Dbfetch
ID MN154513; SV 1; linear; genomic DNA; STD; HUM; 3713 BP. XX AC MN154513; XX DT 20-FEB-2020 (Rel. 143, Created) DT 20-FEB-2020 (Rel. 143, Last updated, Version 1) XX DE Homo sapiens isolate 2018-271-01047 MHC class II antigen (HLA-DQB1) gene, DE HLA-DQB1*03:03:02:02var allele, partial cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3713 RA York S.L., Ivery K.J., Williams J.D.; RT ; RL Submitted (08-JUL-2019) to the INSDC. RL DNA Identity, LabCorp, 1440 York Ct, Burlington, NC 277215, USA XX DR MD5; d23ded42ed680879017e3c76371423ea. XX CC ##Assembly-Data-START## CC Assembly Method :: LAA2 v. 10/2018 CC Coverage :: >100 X CC Sequencing Technology :: PacBio CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3713 FT /organism="Homo sapiens" FT /isolate="2018-271-01047" FT /mol_type="genomic DNA" FT /country="Argentina" FT /db_xref="taxon:9606" FT gene <12..>3713 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:03:02:02var" FT mRNA join(<12..281,2812..3093,3609..>3713) FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:03:02:02var" FT /product="MHC class II antigen" FT CDS join(<12..281,2812..3093,3609..>3713) FT /codon_start=3 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:03:02:02var" FT /product="MHC class II antigen" FT /protein_id="QIA58978.1" FT /translation="DFVYQFKGMCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAV FT TPLGPPDAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEAL FT NHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQRG FT DVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRS" XX SQ Sequence 3713 BP; 971 A; 854 C; 841 G; 1047 T; 0 other; attccccgca gaggatttcg tgtaccagtt taagggcatg tgctacttca ccaacgggac 60 ggagcgcgtg cgtcttgtga ccagatacat ctataaccga gaggagtacg cacgcttcga 120 cagcgacgtg ggggtgtatc gggcggtgac gccgctgggg ccgcctgacg cggagtactg 180 gaacagccag aaggaagtcc tggagaggac ccgggcggag ttggacacgg tgtgcagaca 240 caactaccag ttggagctcc gcacgacctt gcagcggcga ggtgagcgtc gtcgcccgtc 300 tgcgaggccc atccttggca ggggcccaga gtctctgcgc caggaggggc gaagggggcg 360 cggcctctgg aacctgagcc ttgttcgttc caccccggct gacaggagga ggcggtgggg 420 gtgctggggg ctggtgcatc ggaggggcag ggacctaggg cagagcaggg gaacaggcag 480 agttggtcaa gctgcctagt ttcgccccat cctccccgtc cgtcggcctc gccctctgct 540 ctgcacgttc ttgcctcgtg ccttatgcgt ttgcctcctc gtgccttacc tttactaagc 600 agttctctct gcccccaatt tccgccctct tcccctgccc gcccgcccgg ctagcactgc 660 cgcacccggc aaggtccacc tacacagctc atgcagtggg aagcttcaga cttggcctga 720 tggagttagg gctgccccac aactgcgcgc agggcatcca gcaattacag ttgtcaaata 780 agatattttg acttttgact tcaaattatt attcatcgta attctgtttt cttaaatggc 840 tctcattcat ggcggagctc tttgagatga gagtgtttta atcattgcat gcctggtatc 900 tgacacattg actggcatgt ggtatgagct caatgatctt ctgttaaatt aatgaataaa 960 tgtgctcagc tgccaatcca cttaggctca agggaaagca gaggataaat agagccttaa 1020 aaatggactt ttattaatta ttttctgtca ttttgcttaa ttctttaaag taaactctta 1080 ttgacttgga tcttaataga gtttgtgaat acaaagtctg aggaaaaaag tgtttgctaa 1140 aaataaaaac aacacttgaa tgatgtttgt aaggcagttt