Dbfetch

ID   MN537813; SV 1; linear; genomic DNA; STD; HUM; 1801 BP.
XX
AC   MN537813;
XX
DT   08-APR-2020 (Rel. 144, Created)
DT   08-APR-2020 (Rel. 144, Last updated, Version 1)
XX
DE   Homo sapiens MHC class I antigen (HLA-C) gene, HLA-C*04:408 allele,
DE   complete cds.
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KW   .
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-1801
RX   PUBMED; 32026622.
RA   Cargou M., Elsermans V., Top I., Ralazamahaleo M., Visentin J.;
RT   "Characterization of the novel HLA-C*04:408 allele by sequencing-based
RT   typing";
RL   HLA 0:0(2020).
XX
RN   [2]
RP   1-1801
RA   Cargou M., Elsermans V., Top I., Ralazamahaleo M., Visentin J.;
RT   ;
RL   Submitted (03-OCT-2019) to the INSDC.
RL   laboratoire d'Immunologie et d'Immunogenetique, CHU Bordeaux, Place Amelie
RL   Raba Leon, Bordeaux, Gironde 33076, France
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DR   MD5; 2073d9ee1e46f0466a2b39caa23bce64.
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: TypeStream Visual v. 1.3.0; MIA FORA FLEX
CC                            v. 4
CC   Sequencing Technology :: Illumina; IonTorrent
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..1801
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   gene            <1..>1801
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*04:408"
FT   mRNA            join(<1..73,174..443,544..819,920..1195,1296..1414,
FT                   1515..1548,1649..1696,1797..>1801)
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*04:408"
FT                   /product="MHC class I antigen"
FT   CDS             join(1..73,174..443,544..819,920..1195,1296..1414,
FT                   1515..1548,1649..1696,1797..1801)
FT                   /codon_start=1
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*04:408"
FT                   /product="MHC class I antigen"
FT                   /protein_id="QIS62436.1"
FT                   /translation="MRVMAPRTLILLLSGALALTETWAGSHSMRYFSTSVSWPGRGEPR
FT                   FIAVGYVDDTQFVRFDSDAASPRGEPREPWVEQEGPEYWDRETQKYKRQAQADRVNLRK
FT                   LRGYYNQSEDGSPTLQRMFGCDLGPDGRLLRGYNQFAYDGKDYIALNEDLRSWTAADTA
FT                   AQITQRKWEAAREAEQRRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHE
FT                   ATLRCWALGFYPAEITLTWQWDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY
FT                   TCHVQHEGLPEPLTLRWKPSSQPTIPIVGIVAGLAVLAVLAVLGAMVAVVMCRRKSSGG
FT                   KGGSCSQAASSNSAQGSDESLIACKA"
FT   exon            1..73
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*04:408"
FT                   /number=1
FT   gap             74..173
FT                   /estimated_length=unknown
FT   exon            174..443
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*04:408"
FT                   /number=2
FT   gap             444..543
FT                   /estimated_length=unknown
FT   exon            544..819
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*04:408"
FT                   /number=3
FT   gap             820..919
FT                   /estimated_length=unknown
FT   exon            920..1195
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*04:408"
FT                   /number=4
FT   gap             1196..1295
FT                   /estimated_length=unknown
FT   exon            1296..1414
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*04:408"
FT                   /number=5
FT   gap             1415..1514
FT                   /estimated_length=unknown
FT   exon            1515..1548
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*04:408"
FT                   /number=6
FT   gap             1549..1648
FT                   /estimated_length=unknown
FT   exon            1649..1696
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*04:408"
FT                   /number=7
FT   gap             1697..1796
FT                   /estimated_length=unknown
FT   exon            1797..1801
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*04:408"
FT                   /number=8
XX
SQ   Sequence 1801 BP; 217 A; 332 C; 375 G; 177 T; 700 other;
     atgcgggtca tggcgccccg aaccctcatc ctgctgctct cgggagccct ggccctgacc        60
     gagacctggg ccgnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       120
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnngctccca       180
     ctccatgagg tatttctcca catccgtgtc ctggcccggc cgcggggagc cccgcttcat       240
     cgcagtgggc tacgtggacg acacgcagtt cgtgcggttc gacagcgacg ccgcgagtcc       300
     aagaggggag ccgcgggagc cgtgggtgga gcaggagggg ccggagtatt gggaccggga       360
     gacacagaag tacaagcgcc aggcacaggc tgaccgagtg aacctgcgga aactgcgcgg       420
     ctactacaac cagagcgagg acgnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       480
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       540
     nnnggtctcc caccctccag aggatgtttg gctgcgacct ggggccggac gggcgcctcc       600
     tccgcgggta taaccagttc gcctacgacg gcaaggatta catcgccctg aacgaggatc       660
     tgcgctcctg gaccgccgcg gacacggcgg ctcagatcac ccagcgcaag tgggaggcgg       720
     cccgtgaggc ggagcagcgg agagcctacc tggagggcac gtgcgtggag tggctccgca       780
     gatacctgga gaacgggaag gagacgctgc agcgcgcggn nnnnnnnnnn nnnnnnnnnn       840
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       900
     nnnnnnnnnn nnnnnnnnna acacccaaag acacacgtga cccaccatcc cgtctctgac       960
     catgaggcca ccctgaggtg ctgggccctg ggcttctacc ctgcggagat cacactgacc      1020
     tggcagtggg atggggagga ccaaactcag gacaccgagc ttgtggagac caggccagca      1080
     ggagatggaa ccttccagaa gtgggcagct gtggtggtgc cttctggaga agagcagaga      1140
     tacacgtgcc atgttcagca cgaggggctg ccggagcccc tcaccctgag atggannnnn      1200
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1260
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnagccg tcttcccagc ccaccatccc      1320
     catcgtgggc atcgttgctg gcctggctgt cctggctgtc ctagctgtcc taggagctat      1380
     ggtggctgtt gtgatgtgta ggaggaagag ctcannnnnn nnnnnnnnnn nnnnnnnnnn      1440
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1500
     nnnnnnnnnn nnnnggtgga aaaggaggga gctgctctca ggctgcgtnn nnnnnnnnnn      1560
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1620
     nnnnnnnnnn nnnnnnnnnn nnnnnnnncc agcaacagtg cccagggctc tgatgagtct      1680
     ctcatcgctt gtaaagnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1740
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnncctg      1800
     a                                                                      1801
//