5.4.6 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..7005 FT /organism="Homo sapiens" FT /chromosome="6" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <428..>6800 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:03:01:02" FT mRNA join(<428..536,1968..2237,4788..5069,5579..5689, FT 6787..>6800) FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:03:01:02" FT /product="MHC class II antigen" FT CDS join(428..536,1968..2237,4788..5069,5579..5689,6787..6800) FT /codon_start=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:03:01:02" FT /product="MHC class II antigen" FT /protein_id="QHR76953.1" FT /translation="MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVYQFKG FT MCYFTNGTERVRLVTRHIYNREEYARFGSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTR FT AELDTVCRHNYEVAFRGILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRW FT FRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRA FT QSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSQKGLLH" XX SQ Sequence 7005 BP; 1775 A; 1616 C; 1691 G; 1923 T; 0 other; gaaatatgat ccccacctaa tttgctttat taaaaatccc aagtataata acaactggtt 60 tttaacaata ttacagagat gtttactgtt gaatcgcatt tttttctttt gcctctcaaa 120 atccccgagg cattcgttct tcagctcttc tataatcgag aggaaatttt cacctcagat 180 gttcatccag tacaatttga agacgtcaca gtgccaggca ctggattgag aaccttcaca 240 aaaaaaatgt ctgcccagag acagatgagg tccttcagct ccagtgctga ttggttcttt 300 tccgagggac catccaatcc tgccactcac ggaaacatcc acaggttttt attctttctg 360 ccaggtacat cagatccatc aggtccgagc tgtgttgact accactgctt ttcccttcgt 420 ctcagttatg tcttggaaga aggctttgcg gatccccgga gaccttcggg tagcaactgt 480 caccttgatg ctggcgatgc tgagctccct actggctgag ggcagagact ctcccggtaa 540 gtgcagggca gctgctctcc agagccgcca ctctgggaac aggctctcct tgggctgggg 600 tatgggggat ggtgatctct atgatcttgg acacaatctt tcatcaacat ttcctctctc 660 ttgggaaaga aagctatgtt gcattcccat ttatctttta gtgatgagat gaggacaatc 720 caatccccat cctacaggct taagcctgga agaggaggag agaggagaga aagaggagat 780 aaagtgtaca tttactacca gcgataggac aaagtgagca tggggttatt tttgaagata 840 tgaatttctc caaagacaca gcaggatttg tcatttaggc gtgccccaag actgcctgga 900 cttaggatta tgagatcctg cattggaaaa tgtgaggcag caatggtgtc tgtagtctct 960 gtatttgagg aaaatttgtc tctattcctg accgagtgga gcatttgtgg aggcaaaatc 1020 ttggtgctga gggaagctga ctggctgacc acagagaggg agtcttcggg tttcactgat 1080 ttatgggcaa atggtgactt gagtgggatt cagagacccg agttaatggt ggactgaatt 1140 tagtaggaag gaggatgtaa agaagggaaa taacacatat tgtgaaacca ctcacttcag 1200 acagaacaat actttatata acttctctct cactccttct aacatcctgt gtgtagatat 1260 catgattttc ttttacacaa ttatacttgt gatatggata ttctgttaca taacctgccc 1320 aaactggtga ctgccacagt ttaactggaa tctagtttat caaattcaaa agcttgtgct 1380 ctttccatga ataaatgtct ctatctagga ctcagaggtg taggtccttt ccaacataga 1440 agggagtgaa cctcaacggg acttgggagg gtaaatctag gcatgggaag gaaggtattt 1500 tacccaggga ccaagagaat acgcgtgtca gaacgaggcc aggcttaatt cctggaccta 1560 tctcgtcatt ccgttgaact ctcagattta tgtggataac tttatctctg aggtatccag 1620 gagcttcatg aaaaatggga tttcatgcga gaacgccctg atccctctaa gtgcagaggt 1680 gcatgtaaaa tcagcccgac tgcctcttcg ctgggttcac aggctcaggc agggacaggg 1740 ctttcctccc