taatttctta gaaaagctga 1200 acaaatggca caatgcaaag agcagaagtt ttggaataaa tagattgaag caattaaatt 1260 attggataaa aatagtttca ggttgctttt ggcttaggtt ctcccctccc cccatcacta 1320 tccacttcag gaataaacat tctgaaagtc aattttaccc atttagtgag cacttatttc 1380 tagacagtta ccttatcaaa taccgtctat gttacgtcat ttaatctcac agttgcctgt 1440 gcattagaga ttagcatcac cactttatat atcctaatat tagtacatga caaacacttt 1500 aagtaatcag cccacaagta ctcaccaaga ccttaagcct cccaaagtac acaatattct 1560 ttatgttctt cactacacat ctatagagtc aaagggacat aaagccttgt taaagccagt 1620 tttgactaga agcagcaatg agtctcttcc tgtttgatct ccatgttaat gggacaaaat 1680 gatactttca aggcattgaa aatttatgat taatcaatcc ctagtctgac tccagtgtta 1740 cctatgcaga ttcacaaaac ttttagttta ctttaaactc ccttgccttc ttttgactca 1800 catcgtagtg ccagcaagta cttacatttt tgctattttg gttctatttc cataaaattt 1860 attttatcat cttttctcat aagtttgtgc cctctatttt actcccagtc tgtgtaagat 1920 gaacaaatct tataaagcca catagctgac tgtgatttca ggtggactcc aggaaggaga 1980 accaaagaaa agttcaagtc caagcagaaa ccgtgattcc ttccggatga tggctcaaga 2040 gtgcctttta attggggtgc aacctgctga cctcagcaaa tctcagctat atttatatgt 2100 tcacattaca ggctcattaa cctaggctga tctctgcaag gatctcagaa tattttctac 2160 agataacata catgataata tctgatttca ggacaaaaaa gtaattctca atagcaaggg 2220 aatggagtag ggtagacagc tagtaattaa actcacttgt atgttaaaaa taaattaagg 2280 aaaaaaagaa aatgagagaa catattacta aataaagaaa gcatacatta aatatttact 2340 atagtttcac actaagagaa taaaggaaat gcaataaagt ggcctgaaag ataaaggatg 2400 agatgtgtaa agagacaggg aaagatgtgt cattttttta ctatgagcag cagtctgaga 2460 agataaagga atcgagttat gggcaaacat gatgtttgat cagtgttatt tgttttgaag 2520 gcctgcctac ttttgtttca aatattacag acttttgaaa tcacattctt tttgtttttt 2580 gctgtctgtt actagatcgc acattctgta aaggcaggga ccatggtatg ttgtttatct 2640 ttggattctc agtgattgtc atatttatat ttgttgaatg aatcttaatc caagacttgg 2700 actccaggta tctttccact ctggttccaa ggagggacca ttcccaatgg tagacgtgct 2760 gtgtggtctc acatctcact cctgtctttt cctgtctgtt actgccctca gtggagccca 2820 cagtgaccat ctccccatcc aggacagagg ccctcaacca ccacaacctg ctggtctgct 2880 cagtgacaga tttctatcca gcccagatca aagtccggtg gtttcggaat gaccaggagg 2940 agacaactgg cgttgtgtcc acccccctta ttaggaacgg tgactggacc ttccagatcc 3000 tggtgatgct ggaaatgact ccccagcgtg gagacgtcta cacctgccac gtggagcacc 3060 ccagcctcca gaaccccatc atcgtggagt ggcgtaaggg gatattgagt ttctgttact 3120 atgggcccca caagacaaag ggcagagctc cttctgaccc attccttccc atctcttatc 3180 cctgatgtca ctactgagct ggggatcaca ggagactaga gcacctcttg ctccatggca 3240 agtgcatcag aagaatcctg atctcatcac ctttccagat gctagggaaa ttattctacg 3300 tactgtttct ccagatccca gtcctgatag ctcggaggga cttattatta gggctggtga 3360 ctgggatctt agggtttaag gtatggatga gttcctgagg agtggagatc tgcttccccg 3420 ctctctcacc tactcactgt accgaaggac ctattggctg gctttcccct cccttagggg 3480 tggtctgaat ggaggactag gttcctttga cactttcacc tcctgcatct cagactggac 3540 ttcagctcct cagcagggat gctatggggt gtagggacaa acactgacac tcaggctctg 3600 cttcttaggg gctcagtctg aatctgccca gagcaagatg ctgagtggca ttggaggctt 3660 cgtgctgggg ctgatcttcc tcgggctggg ccttattatc catcacagga gtc 3713 //