ID MN537813; SV 1; linear; genomic DNA; STD; HUM; 1801 BP.
XX
AC MN537813;
XX
DT 08-APR-2020 (Rel. 144, Created)
DT 08-APR-2020 (Rel. 144, Last updated, Version 1)
XX
DE Homo sapiens MHC class I antigen (HLA-C) gene, HLA-C*04:408 allele,
DE complete cds.
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RC Publication Status: Available-Online prior to print
RP 1-1801
RX PUBMED; 32026622.
RA Cargou M., Elsermans V., Top I., Ralazamahaleo M., Visentin J.;
RT "Characterization of the novel HLA-C*04:408 allele by sequencing-based
RT typing";
RL HLA 0:0(2020).
XX
RN [2]
RP 1-1801
RA Cargou M., Elsermans V., Top I., Ralazamahaleo M., Visentin J.;
RT ;
RL Submitted (03-OCT-2019) to the INSDC.
RL laboratoire d'Immunologie et d'Immunogenetique, CHU Bordeaux, Place Amelie
RL Raba Leon, Bordeaux, Gironde 33076, France
XX
DR MD5; 2073d9ee1e46f0466a2b39caa23bce64.
XX
CC ##Assembly-Data-START##
CC Assembly Method :: TypeStream Visual v. 1.3.0; MIA FORA FLEX
CC v. 4
CC Sequencing Technology :: Illumina; IonTorrent
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1..1801
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT gene <1..>1801
FT /gene="HLA-C"
FT /allele="HLA-C*04:408"
FT mRNA join(<1..73,174..443,544..819,920..1195,1296..1414,
FT 1515..1548,1649..1696,1797..>1801)
FT /gene="HLA-C"
FT /allele="HLA-C*04:408"
FT /product="MHC class I antigen"
FT CDS join(1..73,174..443,544..819,920..1195,1296..1414,
FT 1515..1548,1649..1696,1797..1801)
FT /codon_start=1
FT /gene="HLA-C"
FT /allele="HLA-C*04:408"
FT /product="MHC class I antigen"
FT /protein_id="QIS62436.1"
FT /translation="MRVMAPRTLILLLSGALALTETWAGSHSMRYFSTSVSWPGRGEPR
FT FIAVGYVDDTQFVRFDSDAASPRGEPREPWVEQEGPEYWDRETQKYKRQAQADRVNLRK
FT LRGYYNQSEDGSPTLQRMFGCDLGPDGRLLRGYNQFAYDGKDYIALNEDLRSWTAADTA
FT AQITQRKWEAAREAEQRRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHE
FT ATLRCWALGFYPAEITLTWQWDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY
FT TCHVQHEGLPEPLTLRWKPSSQPTIPIVGIVAGLAVLAVLAVLGAMVAVVMCRRKSSGG
FT KGGSCSQAASSNSAQGSDESLIACKA"
FT exon 1..73
FT /gene="HLA-C"
FT /allele="HLA-C*04:408"
FT /number=1
FT gap 74..173
FT /estimated_length=unknown
FT exon 174..443
FT /gene="HLA-C"
FT /allele="HLA-C*04:408"
FT /number=2
FT gap 444..543
FT /estimated_length=unknown
FT exon 544..819
FT /gene="HLA-C"
FT /allele="HLA-C*04:408"
FT /number=3
FT gap 820..919
FT /estimated_length=unknown
FT exon 920..1195
FT /gene="HLA-C"
FT /allele="HLA-C*04:408"
FT /number=4
FT gap 1196..1295
FT /estimated_length=unknown
FT exon 1296..1414
FT /gene="HLA-C"
FT /allele="HLA-C*04:408"
FT /number=5
FT gap 1415..1514
FT /estimated_length=unknown
FT exon 1515..1548
FT /gene="HLA-C"
FT /allele="HLA-C*04:408"
FT /number=6
FT gap 1549..1648
FT /estimated_length=unknown
FT exon 1649..1696
FT /gene="HLA-C"
FT /allele="HLA-C*04:408"
FT /number=7
FT gap 1697..1796
FT /estimated_length=unknown
FT exon 1797..1801
FT /gene="HLA-C"
FT /allele="HLA-C*04:408"
FT /number=8
XX
SQ Sequence 1801 BP; 217 A; 332 C; 375 G; 177 T; 700 other;
atgcgggtca tggcgccccg aaccctcatc ctgctgctct cgggagccct ggccctgacc 60
gagacctggg ccgnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 120
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnngctccca 180
ctccatgagg tatttctcca catccgtgtc ctggcccggc cgcggggagc cccgcttcat 240
cgcagtgggc tacgtggacg acacgcagtt cgtgcggttc gacagcgacg ccgcgagtcc 300
aagaggggag ccgcgggagc cgtgggtgga gcaggagggg ccggagtatt gggaccggga 360
gacacagaag tacaagcgcc aggcacaggc tgaccgagtg aacctgcgga aactgcgcgg 420
ctactacaac cagagcgagg acgnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 480
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 540
nnnggtctcc caccctccag aggatgtttg gctgcgacct ggggccggac gggcgcctcc 600
tccgcgggta taaccagttc gcctacgacg gcaaggatta catcgccctg aacgaggatc 660
tgcgctcctg gaccgccgcg gacacggcgg ctcagatcac ccagcgcaag tgggaggcgg 720
cccgtgaggc ggagcagcgg agagcctacc tggagggcac gtgcgtggag tggctccgca 780
gatacctgga gaacgggaag gagacgctgc agcgcgcggn nnnnnnnnnn nnnnnnnnnn 840
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 900
nnnnnnnnnn nnnnnnnnna acacccaaag acacacgtga cccaccatcc cgtctctgac 960
catgaggcca ccctgaggtg ctgggccctg ggcttctacc ctgcggagat cacactgacc 1020
tggcagtggg atggggagga ccaaactcag gacaccgagc ttgtggagac caggccagca 1080
ggagatggaa ccttccagaa gtgggcagct gtggtggtgc cttctggaga agagcagaga 1140
tacacgtgcc atgttcagca cgaggggctg ccggagcccc tcaccctgag atggannnnn 1200
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1260
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnagccg tcttcccagc ccaccatccc 1320
catcgtgggc atcgttgctg gcctggctgt cctggctgtc ctagctgtcc taggagctat 1380
ggtggctgtt gtgatgtgta ggaggaagag ctcannnnnn nnnnnnnnnn nnnnnnnnnn 1440
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1500
nnnnnnnnnn nnnnggtgga aaaggaggga gctgctctca ggctgcgtnn nnnnnnnnnn 1560
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1620
nnnnnnnnnn nnnnnnnnnn nnnnnnnncc agcaacagtg cccagggctc tgatgagtct 1680
ctcatcgctt gtaaagnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1740
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnncctg 1800
a 1801
//