Dbfetch
ID MN187921; SV 1; linear; genomic DNA; STD; HUM; 4857 BP. XX AC MN187921; XX DT 15-OCT-2019 (Rel. 142, Created) DT 15-OCT-2019 (Rel. 142, Last updated, Version 1) XX DE Homo sapiens isolate NG26_AM_72C nonfunctional MHC class II antigen DE (HLA-DPA1) gene, HLA-DPA1*01var allele, partial sequence. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-4857 RX PUBMED; 31576659. RA Keppen C., Sharma A., Gautam S.K., Khamo V., Kanga U.; RT "Recognition of the novel HLA-A*11:01:01:25 allele in the tribal population RT of Nagaland, North-East India"; RL HLA 0:0(2019). XX RN [2] RP 1-4857 RA Kanga U., Keppen C., Khamo V., Sharma A., Abid M., Gautam S.K., Medhi S.; RT ; RL Submitted (16-JUL-2019) to the INSDC. RL Transplant Immunology and Immunogenetics, All India Institute of Medical RL Sciences, Ansari Nagar, New Delhi, Delhi 110029, India XX DR MD5; 3d981d0230c680aee395ee4fdfcaa0d5. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. v2.13.0 CC Assembly Name :: HLA-DPA1 CC Coverage :: Partial CDS CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4857 FT /organism="Homo sapiens" FT /isolate="NG26_AM_72C" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="CK" FT /sex="male" FT /tissue_type="whole blood" FT /note="subgroup: Lotha" FT /db_xref="taxon:9606" FT gene <1..>4857 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*01var" FT /note="nonfunctional MHC class II antigen; null allele" FT exon <1..73 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*01var" FT /number=1 FT /note="DPA1" FT intron 74..3657 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*01var" FT /number=1 FT /note="DPA1" FT exon 3658..3903 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*01var" FT /number=2 FT /note="DPA1" FT intron 3904..4243 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*01var" FT /number=2 FT /note="DPA1" FT exon 4244..4525 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*01var" FT /number=3 FT /note="DPA1" FT intron 4526..4739 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*01var" FT /number=3 FT /note="DPA1" FT exon 4740..>4857 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*01var" FT /number=4 FT /note="DPA1" XX SQ Sequence 4857 BP; 1255 A; 1161 C; 945 G; 1496 T; 0 other; atcagagctg tgatcttgag agccctctcc ttggctttcc tgctgagtct ccgaggagct 60 ggggccatca agggtgagtg ctcaggagga cgcaggagcg tcggggtgag tgatggggtg 120 gttcacatca attgctgctt cagggatcac agattttagg ggctcattga tctatctggt 180 cctcatagtc tatgttccct ctggccctca taataataac agcaataaca gccagaattt 240 atgagactcc tgcatagttt ctttccccat ttacatctca caggaatctt caatgaagat 300 aatattccat tcatttagaa attattcctt ttatttagaa attattttga aaaaactgaa 360 gctcaaaaag atgaataagt tttccaaggt tacacagcag atcaacgagc caagtttgaa 420 gtccagaccc agctctgagg gtcatacact gccttcccca gattcctgca cacagtgacc 480 tactatcagg gccctcctat ctctctggga tccccagcct ctatcttttg tggctgcttt 540 acaggaactc cgagctatgg actctgcatt aggagacgaa gtgcaaagag tgtttctgta 600 tcctccctct cttctaggac cctagggctc ttcctgggtc tttgtgggtg gtcacaagct 660 ttcctctctc aagacagcag ggttgcatgg tcttgatagc cttgtgattc gggttctgag 720 agattcagga ctgcaaggga ggcctagact tttgatagct gcaaggactc agccagagat 780 ggaccgtagt gaatgctcct ttttcctgta gctgaaatca gggagaatga catcaagcct 840 gtgcatgatg ctgtcattcc aaaatctagt gatggggaag gttagaatcc ataacgtaca 900 agatgcacac tggcttcaga cagttttatt taagatgtgt agaataaaga ggaggtcagg 960 ctgggtagaa ccagaagtat ctattgccct gttcgcggtc acctgagtta tttctaatgt 1020 tatgttataa taaacaccac aataggcttc tcttcataga tgcaaatact ttttagtatt 1080 cttggtagaa attcctaatg agctcagctg tctcttcagg gcttccctgc ccagtctctt 1140 aacatttaaa catgtcattt accttaaaaa cataagtgca aaccaactga taaaaaacaa 1200 ccttgccttc agtctgcatc ctgtcccaga gacactttct ttgtgtcctc acacgtggag 1260 ctaagcttct gacttgtctc tggtacatcc ctgaggatcc tctcatcttg gccatcagga 1320 acctctacag aaggtcaaat tcagtgggtt cttctcagtg cctctgactt gagttactaa 1380 taacatttgc actataatcc acttctttct gatgaactac cctgtcctta tttttctcct 1440 gtttacctgg atcctcctta tcatctttta aaccacctct taactatcat