Dbfetch
ID MN461231; SV 1; linear; genomic DNA; STD; HUM; 6452 BP. XX AC MN461231; XX DT 15-MAY-2020 (Rel. 144, Created) DT 15-MAY-2020 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens MHC class II antigen (HLA-DQB1) gene, HLA-DQB1*06:02:01:05 DE allele, exons 1 through 5 and complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-6452 RX PUBMED; 31981322. RA Vianna R., Turner T., Georgiou X., Porto L.C.; RT "Characterization of two novel HLA-DQB1*06:02:01 variants, identified in RT Brazilian individuals"; RL HLA 0:0(2020). XX RN [2] RP 1-6452 RA Vianna R., Porto L.C.; RT ; RL Submitted (13-SEP-2019) to the INSDC. RL Laboratorio de Histocompatibilidade e Criopreservacao - HLA/UERJ, Rio de RL Janeiro State University, Av Marechal Rondon 381, Rio de Janeiro, RJ RL 20950-003, Brazil XX DR MD5; adacbd85cd9783c5a047755a453e57e2. XX CC ##Assembly-Data-START## CC Assembly Method :: Omixon HLA Twin v. 3.1.3; TypeStream CC Visual v. 1.3.0 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6452 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="HLA-UERJ-103162" FT /db_xref="taxon:9606" FT gene <1..>6452 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:05" FT mRNA join(<1..154,1586..1855,4405..4686,5196..5306,6404..>6452) FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:05" FT /product="MHC class II antigen" FT exon <1..154 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:05" FT /number=1 FT 5'UTR <1..45 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:05" FT CDS join(46..154,1586..1855,4405..4686,5196..5306,6404..6417) FT /codon_start=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:05" FT /product="MHC class II antigen" FT /protein_id="QJQ23414.1" FT /translation="MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKG FT MCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTR FT AELDTVCRHNYEVAFRGILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRW FT FRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRA FT QSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSQKGLLH" FT exon 1586..1855 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:05" FT /number=2 FT exon 4405..4686 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:05" FT /number=3 FT exon 5196..5306 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:05" FT /number=4 FT exon 6404..>6452 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:05" FT /number=5 FT 3'UTR 6418..>6452 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:05" XX SQ Sequence 6452 BP; 1640 A; 1459 C; 1588 G; 1765 T; 0 other; gtccgagctg tgttgactac cactgctttt cccttcgtct cagttatgtc ttggaagaag 60 gctttgcgga tccccggaga ccttcgggta gcaactgtca ccttgatgct ggcgatgctg 120 agctccctac tggctgaggg cagagactct cccggtaagt gcagggcagc tgctctccag 180 agccgccact ctgggaacag gctctccttg ggctggggta tgggggatgg tgatctctat 240 gatcttggac acaatctttc atcaacattt cctctctctt gggaaagaaa gctatgttgc 300 attcccattt atcttttagt gatgagatga ggacaatcca atccccatcc tacaggctta 360 agcctggaag aggaggagag aggagagaaa gaggagataa agtgtacatt tactaccagc 420 gataggacaa agtgagcatg gggttatttt tgaagatatg aatttctcca aagacacagc 480 aggatttgtc atttaggcgt gccccaagac tgcctggact taggattatg agatcctgca 540 ttggaaaatg tgaggcagca atggtgtctg tagtctctgt atttgaggaa aatttgtctc 600 tattcctgac cgagtggagc atttgtggag gcaaaatctt ggtgctgagg gaagctgact 660 ggctgaccac agagagggag tcttcgggtt tcactgattt atgggcaaat ggtgacttga 