Dbfetch
ID MN187937; SV 1; linear; genomic DNA; STD; HUM; 3073 BP. XX AC MN187937; XX DT 15-OCT-2019 (Rel. 142, Created) DT 15-OCT-2019 (Rel. 142, Last updated, Version 1) XX DE Homo sapiens isolate NG31_SH_244C MHC class I antigen (HLA-A) gene, DE HLA-A*11:01:01var allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-3073 RX PUBMED; 31576659. RA Keppen C., Sharma A., Gautam S.K., Khamo V., Kanga U.; RT "Recognition of the novel HLA-A*11:01:01:25 allele in the tribal population RT of Nagaland, North-East India"; RL HLA 0:0(2019). XX RN [2] RP 1-3073 RA Kanga U., Keppen C., Khamo V., Sharma A., Abid M., Gautam S.K., Medhi S.; RT ; RL Submitted (17-JUL-2019) to the INSDC. RL Transplant Immunology and Immunogenetics, All India Institute of Medical RL Sciences, Ansari Nagar, New Delhi, Delhi 110029, India XX DR MD5; b0ce7a518b98c7d0478d9aa8053e9f3b. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. v2.13.0 CC Assembly Name :: HLA-A CC Coverage :: Full gene CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3073 FT /organism="Homo sapiens" FT /isolate="NG31_SH_244C" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="CK" FT /sex="female" FT /tissue_type="whole blood" FT /note="subgroup: Rengma" FT /db_xref="taxon:9606" FT gene <1..>3073 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01var" FT mRNA join(<1..180,311..580,822..1097,1677..1952,2055..2171, FT 2614..2646,2789..2836,3006..>3073) FT /gene="HLA-A" FT /allele="HLA-A*11:01:01var" FT /product="MHC class I antigen" FT exon <1..180 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01var" FT /number=1 FT 5'UTR <1..107 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01var" FT CDS join(108..180,311..580,822..1097,1677..1952,2055..2171, FT 2614..2646,2789..2836,3006..3010) FT /codon_start=1 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01var" FT /product="MHC class I antigen" FT /protein_id="QFG58547.1" FT /translation="MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPR FT FIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGT FT LRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMA FT AQITKRKWEAAHAAEQQRAYLEGRCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPKPLTLRWELSSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRK FT GGSYTQAASSDSAQGSDVSLTACKV" FT intron 181..310 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01var" FT /number=1 FT exon 311..580 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01var" FT /number=2 FT intron 581..821 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01var" FT /number=2 FT exon 822..1097 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01var" FT /number=3 FT intron 1098..1676 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01var" FT /number=3 FT exon 1677..1952 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01var" FT /number=4 FT intron 1953..2054 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01var" FT /number=4 FT exon 2055..2171 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01var" FT /number=5 FT intron 2172..2613 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01var" FT /number=5 FT exon 2614..2646 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01var" FT /number=6 FT intron 2647..2788 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01var" FT /number=6 FT exon 2789..2836 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01var" FT /number=7 FT intron 2837..3005 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01var" FT /number=7 FT exon 3006..>3073 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01var" FT /number=8 FT 3'UTR 3011..