Dbfetch
ID MN823642; SV 1; linear; genomic DNA; STD; HUM; 6415 BP. XX AC MN823642; XX DT 03-JUN-2020 (Rel. 144, Created) DT 03-JUN-2020 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens MHC class II antigen (HLA-DQB1) gene, HLA-DQB1*05var allele, DE partial cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-6415 RA Gomez-Massa E.; RT ; RL Submitted (12-DEC-2019) to the INSDC. RL Histocompatibility and Immunogenetics Laboratory, Blood and Tissue Bank, RL Edifici Frederic Duran i Jorda, Passeig del Taulat 106-116, Barcelona RL 08005, Spain XX DR MD5; 443169710fb4a786dd4720863b981dc1. XX CC ##Assembly-Data-START## CC Assembly Method :: GenDx (NGS engine) v. IMGT 3.37.0. CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6415 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <1..>6415 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05var" FT mRNA join(<1..177,1636..1905,4415..4696,5208..>5318) FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05var" FT /product="MHC class II antigen" FT 5'UTR <1..68 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05var" FT CDS join(69..177,1636..1905,4415..4696,5208..>5318) FT /codon_start=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05var" FT /product="MHC class II antigen" FT /protein_id="QKE11439.1" FT /translation="MSWKKSLRIPGDLRVATVTLMLAILSSSLAEGRDSPEDFVYQFKG FT LCYFTNGTERVRGVTRHIYNREEYVRFDSDVGVYRAVTPQGRPVAEYWNSQKEVLEGAR FT ASVDRVCRHNYEVAYRGILQRRVEPTVTISPSRTEALNHHNLLICSVTDFYPSQIKVRW FT FRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHMEHPSLQSPITVEWRA FT QSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSRK" XX SQ Sequence 6415 BP; 1629 A; 1459 C; 1586 G; 1741 T; 0 other; gccaggtaca tcagatccat caggtctgag ctgtgttgac taccactact tttcccttcg 60 tctcaattat gtcttggaag aagtctttgc ggatccccgg agaccttcgg gtagcaactg 120 tcaccttgat gctggcgatc ctgagctcct cactggctga gggcagagac tctcccggta 180 agtgcaggaa agctgctctc cagagccgcc actctgggaa caggctttcc ttgggctggg 240 gtatggggga tggtgatctc catggtcttg gacacaatct ttcatcaaca tttcctcttt 300 tttgggaaag aaagctatgt tgcattccca tttacctttt agtgatgaaa tgaggacaat 360 ccaatcccca tcctacaggt ttaagcctgg aagaggagga gagaggagag gaaagaggag 420 ataaagtgta catttactac cagtgatagg acaaagtgag catggggtta tttttgaaga 480 tattaatttc tccaaagaca cagcaggatt tgtcatttca gcgtgcccca agactttgcc 540 tggactaaat attatgagat tctgcagtgg gaaatgtaag gcagcgatgg tgtctgtagt 600 ctccgtattt gaggaaaagt agtctgtatt cctgactgac tggagcgttt gtggaggcaa 660 aatcttggta ctgagggaag ctgactggct gaccacagac agggagtctt caggtttcac 720 tgatttatgg gcaaatggtg acttgagtgg gattcagaga cccgagttgt tggtggacta 780 aatttagtag aaaggaggat gtaaagaagg gaaataacac atattatgaa accactcact 840 cagacacaga acaatacttt acataaattc tctctcactc cttctaacat cctgtgtgca 900 gatatcatga ttttctttta cacaattata cttgtgatac ggatattctg cccaatatgg 960 atatacacaa cctggccaag ctggtaactg ccacagttta attggaatct agtttatcaa 1020 attcaaaagc ttatgctctt tccatgaata aatatttcta tctaggactc agagttgtag 1080 gtcctttcca acatagaagg gagtgaacct caacgggtct tgggagggta aatccaggca 1140 tgggaaggaa ggtattttac ccagggacca agagaatacg cgtatcagaa cgaggacaag 1200 