Dbfetch
ID MN208445; SV 1; linear; genomic DNA; STD; HUM; 6130 BP. XX AC MN208445; XX DT 20-FEB-2020 (Rel. 143, Created) DT 20-FEB-2020 (Rel. 143, Last updated, Version 1) XX DE Homo sapiens clone NGS-1213055 MHC class II antigen (HLA-DQA1) gene, DE HLA-DQA1*01:01:01:NEW allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-6130 RA Vianna R., Porto L.C.; RT ; RL Submitted (15-JUL-2019) to the INSDC. RL Laboratorio de Histocompatibilidade e Criopreservacao - HLA/UERJ, Rio de RL Janeiro State University, Av Marechal Rondon 381, Rio de Janeiro, RJ RL 20950-003, Brazil XX DR MD5; 3c640eb44433e86b3f0c3eeb6bf93454. XX CC ##Assembly-Data-START## CC Assembly Method :: Omixon HLA Twin v. 3.1.3; TypeStream CC Visual v. 1.3.0 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6130 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /clone="NGS-1213055" FT /db_xref="taxon:9606" FT gene <282..>5595 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:01:01:NEW" FT mRNA join(<282..363,4139..4387,4801..5082,5441..>5595) FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:01:01:NEW" FT /product="MHC class II antigen" FT CDS join(282..363,4139..4387,4801..5082,5441..5595) FT /codon_start=1 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:01:01:NEW" FT /product="MHC class II antigen" FT /protein_id="QIB00609.1" FT /translation="MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPS FT GQYTHEFDGDEEFYVDLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYN FT STAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSF FT LSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCA FT LGLSVGLVGIVVGTVFIIQGLRSVGASRHQGPL" XX SQ Sequence 6130 BP; 1759 A; 1313 C; 1339 G; 1719 T; 0 other; aagattccaa ttgagtgtcc tccctttatt catagaacaa ttcctcaagt ccactctgag 60 tagaggctgc atcacaaggg gattgccccg tctccttcca gggctcttaa tacaaactct 120 tcaactagta actgagatgt caccataggg gatttttcta attggccaaa acctgacttg 180 gcagggtttg gtttgggtgt cttcagattt ccttgtcttg aggtcctcac aattactcta 240 cagctcagaa caccaactgc tgaggctgcc ttgggaagag gatgatccta aacaaagctc 300 tgctgctggg ggccctcgct ctgaccaccg tgatgagccc ctgtggaggt gaagacattg 360 tgggtgagtg catgagtgag ggatgttctc tggagctgaa aaacagtaaa ttgaaggaaa 420 agagataaag cgatttgcag agaaactgta gagatttcct aagggccctt tcagtattaa 480 gacaattaaa aattatagct gttcctcctt caggaaacca gagccccaac ctactctttt 540 tgttatctat gctgttgtgt tcactaagga cgctattctg tttatattat attcagtgac 600 tacagcctgg aggtctctat gtcgttccgt catgattgcc tcaaaaatta gtgaggtttc 660 catcagtgga taatttttta ttattaaaaa tttatgaagt gtcattctca aatttccctg 720 aacaactttt gaagcttttc ggatatctcc ggtggtagat cttggggtca ttccatcaat 780 tatgtactct atagatattt aaaatgttgc ccatttcttt ctctcagact tacttacatt 840 tccacatggg aactggcaca ggtggggagt gggtaaagga gtccagcagg ctgaatgcct 900 tcaacaatca ttttaccaca tggtcctcac ttactctcag ctgcctcata tgtgtcacct 960 cacaagtaat caaataaaat gggcatgtgg ctaagctttg taaatagtga aaacatgaat 1020 gtcaattttt tttacatatt tctattacag atatagcttc acatttcttt tctttagcaa 1080 aataagggat