Dbfetch
ID MN125352; SV 1; linear; genomic DNA; STD; HUM; 10685 BP. XX AC MN125352; XX DT 29-OCT-2019 (Rel. 142, Created) DT 29-OCT-2019 (Rel. 142, Last updated, Version 1) XX DE Homo sapiens MHC class II antigen (HLA-DPB1) gene, HLA-DPB1*05:01:01:01PN DE allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-10685 RA Cofer L., Geretz A., Thomas R.; RT "HLA alleles from Cebu, Philippines"; RL Unpublished. XX RN [2] RP 1-10685 RA Cofer L., Geretz A., Thomas R.; RT ; RL Submitted (01-JUL-2019) to the INSDC. RL U.S. Military HIV Research Program, Walter Reed Army Institute of Research, RL 503 Robert Grant Ave, Silver Spring, MD 20878, USA XX DR MD5; 44f5f593431b95062a6528b711d9f6dd. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. 2.13 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..10685 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /country="Philippines" FT /db_xref="taxon:9606" FT gene <66..>10202 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*05:01:01:01PN" FT mRNA join(<66..165,4700..4963,8914..9195,9743..9853, FT 10183..>10202) FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*05:01:01:01PN" FT /product="MHC class II antigen" FT CDS join(66..165,4700..4963,8914..9195,9743..9853,10183..10202) FT /codon_start=1 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*05:01:01:01PN" FT /product="MHC class II antigen" FT /protein_id="QFS19560.1" FT /translation="MMVLQVSAAPRTVALTALLMVLLTSVVQGRATPENYLFQGRQECY FT AFNGTQRFLERYIYNREELVRFDSDVGEFRAVTELGRPEAEYWNSQKDILEEKRAVPDR FT MCRHNYELDEAVTLQRRVQPKVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQ FT EETAGVVSTNLIRNGDWTFQILVMLEMTPQQGDVYICQVEHTSLDSPVTVEWKAQSDSA FT RSKTLTGAGGFMLGLIICGVGIFMHRRSKKVQRGSA" XX SQ Sequence 10685 BP; 2858 A; 2372 C; 2851 G; 2604 T; 0 other; ccctttagcg agtccttctt ttcctgactg cagctctttt cattttgcca tccttttcca 60 gctccatgat ggttctgcag gtttctgcgg ccccccggac agtggctctg acggcgttac 120 tgatggtgct gctcacatct gtggtccagg gcagggccac tccaggtaag agccgagctg 180 ccattcttgg agggtctggc tcagggaaca attcctaggg gacgttatct ttaagggatc 240 aaattctgag acaggctgcg ggggctcctg ccctaaggca gtgtcctctc ttcccagcta 300 gagaaagagg ttcatcccct ataggatagc ttgctaccct actggcctat tctctctcca 360 aggacatggg tacagtaaac agagagaggt gcccagtggt cagtatgctt gtctttgggg 420 aaaatgggac caagaggtcc tggataacct tggacagaca aggtttgcag agagagaagt 480 tggcaagtgc aggctcctgg gcgtgttcac gtctgcatcc agcctggagg ggactcaggc 540 agagagccct aagctggagt gtccaggctc tgaggatcac tgaggattca gtgctcacga 600 agaatgcctc ttattcccca gggtggagca ggagcccaca tcccttggac aattaaggag 660 agaagggagg gagggggata ggttttagcc cctgaaggca ttctcattaa aggtacttct 720 cccagcctcc ccagaacttg gttagggtac tagagtgggt tgcgacttgt aggaagaatg 780 agatgaggtt gtgtgggtgc atgacaggga ttgagtgtag gttatcagac agccaaggaa 840 gcagtaacca agtgaaaaat ctcttcttcc tgctgcctcc ctgtggctgg tgtaatatta 900 tggcatctat gatccattgt ttttctctca ggatactctc aggatatttc tttttatata 960 tatatatact ttaagttcta gggtacatgt gcacaacgtg