tttcctggat gtaggaaggc agattccaga agcccgcaaa gaaggcgggc 1800 agagctgggc agagccgccg ggaggatccc aggtctggag cgccaggcac gggcgggcgg 1860 gaactggagg tcgcgcgggc ggttccacag ctccaggccg ggtcagggcg gcggctgcgg 1920 gggcggccgg gctggggcct gactgaccgg ccggtgattc cccgcagagg atttcgtgta 1980 ccagtttaag ggcatgtgct acttcaccaa cgggacggag cgcgtgcgtc ttgtaaccag 2040 acacatctat aaccgagagg agtacgcgcg cttcggcagc gacgtggggg tgtaccgcgc 2100 ggtgacgccg caggggcggc ctgatgccga gtactggaac agccagaagg aagtcctgga 2160 ggggacccgg gcggagttgg acacggtgtg cagacacaac tacgaggtgg cgttccgcgg 2220 gatcttgcag aggagaggtg agcgtcgtcg cccctccgtg aggcccaccc ttggccgaga 2280 ccccgagttt ctgtgccggg aggggcgatg ggggcgaggt ctctgaaatc tgagcccagt 2340 tcattccacc ccaggggaaa ggaggcggcg gcggggtggt gggggcaggt gcatcggagg 2400 ggcggggacc tagggcagag cagggggaca agcagagttg gccaggctgc ctagtgtccc 2460 ccccagcctc cccgtccgtc ggcctcgtcc tccgctctgc acgtttctcg cctcgtgcct 2520 tatgtgtttg cctcctcgta ccttaccttc gctaagcagt tctctctgcc cccagtgccc 2580 accctcttcc cctgcccgcc ggcctcgcta gcactgcccc acccagcaag gcccacgtgc 2640 gcagcttgcg ccgcaggaag cttcaggctt ggcctggtgg agttagggct gccccacagc 2700 tgcgcgcagg gcatccagca attacagttg cgaaataaga tattttgact ttttggcttc 2760 aaatcattat tcatcgtaat tctgttttct taaatggcta ccactaatgg cggagatctt 2820 tgaggcgaga gactgtttaa ttattgcatg cctggtacct gacacattga ctggtatgtg 2880 gtgtgagctc aatgatcttc tgttaaattc atgaataaat gtactcagct gccaatccag 2940 ttaggttcaa gaaaaaaaca gaggcttaca aatgaacttt atcaattatt ttctaacatt 3000 ttgcttaatg ctttcaagta aactcttact gacttggatc ttaatagaat ttgtgaatac 3060 aaagtctgag gaaaatgtgt ttgctaaaaa taaaaacaat gcttgaatga tgttgtaagg 3120 cagagtttta atttcttaga aaagctgaac aaatagcact atgcaaagat cagaagtttg 3180 ggaataaata ggttgaagct attaaattat tggataaaaa tagtttcagg ttgcttttgg 3240 cctaggttat cccctccccc ccatcactat ccacttcagg aataaacatt ctgaaagtca 3300 attttaccca ttcaggaagc acttatttct agacagttgc cttatcaaat accatctatg 3360 ttatgtcatt taatctcaca gctacctgtg cattagagat tagcatcacc actttatata 3420 tcctaatatt ggtacatgat aaacacttta agtaatcagc ccacaattac tcaccaagat 3480 cttaagcctc ccaaagtaca caacattctt atgttcctca ctacacatat gtagagtcta 3540 agggatgtaa ggccttgtta aagccagttt tgaccagaag cagcaatgag tctattcctg 3600 tttgttctgt gtgttaatgc ggcattgaaa attcatgatt aatcaatccc tagtctgacc 3660 ccggtgttat ctatgcaggt tcacaaaact tttagtttgc tttacactcc cttgccttct 3720 tttgactcac atcctaatgc cagcaagtac ttatattttt gctatttcag ttttatttcc 3780 ataaaattta ttttatcatc ttttctcata aatttgtgcc ctctattttt actcccagtc 3840 tgttgaagat gaacaaatct tataaggcca catagctgac tctgatttca gttggcctcc 3900 aggaaggaga acctaaagaa aagttcaagt ccaagcagaa accatgattc cttccggatg 3960 atggctcaag agtgccattt aattggggtg ccacctgctg acctcagcaa atcccagtta 4020 tatgtatatg ttcacattac aggctcatta gcccaggccg acctctgcac ggatctcaga 4080 atattttctg tggagaacat acacgataat gtctgatttc agaacaagaa agtaattgtc 4140 aatagcaagg aaatggagta gggtagacag ctagtaatta aactcacttg tgcgttaaaa 4200 agaaattaag gaaaaaaaga aaatgagaga acatattact aaataaagaa agcacacatt 4260 aaatatttgc tatagtttca cactaagaga ataaaggaaa tgtgataaag tggcctaaaa 4320 ggaaaggatg agatgtgtaa aagaggcggg gaaagatgtg tcattttttt ttactatgag 4380 