cattttattt taaaattgag aagtagaaaa aattggtaaa ataaatcatt 1140 ttattctcaa attatcaacc caaattacct gttcttcacc tcatctaata aagtcctata 1200 aaaagaaaag tgggccagag aaggtggctc atgcctgtaa tcccagcact ttgggaggcc 1260 gaggcaggag gatcatttga gcctgggagc ttgagaccag cctgggcaac atagcaagac 1320 ctcatctcta caaaaaaaga aaaataaaaa ttagccaggc atggtggtgt gtgcctgtgg 1380 tgccagctac tcagaaggct gccgtgggag gaccacttga gtccatgagg cggaagctgc 1440 agtgagccat ggtggcacca ctacactcca gccagggcaa cagagagaga cgctgtctca 1500 aaaagaaaga ggaaagaaag cgaggaagga aggaaggaag gaaggagaag gaaggaagga 1560 aggaaaagaa aagaaaaggg aagggaggaa ggaaggaaaa aagaaagaca gaaagaaaga 1620 ggaaggaaag aagaaaggaa gcacagataa ttatttggtc tcttactctc ctctgccttt 1680 gtcgtccatc tctttccacc tctcttcatg catccctttc tccctcttcc ctttcaggat 1740 ccatctctga ctccctgctc ctttatagag atggacagtg ggtttgtaaa acaaaagttg 1800 aaaagtcaga tagttaaaag gggaagtgaa ctggaaggta ccttaaactt tcacaacttt 1860 attaaccgtg gctgctccca ttatgatttt gttcggcagt ggaagtttca cctgcttctc 1920 cagagcactt ggcgtctttg ttccaaattt cctttcttca acctcacacc agagtgccct 1980 ggtcaggctt ggctcattca ttaggcacaa tgtgggcagt gcaggggacc ctccatactg 2040 taaagccaca tgagaaggtt ttaactcgtt ttaaaattag aaaaataatg gaatattaga 2100 gcctaagaaa atgttttaac ttttaattca gcctagatta tattgtcttt ataccaattc 2160 agtcataaaa tataattttc catatttttg tggaggaaga ggcccataca agcaagaatg 2220 ctcggggctc acatgtcaga atgcagcctt ggtcatgact gatcctggcc ttcgtatggt 2280 tctgctacct gtgtgcctgc ccgtcttccc caaaatctat gtggtcctcg aatatagcaa 2340 ctgtcattca acacacatgt ttgagcacac agtgagctaa gttttaagga ttcaaagatg 2400 aaaaatcatg ctgtcttccc tgcagagggt gctcagatta gtgatggaaa cagtatgggg 2460 tgcaggaaag cagaaggcca ttgctgagca gggcagtgga cccagcagag gctgaaacaa 2520 tacaagtgac ttggttccag gtgggccagc agggtgacgt cctctagcaa aatttggcac 2580 ccaagacaag taccagaaga aaagaaagac tgcatgtatt ccacatatat tcatgtttga 2640 acaaggagtc aagatttatg gcaaggataa ggaggctttg ttggtgacct gttaagacca 2700 accagggcag tcatgctgga tagggaagaa ggtgagctgg aagaggaaca gacaaacttg 2760 gacagccaga tgttgagacg gaggggttgg aggtcataat gtggtcaaaa acatgttgat 2820 gagaggactc agctacaaag ttgttaactt aagcagaaac ctcaaggatg gattttagaa 2880 tttctccagg aagtcctaaa agataattcc atttcaggga gaaaaacaac agaccactgc 2940 aaagaccagg gaacatgaaa ggataatgta gtttgtcttg cttggcagat acttttgaag 3000 gatgttggac tgtaaggctg tcgatatcct cctcagagaa cttactacag tacattgtat 3060 ctgttccctt acctacctga ctcttccact attcagtttg ttccttaatg gtagaccatg 3120 cctgattggt gttttacaca tctccggcta tgtctgacac ttgtggatgc tcagaaagtg 3180 gggaaggaag gaaagatacg atggtaaaag gcttacacat gtcttgacaa aaaagtccag 3240 tttggctcat ttggctggag tcgtactgca tggctgccat tctgctctgg catcctcaga 3300 caagcacact gcccattaga ggaaaaagtg tgaatataag tgttgagtca gaatgctgta 3360 gacatttagt aacctccttc acaggaaaaa aaaaaaggtg gggggaatga cagaaatcca 3420 aaaactagta gagcttccac ttttcatttc agaagaaatc agttgctctc ctctaaggac 3480 cattactatt aacaaaacag agaccttaga aggaggcatt gtttatttat tatatatttt 3540 gtaatgttat taccaatctt gttatactct ttcttatacc ctacaattgt tagcagaaat 3600 tattttaaat taataagatc