720 gtgggattca gagacccgag ttaatggtgg actgaattta gtaggaagga ggatgtaaag 780 aagggaaata acacatattg tgaaaccact cacttcagac agaacaatac tttatataac 840 ttctctctca ctccttctaa catcctgtgt gtagatatca tgattttctt ttacacaatt 900 atacttgtga tatggatatt ctgttacata acctgcccaa actggtgact gccacagttt 960 aattggaatc tagtttatca aattcaaaag cttgtgctct ttccatgaat aaatgtctct 1020 atctaggact cagagatgta ggtcctttcc aacatagaag ggagtgaacc tcaacgggac 1080 ttgggagggt aaatctaggc atgggaagga aggtatttta cccagggacc aagagaatac 1140 gcgtgtcaga acgaggccag gcttaattcc tggacctatc tcgtcattcc gttgaactct 1200 cagatttatg tggataactt tatctctgag gtatccagga gcttcatgaa aaatgggatt 1260 tcatgcgaga acgccctgat ccctctaagt gcagaggtgc atgtaaaatc agcccgactg 1320 cctcttcgct gggttcacag gctcaggcag ggacagggct ttcctccctt tcctggatgt 1380 aggaaggcag attccagaag cccgcaaaga aggcgggcag agctgggcag agccgccggg 1440 aggatcccag gtctggagcg ccaggcacgg gcgggcggga actggaggtc gcgcgggcgg 1500 ttccacagct ccaggccggg tcagggcggc ggctgcgggg gcggccgggc tggggcctga 1560 ctgaccggcc ggtgattccc cgcagaggat ttcgtgttcc agtttaaggg catgtgctac 1620 ttcaccaacg ggacggagcg cgtgcgtctt gtgaccagat acatctataa ccgagaggag 1680 tacgcgcgct tcgacagcga cgtgggggtg taccgcgcgg tgacgccgca ggggcggcct 1740 gatgccgagt actggaacag ccagaaggaa gtcctggagg ggacccgggc ggagttggac 1800 acggtgtgca gacacaacta cgaggtggcg ttccgcggga tcttgcagag gagaggtgag 1860 cgtcgtcgcc cctccgtgag gcccaccctt ggccgagacc ccgagtttct gtgccgggag 1920 gggcgatggg ggcgaggtct ctgaaatctg agcccagttc attccacccc aggggaaagg 1980 aggcggcggc ggggtggtgg gggcaggtgc atcggagggg cggggaccta gggcagagca 2040 gggggacaag cagagttggc caggctgcct agtgtccccc ccagcctccc cgtccgtcgg 2100 cctcgtcctc cgctctgcac gtttctcgcc tcgtgcctta tgtgtttgcc tcctcgtacc 2160 ttaccttcgc taagcagttc tctctgcccc cagtgcccac cctcttcccc tgcccgccgg 2220 cctcgctagc actgccccac ccagcaaggc ccacgtgcgc agcttgcgcc gcaggaagct 2280 tcaggcttgg cctggtggag ttagggctgc cccacagctg cgcgcagggc atccagcaat 2340 tacagttgcg aaataagata ttttgacttt ttggcttcaa atcattattc atcgtaattc 2400 tgttttctta aatggctacc actaatggcg gagatctttg aggcgagaga ctgtttaatt 2460 attgcatgcc tggtacctga cacattgact ggtatgtggt gtgagctcaa tgatcttctg 2520 ttaaattcat gaataaatgt actcagctgc caatccagtt aggttcaaga aaaaaacaga 2580 ggcttacaaa tgaactttat caattatttt ctaacatttt gcttaatgct ttcaagtaaa 2640 ctcttactga cttggatctt aatagaattt gtgaatacaa agtctgagga aaatgtgttt 2700 gctaaaaata aaaacaatgc ttgaatgatg ttgtaaggca gagttttaat ttcttagaaa 2760 agctgaacaa atagcactat gcaaagatca gaagtttggg aataaatagg ttgaagctat 2820 taaattattg gataaaaata gtttcaggtt gcttttggcc taggttatcc cctccccccc 2880 atcactatcc acttcaggaa taaacattct gaaagtcaat tttacccatt caggaagcac 2940 ttatttctag acagttgcct tatcaaatac catctatgtt atgtcattta atctcacagc 3000 tacctgtgca ttagagatta gcatcaccac tttatatatc ctaatattgg tacatgataa 3060 acactttaag taatcagccc acaattactc accaagatct taagcctccc aaagtacaca 3120 acattcttat gttcctcact acacatatgt agagtctaag ggatgtaagg ccttgttaaa 3180 gccagttttg accagaagca gcaatgagtc tattcctgtt tgttctgtgt gttaatgcgg 3240 cattgaaaat tcatgattaa tcaatcccta gtctgacccc ggtgttatct atgcaggttc 3300 acaaaacttt tagtttgctt tacactccct tgccttcttt tgactcacat cctaatgcca 3360 gcaagtactt atatttttgc tatttcagtt ttatttccat aaaatttatt ttatcatctt 3420 ttctcataaa tttgtgccct ctatttttac tcccagtctg ttgaagatga acaaatctta 3480 taaggccaca tagctgactc tgatttcagt tggcctccag gaaggagaac ctaaagaaaa 3540 gttcaagtcc aagcagaaac catgattcct tccggatgat ggctcaagag