attaattcct ggacctgtcg catcattccc ttgaactcac aggtttatgt ggataagttt 1260 atctctgagg tttccaggag ctgcatgaaa aatgggattt catgcgagaa cgccccgatc 1320 cctctaagtg cagaggtcca tgtaaaatca gcccgactgc ctcttcgctg ggttcactgg 1380 ctcaggcagg gacagggctt tccgcccttt cctgcctgta ggaaggcgga ttcccgaagc 1440 ccccagagag ggcgggcagg gctgggcaga gccgccggga ggatcccagg tctggggcgc 1500 caggcacggg ctggcgggaa ctggaggtcg cgcgggcggt tccacagctc cggtccgggt 1560 cagggcggcg gctgggggcg cagccgggct agggccaggc tggggcctga ctgactggcc 1620 cgtgattccc cgcagaggat ttcgtgtacc agtttaaggg cctgtgctac ttcaccaacg 1680 ggacggagcg cgtgcggggt gtgaccagac acatctataa ccgagaggag tacgtgcgct 1740 tcgacagcga cgtgggggtg taccgggcag tgacgccgca ggggcggcct gttgccgagt 1800 actggaacag ccagaaggaa gtcctggagg gggcccgggc gtcggtggac agggtgtgca 1860 gacacaacta cgaggtggcg taccgcggga tcctgcagag gagaggtgag cgtcgtcgcc 1920 cctccgtgag gcccaccgtt ggccgggacc tctagtctct gtgctgggag gggcgatggg 1980 gttgcggcct ctgaaacctg agccccgttt attccacccc aggggacagg agttggcggc 2040 gtgagtggtg gggcaggtgc atcagatggg cggggaccta gggcagagca gggagacaag 2100 cagagttggc caggctgcct agtgtccccc cagggtcctc gtctgttggc ctcgtcctcc 2160 gctctgcacg tttctcgcct cgtgccttat gtgtttgcct cctcgtgcct tacctttgct 2220 aagcagttct ctctgccccc aatgcccacc ctcttcccct gcccgtccgc cccactagca 2280 ctgccccatt cagcaaggcc cacgtgcgca gctcgcgccg caggaagctt caggcttggc 2340 ctggtggagt tagggctgcc ccacaactgc gcccagggca tccagcaatt acagttgcaa 2400 aataagatat tttgactttt tggcttcaaa tcattattca tcgtaattct gttttcctaa 2460 atggctatca ctaatggcgg agatttttga ggtgggagac tgtttaaatt attgcatgct 2520 tggtacctga cactttgact ggtatgtggt atgagctcaa tgatcttctg ttaaattcat 2580 gaataaatgt actcagctgc ccatccactt aggctcaaga aaaaaacaga ggcttacaaa 2640 tggactttgt taattatttt ctatcatttt gcctaatgct ttaaagtaaa ctcttattga 2700 ctaggatctt aatagaattt gtgaatacaa agtctgagaa aaaaagtgtt tgctaaaaat 2760 aaaaacaatg cttgaatgac gttgtaaggc agagttttaa tttcttagac aagctgaaca 2820 aatggcacaa tgcaaagggc agaagtttgg gaataaatag gttgaagcca ttaaattatt 2880 agataaaaat agtttcaggt tgcttttggc ctgggttctc ccctccctcc atcactatcc 2940 acttcaggaa taaacattct gaaagtcaat tttacccatt caggtagcac ttatttctag 3000 acagttgcct tatcaaatac catatatgtt gtgccattta atctcacagt tacctgtgca 3060 ttagagatta gcatcaccac ttgatatatc ctaatattgg tacaggataa acactttaag 3120 taatcagccc acaattactc accaagacct taagcctccc aaagtataaa ccattcttat 3180 gttcctcagt gtacatccat agagtctaag ggatgtaagg ccttgttgaa gccagttttg 3240 accagaagca gcaatgagcc tattcctgtt tgttctccat gttaatgggg cattgaaaat 3300 tcactgatta atcaatccct agtctgaccc cagtgttatc tatgcaggtt cacaaaactt 3360 ttagattact ttacaccccc ttgccttctt ttgactcaca ttctaatgcc agcaagtact 3420 tatatttttg ctatttcagt tctatttcca taaaatttat tttatcatct tttctcataa 3480 aattgtgccc tctattttac tcccagtctg tttaagatga acaaatctta caaggtcaca 3540 tagctgactg tgatatcagt tggactccag gaaggagaac ctaaagaaaa gttcaagtcc 3600 aagcagaaac cgtgattcct tccggatgat ggctcaagag tgatgtttaa ctgggatgca 3660 acctgctgac ctcagcaaat cctagttata tgtatgtgtt cacattacag gctcattagc 3720 ccaggccgac ctctgcatgg atctcagaat attttctatg gagaacatac atgataatgt 3780 ctgatttcag aacaagaaag taattctcaa