Dbfetch
ID MN154551; SV 1; linear; genomic DNA; STD; HUM; 3404 BP. XX AC MN154551; XX DT 20-FEB-2020 (Rel. 143, Created) DT 20-FEB-2020 (Rel. 143, Last updated, Version 1) XX DE Homo sapiens isolate 2018-271-01109 MHC class I antigen (HLA-A) gene, DE HLA-A*29:02:01:01var allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3404 RA York S.L., Ivery K.J., Williams J.D.; RT ; RL Submitted (08-JUL-2019) to the INSDC. RL DNA Identity, LabCorp, 1440 York Ct, Burlington, NC 277215, USA XX DR MD5; 992c314df06aa12ca1f513fa53b2c805. XX CC ##Assembly-Data-START## CC Assembly Method :: LAA2 v. 10/2018 CC Coverage :: >100 X CC Sequencing Technology :: PacBio CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3404 FT /organism="Homo sapiens" FT /isolate="2018-271-01109" FT /mol_type="genomic DNA" FT /country="Argentina" FT /db_xref="taxon:9606" FT gene <248..>3165 FT /gene="HLA-A" FT /allele="HLA-A*29:02:01:01var" FT mRNA join(<248..320,450..719,961..1236,1837..2112,2212..2328, FT 2769..2801,2944..2991,3161..>3165) FT /gene="HLA-A" FT /allele="HLA-A*29:02:01:01var" FT /product="MHC class I antigen" FT CDS join(248..320,450..719,961..1236,1837..2112,2212..2328, FT 2769..2801,2944..2991,3161..3165) FT /codon_start=1 FT /gene="HLA-A" FT /allele="HLA-A*29:02:01:01var" FT /product="MHC class I antigen" FT /protein_id="QIA58942.1" FT /translation="MAVMAPRTLLLLLLGALALTQTWAGSHSMRYFTTSVSRPGRGEPR FT FIAVGYVDDTQFVRFDSDAASQRMEPRAPWTEQEGPEYWDLQTRNVKAQSQTDRANLGT FT LRGYYNQSEAGSHTIQMMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMA FT AQITQRKWEAARVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHE FT ATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRY FT TCHVQHEGLPKPLTLRWEPSSQPTIPIVGIIAGLVLFGAVFAGAVVAAVRWRRKSSDRK FT GGSYSQAASSDSAQGSDMSLTACKV" XX SQ Sequence 3404 BP; 639 A; 982 C; 1042 G; 741 T; 0 other; gtctcaggcc ccgaaggcgg tgtatggatt ggggagtccc agccttgggg attccccaac 60 tccgcagttt cttttctccc tctgccaacc tatgtagggt ccttcttcct ggatactcac 120 gacgcggacc cagttctcac tcccattggg tgtcgggttt ccagagaagc caatcagtgt 180 cgtcgcggtc gcggttctaa agtccgcacg cacccaccgg gactcagatt ctccccagac 240 gccgaggatg gccgtcatgg cgccccgaac cctcctcctg ctactcttgg gggccctggc 300 cctgacccag acctgggcgg gtgagtgcgg ggtcgtgggg aaaccgcctc tgcggggaga 360 agcaaggggc ccgcccggcg gggacgcagg acccgggtag ccgcgccggg aggagggtcg 420 ggtgggtctc agccactcct cgcccccagg ctcccactcc atgaggtatt tcaccacatc 480 cgtgtcccgg cccggccgcg gggagccccg cttcatcgcc gtgggctacg tggacgacac 540 gcagttcgtg cggtttgaca gcgacgccgc gagccagagg atggagccgc gggcaccgtg 600 gacagagcag gaggggccgg agtattggga cctgcagaca cggaatgtga aggcccagtc 660 acagactgac cgagcgaacc tggggaccct gcgcggctac tacaaccaga gcgaggccgg 720 tgagtgaccc cggcccgggg cgcaggtcac gacctctcat cccccacgga cgggccgggt 780 cgcccacagt ctccgggtcc gagatccacc ccgaagccgc gggaccccga gacccttgcc 840 ccgggagagg cccaggcgcc tttacccggt ttcattttca gtttaggcca aaaatccccc 900 cgggttggtc ggggccggac ggggctcggg ggactgggct