Dbfetch

Dbfetch

ID   MN240559; SV 1; linear; genomic DNA; STD; HUM; 1068 BP.
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AC   MN240559;
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DT   27-AUG-2019 (Rel. 141, Created)
DT   27-AUG-2019 (Rel. 141, Last updated, Version 1)
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DE   Homo sapiens isolate 20190705 MHC class II antigen (HLA-DQA1) gene,
DE   HLA-DQA1*01var allele, complete cds.
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KW   .
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RP   1-1068
RA   Fuerst D., Tsamadou C., Gowdavally S., Neuchel C., Mytilineos J.;
RT   "HLA-DQA1*01var, a novel HLA-DQA1 allele";
RL   Unpublished.
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RN   [2]
RP   1-1068
RA   Fuerst D., Tsamadou C., Gowdavally S., Neuchel C., Mytilineos J.;
RT   ;
RL   Submitted (30-JUL-2019) to the INSDC.
RL   Transplant Immunology, Institute for Clinical Transfusion Medicine Ulm,
RL   Helmholtzstr.10, Ulm, BW 89077, Germany
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DR   MD5; 0f4ac87c79474fb00324cf89ce7f3bb1.
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CC   ##Assembly-Data-START##
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..1068
FT                   /organism="Homo sapiens"
FT                   /isolate="20190705"
FT                   /mol_type="genomic DNA"
FT                   /tissue_type="Blood"
FT                   /db_xref="taxon:9606"
FT   gene            <1..>1068
FT                   /gene="HLA-DQA1"
FT                   /allele="HLA-DQA1*01var"
FT   mRNA            join(<1..82,183..431,532..813,914..>1068)
FT                   /gene="HLA-DQA1"
FT                   /allele="HLA-DQA1*01var"
FT                   /product="MHC class II antigen"
FT   CDS             join(1..82,183..431,532..813,914..1068)
FT                   /codon_start=1
FT                   /gene="HLA-DQA1"
FT                   /allele="HLA-DQA1*01var"
FT                   /product="MHC class II antigen"
FT                   /protein_id="QEG53643.1"
FT                   /translation="MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPS
FT                   GQYTHEFDGDEEFYVDLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKCYN
FT                   STAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSF
FT                   LSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCA
FT                   LGLSVGLVGIVVGTVFIIQGLRSVGASRHQGPL"
FT   gap             83..182
FT                   /estimated_length=unknown
FT   gap             432..531
FT                   /estimated_length=unknown
FT   gap             814..913
FT                   /estimated_length=unknown
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SQ   Sequence 1068 BP; 165 A; 201 C; 204 G; 198 T; 300 other;
     atgatcctaa acaaagctct gctgctgggg gccctcgctc tgaccaccgt gatgagcccc        60
     tgtggaggtg aagacattgt ggnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       120
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       180
     nnctgaccac gttgcctctt gtggtgtaaa cttgtaccag ttttacggtc cctctggcca       240
     gtacacccat gaatttgatg gagatgagga gttctacgtg gacctggaga ggaaggagac       300
     tgcctggcgg tggcctgagt tcagcaaatt tggaggtttt gacccgcagg gtgcactgag       360
     aaacatggct gtggcaaaac acaacttgaa catcatgatt aaatgctaca actctaccgc       420
     tgctaccaat gnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       480
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn naggttcctg       540
     aggtcacagt gttttccaag tctcccgtga cactgggtca gcccaacacc ctcatttgtc       600
     ttgtggacaa catctttcct cctgtggtca acatcacatg gctgagcaat gggcagtcag       660
     tcacagaagg tgtttctgag accagcttcc tctccaagag tgatcattcc ttcttcaaga       720
     tcagttacct caccttcctc ccttctgctg atgagattta tgactgcaag gtggagcact       780
     ggggcctgga ccagcctctt ctgaaacact gggnnnnnnn nnnnnnnnnn nnnnnnnnnn       840
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       900
     nnnnnnnnnn nnnagcctga gattccagcc cctatgtcag agctcacaga gactgtggtc       960
     tgcgccctgg ggttgtctgt gggcctcgtg ggcattgtgg tgggcactgt cttcatcatc      1020
     caaggcctgc gttcagttgg tgcttccaga caccaagggc cattgtga                   1068
//