Dbfetch

Dbfetch

ID   MN310558; SV 1; linear; mRNA; STD; HUM; 810 BP.
XX
AC   MN310558;
XX
DT   20-FEB-2020 (Rel. 143, Created)
DT   20-FEB-2020 (Rel. 143, Last updated, Version 1)
XX
DE   Homo sapiens isolate 13977_IMGT MHC class II antigen (HLA-DQB1) mRNA,
DE   HLA-DQB1*06:09:new allele, complete cds.
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-810
RA   Arnold P.Y.;
RT   ;
RL   Submitted (13-AUG-2019) to the INSDC.
RL   Pathology, St. Jude Children's Research Hospital, 262 Danny Thomas Place,
RL   Memphis, TN 38105, USA
XX
DR   MD5; 1a70ea8623e014f55b23323ef008424d.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: Assign TruSight HLA software v. 2.1.0943
CC   Assembly Name         :: HL-13-977
CC   Coverage              :: 230
CC   Sequencing Technology :: Illumina
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..810
FT                   /organism="Homo sapiens"
FT                   /isolate="13977_IMGT"
FT                   /mol_type="mRNA"
FT                   /db_xref="taxon:9606"
FT   gene            1..810
FT                   /gene="HLA-DQB1"
FT                   /allele="HLA-DQB1*06:09:new"
FT   CDS             1..810
FT                   /codon_start=1
FT                   /gene="HLA-DQB1"
FT                   /allele="HLA-DQB1*06:09:new"
FT                   /product="MHC class II antigen"
FT                   /protein_id="QIA59056.1"
FT                   /translation="MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVYQFKG
FT                   MCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVTPQGRPVAEYWNSQKEVLERTR
FT                   AELDTVCRHNYEVGYRGILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVQW
FT                   FRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRA
FT                   QSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSQKGPQGPPPAGLLH"
FT   variation       645
FT                   /gene="HLA-DQB1"
FT                   /replace="c"
FT                   /note="synonymous"
XX
SQ   Sequence 810 BP; 173 A; 221 C; 256 G; 160 T; 0 other;
     atgtcttgga agaaggcttt gcggatcccc ggagaccttc gggtagcaac tgtcaccttg        60
     atgctggcga tgctgagctc cctactggct gagggcagag actctcccga ggatttcgtg       120
     taccagttta agggcatgtg ctacttcacc aacgggacgg agcgcgtgcg tcttgtaacc       180
     agatacatct ataaccgaga ggagtacgcg cgcttcgaca gcgacgtggg ggtgtaccgg       240
     gcggtgacgc cgcaggggcg gcctgttgcc gagtactgga acagccagaa ggaagtcctg       300
     gagaggaccc gggcggagtt ggacacggtg tgcagacaca actacgaggt ggggtaccgc       360
     gggatcctgc agaggagagt ggagcccaca gtgaccatct ccccatccag gacagaggcc       420
     ctcaaccacc acaacctgct ggtctgctcg gtgacagatt tctatccagg ccagatcaaa       480
     gtccagtggt ttcggaatga tcaggaggag acagccggcg ttgtgtccac cccccttatt       540
     aggaatggtg actggacttt ccagatcctg gtgatgctgg aaatgactcc ccagcgtgga       600
     gatgtctaca cctgccacgt ggagcacccc agcctccaga gccctatcac cgtggagtgg       660
     cgggctcagt ctgaatctgc ccagagcaag atgctgagtg gcgttggagg cttcgtgctg       720
     gggctgatct tccttgggct gggccttatc atccgtcaaa ggagtcagaa aggacctcaa       780
     gggcctccac cagcagggct tctgcactga                                        810
//