ctgcatgctt ttcctttaaa aaaaaaaaaa aaaaagaaag 3660 atctctgtgt agagtgtcct attctgagcc agtcctgaga ggaaaggaag tataatcaat 3720 ttgttattaa ccaatgaaag aattaagtga aagataaatc tcaggaagca gagggaagta 3780 aacctaattt ctgactaaga aagctaaata ctatgataac ttattcattc cttcttttgt 3840 tcaattacat tatttaatca taagtccatg acgtgccagg cactcaggaa atagtaaaaa 3900 ttggacatgt gatattctgc ccttgtgtag cgcacactag agtgggaaag aaagtgcact 3960 tttaactgga caactaccaa catgaagagg ggaggaagca ggggctggaa atgtccacag 4020 actgtgccaa aaaatgaagc ccataatatt tgaaagtcag tttcttccat cattttgtgt 4080 attaaggttc tttcttcccc tgttctccgc ctacctgctt gtcatcttca ctcatcagct 4140 gaccacgttg cctcttgtgg tgtaaacttg taccagtttt acggtccctc tggccagtac 4200 acccatgaat ttgatggaga tgaggagttc tacgtggacc tggagaggaa ggagactgcc 4260 tggcggtggc ctgagttcag caaatttgga ggttttgacc cgcagggtgc actgagaaac 4320 atggctgtgg caaaacacaa cttgaacatc atgattaaac gctacaactc taccgctgct 4380 accaatggta tgcgtccacc attctgcctc tctttactta agctatccct ccataccagg 4440 gttcattatt ttcttcccaa gaggtcccca gatcttctta tggcaattgc tgaaatttta 4500 tcatctccca tctctaaaat cacatattcc catgtaatac aagggtcttt ccattatgca 4560 ttcagcaaat ccttctagga gaggtctcat caacctccta ctttattaaa catgcccaca 4620 gagagaaggg cacaggaata aagcagaggc aatgtgtcgt tgctcccaag cagaaggtaa 4680 ataagacctc tttgactatc aggtggtgaa atgctggtag gagggctctt ccaggatgta 4740 atgcagaact tcagggcaga gctattcaca cttcacacca gtgctgtttc ctcaccacag 4800 aggttcctga ggtcacagtg ttttccaagt ctcccgtgac actgggtcag cccaacaccc 4860 tcatttgtct tgtggacaac atctttcctc ctgtggtcaa catcacatgg ctgagcaatg 4920 ggcagtcagt cacagaaggt gtttctgaga ccagcttcct ctccaagagt gatcattcct 4980 tcttcaagat cagttacctc accttcctcc cttctgctga tgagatttat gactgcaagg 5040 tggagcactg gggcctggac cagcctcttc tgaaacactg gggtaaggat gagtttcatc 5100 attttttgat tctttcttgt ctgtcaagtt cagaacttcc tgccttttac tcctatatcc 5160 aaaaacttgt tttccacact tcatgggttt cttttctgtc tctctttttt ttttttgaaa 5220 gaataaagca aaaaaagcag agatttattg aaaatgaaag tacactctac aggatgggag 5280 tgggcctgcc acttcatggt tttctaatga tagacttcac tcttctccct aagctggggg 5340 ccttgagtct ttgcagagcc aaccctctac cccatcccat cccacacaca tgcacatgag 5400 caaactctgc attctgacct caacaacttc acttccacag agcctgagat tccagcccct 5460 atgtcagagc tcacagagac tgtggtctgc gccctggggt tgtctgtggg cctcgtgggc 5520 attgtggtgg gcactgtctt catcatccaa ggcctgcgtt cagttggtgc ttccagacac 5580 caagggccat tgtgaatccc atcctggaag ggaaggtaag attgagactg gttacagttg 5640 aagcggcagt atgaaaggaa ggaaagtggg agggcgttgt ggacatgaat gtggttgaaa 5700 gttgtagggg aattgggaag tggcatgatg atgacacagg aggcccctcg gacccatcga 5760 tctcatgtct gccctgttgc aggtgcatcg ccatctacag gagcagaaga gtggacttgc 5820 tacatgacct agcactattc tctggcccga tttatcatat cccttttctc ctccaaatat 5880 ttctcctctc accttttctc tgggacttaa gctgctatat cccctcagag ctcacaaatg 5940 tctttacatt ctttccctga cctcctgatt ttttttttct tttctcaaat gttacctaca 6000 aagacatgcc tggggtaagc cacccggcta cctaattcct cagtaacctc catctaaaat 6060 ctccaaggaa gcaataaatt ccttttatga gatctatgtc aaattttccc atctttcatc 6120 cagggctgac 6130 //