gaccgtgggg tcggggccag 960 gttctcacac catccagatg atgtatggct gcgacgtggg gtcggacggg cgcttcctcc 1020 gcgggtaccg gcaggacgcc tacgacggca aggattacat cgccttgaac gaggacctgc 1080 gctcttggac cgcggcggac atggcggctc agatcaccca gcgcaagtgg gaggcggccc 1140 gtgtggcgga gcagttgaga gcctacctgg agggcacgtg cgtggagtgg ctccgcagat 1200 acctggagaa cgggaaggag acgctgcagc gcacgggtac cgggggccac ggggcgcctc 1260 cctgatcgcc tgtagatctc ccgggctggc ctcccacaag gaggggagac aattgggacc 1320 aacactagaa tatcgccctc cctctggtcc tgagggagag gaatcctcct gggtttccag 1380 atcctgtacc agagagtgac tctgaggttc cgccctgctc tctgacacaa ttaagggata 1440 aaatctctga aggaatgacg ggaagacgat ccctcgaata ctgatgagtg gttccctttg 1500 acacacaccg gcagcagcct tgggcccgtg acttttcctc tcaggccttg ttctctgctt 1560 cacactcaat gtgtgtgggg gtctgagtcc agcacttctg agtccctcag cctccactca 1620 ggtcaggacc agaagtcgct gttccctctt cagggactag aattttccac ggaataggag 1680 attatcccag gtgcctgtgt ccaggctggt gtctgggttc tgtgctccct tccccatccc 1740 aggtgtcctg tccattctca agatagccac atgtgtgctg gaggagtgtc ccatgacaga 1800 tgcaaaatgc ctgaatgttc tgactcttcc tgacagacgc ccccaagacg catatgactc 1860 accacgctgt ctctgaccat gaggccaccc tgaggtgctg ggccctgagc ttctaccctg 1920 cggagatcac actgacctgg cagcgggatg gggaggacca gacccaggac acggagcttg 1980 tggagaccag gcctgcaggg gatggaacct tccagaagtg ggcgtctgtg gtggtgcctt 2040 ctggacagga gcagagatac acctgccatg tgcagcatga gggtctgccc aagcccctca 2100 ccctgagatg gggtaaggag ggagatgggg gtgtcatgtc ttttagggaa agcaggagcc 2160 tctctgacct ttagcagggt cagggcccct caccttcccc tcttttccca gagccgtctt 2220 cccagcccac catccccatc gtgggcatca ttgctggcct agttctcttt ggagctgtgt 2280 tcgctggagc tgtggtcgct gctgtgaggt ggaggaggaa gagctcaggt ggggtgaagg 2340 gatgaagggt gggtctgaga tttcttgtct cactgagggt tccaagaccc aggtagaagt 2400 gtgccctgcc tcgttactgg gaagcaccat ccacaattat gggcctaccc agcctgggcc 2460 ctgtgtgcca gcacttactc ttttgtaaag cacctgttaa aatgaaggac agatttatca 2520 ccttgattac ggcggtgatg ggacctgatc ccagcagtca caagtcacag gggaaggtcc 2580 ctgaggacct tcaggagggc ggttggtcca ggacccacac ctgctttctt catgtttcct 2640 gatcccgccc tgggtctgca gtcacacatt tctggaaact tctctgaggt ccaagacttg 2700 gaggttcctc taggacctta aggccctggc tcctttctgg tatctcacag gacattttct 2760 tcccacagat agaaaaggag ggagctactc tcaggctgca agtaagtatg aaggaggctg 2820 atgcctgagg tccttgggat attgtgtttg ggagcccgtg ggggagctca cccaccccac 2880 aattcctcct ctagccacat cttctgtggg atctgaccag gttctgtttt tgtcctaccc 2940 caggcagtga cagtgcccag ggctctgata tgtctctcac agcttgtaaa ggtgagagcc 3000 tggagggcct gatgtgtgtt gggtgttggg cggaacagtg gacgcagctg tgctatgggg 3060 tttctttgca ttggatgtat tgagcatgcg atgggctgtt taaagtgtga ctcctcactg 3120 tgacagatac gaatttgttc atgaatattt ttttctatag tgtgagacag ctgccttgtg 3180 tgggactgag aggcaagatt tgttcctgcc cttccctttg tgacttgaag aaccctgact 3240 ttgtttctgc aaaggcacct gcatgtgtct gtgttcttgt aggcataatg tgaggaggtg 3300 gggagaccac cccaccccca tgtccaccat gaccctcttc ccacgctgac ctgtgctccc 3360 tccccaatca tctttcctgt tccagagagg tggggctgag gtgt 3404 //