cagcaatctg agaagataaa ggaattgagt tgtggacaaa catgatgttt gatcaagggt 4440 tatttgtttt gaaggcctgc ctactttttt ttcaaatatt acaaactttt gaaataacat 4500 tctacttttt tttcaaatat tacaaacttt tgaaataaca ttctttttgt tttttgctgt 4560 ctgttactag attgcacatt ctataaatgc agggaccata gtatgttatt tatctttgaa 4620 ttctcagtga ttgtcaaatt tatatttgtt gaatgaacct taatccaaga cttcgactcc 4680 aggtatcttt ccactctggt ccaaggaggg atccttcctc atggtagacg tggtgtgtgt 4740 tctcacatct cactcctatg tcttttcctg tctgttactg ccctcagtgg agcccacagt 4800 gaccatctcc ccatccagga cagaggccct caaccaccac aacctgctgg tctgctcggt 4860 gacagatttc tatccaggcc agatcaaagt ccggtggttt cggaatgatc aggaggagac 4920 agccggcgtt gtgtccaccc cccttattag gaatggtgac tggactttcc agatcctggt 4980 gatgctggaa atgactcccc agcgtggaga tgtctacacc tgccacgtgg agcaccccag 5040 cctccagagc cccatcaccg tggagtggcg taaggggata ttgagtttct gttactatgg 5100 gcccacaaga caaagagctc cttctgaccc attccttccc atctcttatc cctgatgtca 5160 ctactgagct gggaatcaca ggagactaga gcacctcttg ctccatggca agtgcatcag 5220 aagaatcctg gtctcatcac ctttccagat gctagggaaa ttactctaca tactgttgct 5280 ctgaatccca gtcctgatag ctctgaggga ctgattctta gggctggtga ctgggatctt 5340 agggtctaag gttatggatg agttcttgaa gagcagagat ttgcttcccc actctctcac 5400 ctattcactg tatccaagga cctattggct ggtctttccc ctccttaggg gtggtctgaa 5460 tggagaacta ggttcctttg atgccttcac cttctgcacc tcagactgga cttcaactcc 5520 tcagcaggga tgctatgggg tgtggggaca aacacagaca ctcagttctg ctctttaggg 5580 gctcagtctg aatctgccca gagcaagatg ctgagtggcg ttggaggctt cgtgctgggg 5640 ctgatcttcc ttgggctggg ccttatcatc cgtcaaagga gtcagaaagg tgaggaaccc 5700 caggggaaaa ggggaagatg ggctgtgacc cagaccctct gttcagagtg gtcctgtctg 5760 tagattagct ctttcctcct gaccctgaga agaagtgcga ggagacagga caagatggga 5820 ggaggcattg gaatctgatt ttactggttg aaaggtagcg ctgtcacaga gctgactgat 5880 agagcttatt ccagggcatc cttaccattc atcattgtct cactggctcc tttccaaaag 5940 cttcctccat taagagggtc agagcctcag cttcctttct ttctagtgac aatttccttt 6000 gttttagggg attttaaatt agggtgctga aggcctggaa gaacatgggt gggaagagaa 6060 tgtaactcta agtcatgtgt gtcattttcc tttggggtga gagggtggct gtttgtgtaa 6120 tgagaccttt ctctgcataa cttccttttg taagacctca agggcctcca ccagcaggta 6180 atatttcagc catgatccag tgtggggagg cacaggtata agagggaaga gcatgagctg 6240 agtgtacctg accacagtgg tccatgttca tggcctattt gctgctatga ggatcaagac 6300 ttaggggaga agtttgccag tttctaggaa tctccagaca ttgttcccca gaaccaagcc 6360 ttaactttgg tggcatcttc ttgtgaaatg tggagccaga accacagctt aaatgttaga 6420 cactaggatg atgcccactt tgtgccacat gatggtggct actgcctgta agcattttcc 6480 agtgactgaa agaggctgct agtggtcggg aagagatatc atccaatttc ctaaaaagac 6540 tgaacccttc atattcccca gaagaataac agctgttccc cacctcccac acatctgcat 6600 caagctgaag ttctgtgtcc tcatgagctg atttcacctt tgcacagatc ttgggggagg 6660 tgatgacaat acaccctgga cctcaacttt ctctgtctga agctgcaggg ggcccctgaa 6720 gggtggggga gatggcaggc ccaccaggat accctgtgct gatcaatgct cttctctctt 6780 ctccagggct tctgcactga ctcctgagac tattttaact aggattggtt atcactcttc 6840 tgtgatgcct gcttgtgcct gcccagaatt cccagctgcc tgtgtcagct tgtccccctg 6900 agatcaaagt cctacagtgg ctgtcacgca gccaccaggt catctccttt catccccacc 6960 ccaaggcgct ggctgtgact ctgcttcctg cactgaccca gagcc 7005 //