>3073 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01var" XX SQ Sequence 3073 BP; 591 A; 881 C; 956 G; 645 T; 0 other; tcccattggg tgtcgggttt ccagagaagc caatcagtgt cttcgcggtc gctcttctaa 60 agtccgcacg cacccaccgg gactcagatt ctccccagac cccgaggatg gccgtcatgg 120 cgccccgaac cctcctcctg ctactctcgg gggccctggc cctgacccag acctgggcgg 180 gtgagtgcgg ggtcgggagg gaaaccgcct ctgcggggag aagcaaggag ccctcctggc 240 gggggcgcag gaccggggga gccgcgccgg gaggagggtc gggcaggtct cagccactgc 300 tcgcccccag gctcccactc catgaggtat ttctacacct ccgtgtcccg gcccggccgc 360 ggggagcccc gcttcatcgc cgtgggctac gtggacgaca cgcagttcgt gcggttcgac 420 agcgacgccg cgagccagag gatggagccg cgggcgccgt ggatagagca ggaggggccg 480 gagtattggg accaggagac acggaatgtg aaggcccagt cacagactga ccgagtggac 540 ctggggaccc tgcgcggcta ctacaaccag agcgaggacg gtgagtgacc ccggcccggg 600 gcgcaggtca cgacccctca tcccccacgg acgggccagg tggcccacag tctccgggtc 660 cgagatccac cccgaagccg cgggaccccg agacccttgc cccgggagag gcccaggcgc 720 ctttacccgg tttcattttc agtttaggcc aaaaatcccc ccgggttggt cggggccggg 780 cagggcttgg gggactgggc tgaccgcggg gtcggggcca ggttctcaca ccatccagat 840 aatgtatggc tgcgacgtgg ggccggacgg gcgcttcctc cgcgggtacc ggcaggacgc 900 ctacgacggc aaggattaca tcgccctgaa cgaggacctg cgctcttgga ccgcggcgga 960 catggcagct cagatcacca agcgcaagtg ggaggcggcc catgcggcgg agcagcagag 1020 agcctacctg gagggccggt gcgtggagtg gctccgcaga tacctggaga acgggaagga 1080 gacgctgcag cgcacgggta ccaggggcca cggggcgcct ccctgatcgc ctatagatct 1140 cccgggctgg cctcccacaa ggaggggaga caattgggac caacactaga atatcaccct 1200 ccctctggtc ctgagggaga ggaatcctcc tgggtttcca gatcctgtac cagagagtga 1260 ctctgaggtt ccgccctgct ctctgacaca attaagggat aaaatctctg aaggagtgac 1320 gggaagacga tccctcgaat actgatgagt ggttcccttt gacaccggca gcagccttgg 1380 gcccgtgact tttcctctca ggccttgttc tctgcttcac actcaatgtg tgtgggggtc 1440 tgagtccagc acttctgagt ctctcagcct ccactcaggt caggaccaga agtcgctgtt 1500 cccttctcag ggaatagaag attatcccag gtgcctgtgt ccaggctggt gtctgggttc 1560 tgtgctctct tccccatccc gggtgtcctg tccattctca agatggccac atgcgtgctg 1620 gtggagtgtc ccatgacaga tgcaaaatgc ctgaattttc tgactcttcc cgtcagaccc 1680 ccccaagaca catatgaccc accaccccat ctctgaccat gaggccaccc tgaggtgctg 1740 ggccctgggc ttctaccctg cggagatcac actgacctgg cagcgggatg gggaggacca 1800 gacccaggac acggagctcg tggagaccag gcctgcaggg gatggaacct tccagaagtg 1860 ggcggctgtg gtggtgcctt ctggagagga gcagagatac acctgccatg tgcagcatga 1920 gggtctgccc aagcccctca ccctgagatg gggtaaggag ggagatgggg gtgtcatgtc 1980 tcttagggaa agcaggagcc tctctggaga cctttagcag ggtcagggcc cctcaccttc 2040 ccctcttttc ccagagctgt cttcccagcc caccatcccc atcgtgggca tcattgctgg 2100 cctggttctc cttggagctg tgatcactgg agctgtggtc gctgccgtga tgtggaggag 2160 gaagagctca ggtggagaag gggtgaaagg tggggtctga gatttcttgt ctcactgagg 2220 gttccaagcc ccagctagaa atgtgccctg tctcattact gggaagcacc ttccacaatc 2280 atgggccgac ccagcctggg ccctgtgtgc cagcacttac tcttttgtaa agcacctgtt 2340 aaaatgaagg acagatttat caccttgatt acggcggtga tgggacctga taccagcagt 2400 cacaagtcac aggggaaggt ccctgaggac agacctcagg agggctattg gtccaggacc 2460 cacacctgct ttcttcatgt ttcctgatcc cgccctgggt ctgcagtcac acatttctgg 2520 aaacttctct ggggtccaag actaggaggt tcctctagga ccttaaggcc ctggctcctt 2580 tctggtatct cacaggacat tttcttccca cagatagaaa aggagggagt tacactcagg 2640 ctgcaagtaa gtatgaagga ggctgatgcc tgaggtcctt gggatattgt gtttgggagc 2700 ccatggggga gctcacccac cccacaattc ctcctctagc cacatcttct gtgggatctg 2760 accaggttct gtttttgttc taccccaggc agtgacagtg cccagggctc tgatgtgtct 2820 ctcacagctt gtaaaggtga gagcttggag ggcctgatgt gtgttgggtg ttgggcggaa 2880 cagtggacac agctgtgcta tggggtttct ttgcattgga tgtattgagc atgcgatggg 2940 ctgtttaagg tgtgacccct cactgtgatg gatatgaatt tgttcatgaa tatttttttc 3000 tatagtgtga gacagctgcc ttgtgtggga ctgagaggca agagttgttc ctgcccttcc 3060 ctttgtgact tga 3073 //