tgccatttaa 3600 ttggggtgcc acctgctgac ctcagcaaat cccagttata tgtatatgtt cacattacag 3660 gctcattagc ccaggccgac ctctgcacgg atctcagaat attttctgtg gagaacatac 3720 acgataatgt ctgatttcag aacaagaaag taattgtcaa tagcaaggaa atggagtagg 3780 gtagacagct agtaattaaa ctcacttgtg cgttaaaaag aaattaagga aaaaaagaaa 3840 atgagagaac atattactaa ataaagaaag cacacattaa atatttgcta tagtttcaca 3900 ctaagagaat aaaggaaatg tgataaagtg gcctaaaagg aaaggatgag atgtgtaaaa 3960 gaggcgggga aagatgtgtc atttttttta ctatgagcag caatctgaga agataaagga 4020 attgagttgt ggacaaacat gatgtttgat caagggttat ttgttttgaa ggcctgccta 4080 cttttttttc aaatattaca aacttttgaa ataacattct actttttttt caaatattac 4140 aaacttttga aataacattc tttttgtttt ttgctgtctg ttactagatt gcacattcta 4200 taaatgcagg gaccatagta tgttatttat ctttgaattc tcagtgattg tcaaatttat 4260 atttgttgaa tgaaccttaa tccaagactt cgactccagg tatctttcca ctctggtcca 4320 aggagggatc cttcctcatg gtagacgtgg tgtgtgttct cacatctcac tcctatgtct 4380 tttcctgtct gttactgccc tcagtggagc ccacagtgac catctcccca tccaggacag 4440 aggccctcaa ccaccacaac ctgctggtct gctcggtgac agatttctat ccaggccaga 4500 tcaaagtccg gtggtttcgg aatgatcagg aggagacagc cggcgttgtg tccacccccc 4560 ttattaggaa tggtgactgg actttccaga tcctggtgat gctggaaatg actccccagc 4620 gtggagatgt ctacacctgc cacgtggagc accccagcct ccagagcccc atcaccgtgg 4680 agtggcgtaa ggggatattg agtttctgtt actatgggcc cacaagacaa agagctcctt 4740 ctgacccatt ccttcccatc tcttatccct gatgtcacta ctgagctggg aatcacagga 4800 gactagagca cctcttgctc catggcaagt gcatcagaag aatcctggtc tcatcacctt 4860 tccagatgct agggaaatta ctctacatac tgttgctctg aatcccagtc ctgatagctc 4920 tgagggactg attcttaggg ctggtgactg ggatcttagg gtctaaggtt atggatgagt 4980 tcttgaagag cagagatttg cttccccact ctctcaccta ttcactgtat ccaaggacct 5040 attggctggt ctttcccctc cttaggggtg gtctgaatgg agaactaggt tcctttgatg 5100 ccttcacctt ctgcacctca gactggactt caactcctca gcagggatgc tatggggtgt 5160 ggggacaaac acagacactc agttctgctc tttaggggct cagtctgaat ctgcccagag 5220 caagatgctg agtggcgttg gaggcttcgt gctggggctg atcttccttg ggctgggcct 5280 tatcatccgt caaaggagtc agaaaggtga ggaaccccag gggaaaaggg gaagatgggc 5340 tgtgacccag accctctgtt cagagtggtc ctgtctgtag attagctctt tcctcctgac 5400 cctgagaaga agtgcgagga gacaggacaa gatgggagga ggcattggaa tctgatttta 5460 ctggttgaaa ggtagcgctg tcacagagct gactgataga gcttattcca gggcatcctt 5520 accattcatc attgtctcac tggctccttt ccaaaagctt cctccattaa gagggtcaga 5580 gcctcagctt cctttctttc tagtgacaat ttcctttgtt ttaggggatt ttaaattagg 5640 gtgctgaagg cctggaagaa catgggtggg aagagaatgt aactctaagt catgtgtgtc 5700 attttccttt ggggtgagag agtggctgtt tgtgtaatga gacctttctc tgcataactt 5760 ccttttgtaa gacctcaagg gcctccacca gcaggtaata tttcagccat gatccagtgt 5820 ggggaggcac aggtataaga gggaagagca tgagctgagt gtacctgacc acagtggtcc 5880 atgttcatgg cctatttgct gctatgagga tcaagactta ggggagaagt ttgccagttt 5940 ctaggaatct ccagacattg ttccccagaa ccaagcctta actttggtgg catcttcttg 6000 tgaaatgtgg agccagaacc acagcttaaa tgttagacac taggatgatg cccactttgt 6060 gccacatgat ggtggctact gcctgtaagc attttccagt gactgaaaga ggctgctagt 6120 ggtcgggaag agatatcatc caatttccta aaaagactga acccttcata ttccccagaa 6180 gaataacagc tgttccccac ctcccacaca tctgcatcaa gctgaagttc tgtgtcctca 6240 tgagctgatt tcacctttgc acagatcttg ggggaggtga tgacaataca ccctggacct 6300 caactttctc tgtctgaagc tgcagggggc ccctgaaggg tgggggagat ggcaggccca 6360 ccaggatacc ctgtgctgat caatgctctt ctctcttctc cagggcttct gcactgactc 6420 ctgagactat tttaactagg attggttatc ac 6452 //