tagcaaggaa atggagtagg gtagacagct 3840 agtaactaaa ctcacttgtg cgttaagaag aaattaagga aaaaagaaaa taagagaaca 3900 tattactaaa taaagaaaca cacattaaat atttgctata gtttcacact aagagaataa 3960 aggaaatgca ataaagtggc ctgaaaggta aaggatgaga tgtgtaaaag aggcagggaa 4020 agatgtataa taatttttta ctatgagcag caatctgaga agataaagga attgagctgt 4080 gggcaaacat gatgtttgat cagtgttatt tgttttcaag gcctgcctac tttttttttc 4140 aaatattaca aacttttgaa ataacattct ttttgttttt tactgtctgt tactagattg 4200 catattctat aaatgaaggg accatggtat gttgtttatc tttggattct cagtgattgt 4260 caaatttata tttgttgaag gaaccttaat ccaagacttg gactccaggt atctttccac 4320 tctggttcca aggagggacc cttcctcatg gtggacgtgc tgtgtggtct cacgtctcac 4380 tcctgtgtct tttcctgtct gttactgccc ttagtggagc ccacagtgac catctcccca 4440 tccaggacag aggccctcaa ccaccacaac ctgctgatct gctcggtgac agatttctat 4500 ccaagccaga tcaaagtccg gtggtttcgg aatgatcagg aggagacagc cggcgttgtg 4560 tccacccccc tcattaggaa cggtgactgg accttccaga tcctggtgat gctggaaatg 4620 actccccagc gtggagatgt ctacacctgc cacatggagc accccagcct ccagagcccc 4680 atcaccgtgg agtggcgtaa ggagatattg agtttctgtt attatgggcc ccacaagaca 4740 aagagctcct tctgacccat tccttcccat ctcttatccc tgatgtcact actgagctgg 4800 gaatcacagg agactagagc acctctagtt ccatggcgag tgcatcagaa gaatcctgat 4860 ctcatcacct ttccagatgc tagggaaatt actctacata ctgttgctct ggatcccagt 4920 cctgatagct ctgacggact gattcttagg gctggtgatt gggatcttag ggtctaaggt 4980 tatggatgag ttcctgagga gcagagattt gcttccccac tctctcacct acccactgta 5040 tccaaggacc tattgtctgg cctttcccct ccttaggggt ggtctgaatg gagagctagg 5100 ttcctttgat gccttcacct cctgcacctc agactggact tcaactcctc agcagggatg 5160 ctatggggtg tggggacaaa cactgacact caggttctgc tttttagggg ctcagtctga 5220 atctgcccag agcaagatgc tgagtggcgt tggaggcttc gtgctggggc tgatcttcct 5280 tgggcttggc cttatcatcc gtcaaaggag tcggaaaggt gaggaacccc aggggaaaag 5340 gggaagatgg gctgtgaccc agaccctctg ttcagagtgg tcctgtctgt agattagctc 5400 tttcctcctg accctgagag gaagtgcgag gagacaggac aagatgggag gaggcattgg 5460 aatctgattt tactggttga aaggtagcgc tgtcacagag ctgactgata gagcttattc 5520 cagggcatcc ttaccattca tcattgtctc actggctcct ttccaaaagc ttcctccatt 5580 aagagggtca gagcctcagc ctcctttctt tctggtgaca atttcctttg ttttagggga 5640 ttttaaatta gggtgctgaa ggcctggaag aacatgggtg ggaagagaat gtaactctaa 5700 gtcatgtgtg tcattttcct ttggggtgag agagtggctg tttgtgtaat gagacctttc 5760 tctgcataac ttccttttgt aagacctcaa gggcctccac cagcaggtaa tatttcagcc 5820 atgatccagt gtggggaggc acaggtataa gagggaagag catgagctga gtgtacctga 5880 ccacagtggt ccatgttcgt ggcctatttg ctgctatgag gatcaagact taggggagaa 5940 gtttgccagt ttctaggaat ctccagacat tgttccccag aaccaagcct taactttggt 6000 ggcatcttct tgtgaaatgt ggagccagaa ccacagctta aatgttagac actaggatga 6060 tgcccacttt gtgccacatg atggtggcta ctgcctgtag gcattttcca gtgactgaaa 6120 gaggctgcta gtggtcggga tgagatatca tccaatttcc taaaaagact gaacccttca 6180 tattccccag aagaataaca gctgttcccc acctcccaca catctgcatc aagctgaagt 6240 tctgtgtcct cgtgagctga tttcaccttt gcacagatct tgggggaggt gatgacaata 6300 caccctggac ctcaactttc tctgtctgaa gctgcagggg gcccctgaag ggtgggggag 6360 atggcaggcc caccaggata ccctgtgctg atcaatcctc ttctctcttc tccag 6415 //