gttctctcat 1500 tataccctga gatctcggca attctgattt ttggcactct tcctggaaaa tcttatttaa 1560 cctgcacctg ccactaatga ctctcagttc tatggcctaa attcctctcc tgagaccacc 1620 cataatccac aaatatctat gtattatttc tccttagatg actttcaggt cttctaagtg 1680 caatagcccc acagtgaact cagtatcttc tcccggtcag gctgtcttcc ctgagagaag 1740 tggcttttgc cctgttttct gaatgcctac attgaagcca tctgttcccc aggaagcctt 1800 ccctgatgtg ctgtttggtc gcatcttgtg tatacctacg tatctgcact tatccttctg 1860 aacctgctgt tgtcctgtca cttgtgtttc cttctgtgac ttatacgcgt ctgcagaaca 1920 ggacgtatgt attattttta tttgggtatt tagcatctaa cagtgtttga catatagtag 1980 tcttttaata catatttttg tctgaatgga aatgatattt tgaagaaaaa taatctgttc 2040 catagctggc tgatctttgg actgcagaac ttgtgaaagt gttttttaaa aagcatttta 2100 aaaagtacaa gggacattca tgtattaaga agatgagttt ccaataactg ctagaggact 2160 ttgtgtcttt ttattttacc ctctttttcc tgatgagtcc tttgagtcct ttaaactgag 2220 gagcaagcta agtttcctag tgaaatacct ataggatttg ttttgtttag tttcaaatac 2280 cactctttgc ttggccactt actgtgtcag ggagtcattc tcagtgaaaa ataagacaca 2340 ggtcataccc tctagacact tacaattaca gtggcaagga gtcattctcc tgtcactgta 2400 agtggccaag cacagactgg gtccccacat gtcagggctg aaaactcaca gggaaatctg 2460 tgagttggga ggtgagagca gaagagtccc gtagttcctt ctcactctga tgcatttatc 2520 attctaaacc cagactttca catacacatt catcgttttc tttcatgata atagttgctt 2580 ttatcctctt atctttgcta attcttacaa actaataaag actaagaaac aaaataaatt 2640 aaatcctaca ggtgttccaa actcagcaat aatttctagt tggcctctaa aacaaaaatc 2700 aaaatataaa tgtaagaaaa gtttagaatg cttagtacct gtgtgatgaa ataatctgta 2760 cactaaaccc ccaagtcatg agtttaccta tacaacaaac ctgcacatgt actcctgaac 2820 ataaaataaa tgttgaaata tttttaaaaa ggaaacaaaa gtttggaaca aatgccaaaa 2880 taactgtact gtacttttga atttatatgc cccaaatgaa aaatattatc aacaaagcta 2940 tacattctac agtttcatgt tcataaacta agacagaaac tttaaaactg tcaagagccc 3000 taaaatttga aggatatttt cttcttcctc tcaattttgt atttttttct accttttcta 3060 taataagaaa aagaaaatgt ccattccccc acccccatga ctctaaaaac aattttacat 3120 ctgtgtcata gaaaaattaa gatcttaatg ggagagaaaa cctctctact agttccgcca 3180 gtagccgtat gaccttagca agttattaat atgtaacttc cctgcatttc cttacctgta 3240 aaatgtatga tatgtatttg cttcataggg ttattgtgac aattcagcga ctgaaatatg 3300 taaagtattt agaaggatgc ctggcacaag taagtgctca acaaatgtta gctgtcattg 3360 ttactattac tattgtgtag ggtcaggatg cccagacttt caaagaccag gaagcagctt 3420 gacttatcag tgataaactt ttcattttgt tctttgctcc tttcttttta taactgctca 3480 tctgctctgt attatttcct ttatggtgtt gctccttctt cttccccata tgtccttcct 3540 ttgacctctt accttcttcc tttttatatt cataagtctt tattcattct ctagctttga 3600 ccacttgcat attcaaactg acattttgtc gtgtttttct ctactgtctt tatgcagcgg 3660 accatgtgtc aacttatgcc gcgtttgtac agacgcatag accaacaggg gagtttatgt 3720 ttgaatttga tgaagatgag atgttctatg tggatctgga caagaaggag accgtctggc 3780 atctggagga gtttggccaa gccttttcct ttgaggctca gggcgggctg gctaacattg 3840 ctatattgaa caacaacttg aataccttga tccagcgttc caaccacact caggccacca 3900 acggtacgcc ctatctttgc ctcttcctct gtagcccaac tggaagggat gagagggcct 3960 ctctgccacc ctcagactag gaagcctaag tgccccctgc tgtgtgatcc tcttccccta 4020 gtggccatgg gctgatccca ctacagcaag ggcttgcatc ctctcttctc aggagagaga 4080 aaggtgagca gagtgaggct ggtcagtggt gtgatacccc tgtctgtgat tcagagctgc 4140 cataaaatct aaggctgagg tagaggacca ccctccccta agaggtggag cctttgtgat 4200 tcatcccaga agaggggcct aacctggtgc tgtctccttc cagatccccc tgaggtgacc 4260 gtgtttccca aggagcctgt ggagctgggc cagcccaaca ccctcatctg ccacattgac 4320 aagttcttcc caccagtgct caacgtcacg tagctgtgca acggggagct ggtcactgag 4380 ggtgtcgctg agagcctctt cctgcccaga acagattaca gcttccacaa gttccattac 4440 ctgacctttg tgccctcagc agaggacttc tatgactgca gggtggagca ctggggcttg 4500 gaccagccgc tcctcaagca ctggggtatg caactgcttt tctctccata atctcctggc 4560 atcctctatt ccaaagacct ggtgtcctct gcaccagctt tccgcactgg ctgggtctca 4620 gtcctctcct cgtcctaaca tccaattaac tggtccataa ccttcaattc ccacaaccat 4680 cccaggccat caccaccctc actgcacctc ctgaccctat ctcttcattc ttcccccaga 4740 ggcccaagag ccaatccaga tgcctgagac aacggagact gtgctctgtg ccctgggcct 4800 ggtgctgggc ctagtcggca tcatcgtggg caccgtcctc atcataaagt ctctgcg 4857 //