caggtttgtt acatatgtat 1020 acatgtgcca tgttggtgtg ctgcacccat taactcgtca tttacattag gtatatttcc 1080 taatgctatc cctcccccct ccccccaccc cacaacaggc cccggtgtat gatgttcccc 1140 ttcctgtgtc catgtgttct cattgttcag ttcccaccta tgagtgagaa catgtggtct 1200 ttggtttttt gtccttgcaa tagtttgctg tgaatgatgg tttccagctt cctccatgtc 1260 cctacaaagg acatgaactc atcctttttt atggctgcac agtattccat ggtgtatatg 1320 tgtgcatttt cttaatccag tctatcactg atggacagtt gggttggttc caagtctttg 1380 ctattgtgaa tagtgccgca ataaacacat gtgtgcatgt gtctttatag cagcatgatt 1440 tataatcctt tgggtatata cccagtaatg ggatggctgg gtcaaatggt atttctagtt 1500 ctagatcctt gaggaattgc cacaatgtct tgagatacca tctcacacca gttaaaatgg 1560 cgatcattaa aaagtcagga aacaacaggt gctggagagg atgtggagaa ataggaacac 1620 ttttactctg ttggtgggac tgtaaactag ttcaaccatt gtactctcag gacatttcta 1680 gtccaaattt acaccaacac tctgagagga aggactgcaa agtaggtacc ttagttttcc 1740 actgacttcc acctttcctg cttacaccct tcctcctaga cccctccaca cccctcctag 1800 gacacaccta gaaggtactg acatcatgtc acctcctcat ctttcagggt agcaaggttg 1860 gaatctcctg aatacagccc ctcaagccct aaaacctctt atctattacc ttgggttcat 1920 tgtccaggaa ggggaggaga acttgaactt gtagtcacag aagggtgctg agaactaacc 1980 agcaggacgg ctcagccctg ggaactgcag aggggtgagg ctggggagag aggaggctgg 2040 agcagcactg gtgacactga acagtgtcag gaggaggtga cggatgcggc atccccatcc 2100 cataggcaga gctgtcatgt gggatgaggg acagtgttgg gagccaccaa ggaaacccag 2160 aggtggggga gcagagagca gaagggggca tgtgatgctg ggcagtgaaa gggaggacag 2220 gcaaaggctg ggttgaggtt tgtaggggga atgagatgag gcagtggagc catgtgacag 2280 ggactgaggg tagattactg gagctccctg cgtagaatga atgttcaatc aaaacctgct 2340 ggagggagag ctggagccat aggggagtgg gtaaagtggg cagggctgat tccacaattc 2400 cctgcatgct cccccaactc cacacacatc cccaacctca aacagggcac aagaccaaag 2460 ggctgaggag ccaggctata gcttaaagag gctgggggag aaaagcttgg ctgagacaac 2520 ccatagggag ctagaggttt ttaatatatc ctattctgaa taagagacga attcattcag 2580 atcagtggtt tcaaaccgtg ctctgggcaa ctcaattgct aagggttcca caaacaggat 2640 aaagtttctt atatacaaaa aaaatgaagg tttcaaatta caccataaaa cccctcattg 2700 cttatgtcta cttggcaggt aaaattccat ttcaaaagtt aaatgtactt aaaaaattac 2760 ctaagactgg gtaaattaaa aaaattaaat gttgcaaaga aaaaattcaa aattcttatt 2820 cttgaatgaa aaacgttctc ttactggtga ttgaggagga gaaacaaaga ctaacaaatg 2880 aaaatgggag aatccacact cagagtgggg caattgaaca ggcaggggcg gatggatggc 2940 agaggaggag gaatctggac tcaaggagct ggggggctct gggcctggaa ttttagggtc 3000 tggggcccaa ggcaccagga gaagaggcag gtcaggatat ctgagtcaag acctgggatc 3060 ttgccttagc aatgacactg gagactaaag gtggactcca tggtgccctt gagcccagcc 3120 ctaccccatc tccactatcc tctgccacca gctgtgcaac ttctgctagg ggtgaggtta 3180 ataaactgga gaagttaatt tgtggagcat gaaacagatg agcagaacaa tcacagcacc 3240 ttaatttccc cagtgtgccc aagaacagag caggcctgaa gacactcaaa cagaaacaaa 3300 catgtgccgt gtcactgata attctgtgta gacacacacc tgccagacac tgctcatggc 3360 actccctagg aagaacagca tgtgggaaag gctgccaaaa ttgttcatgt aaaaattaca 3420 tcaatgctgt cttcctcggt gctgcctatg cagctggcag ccatctcttc ctccacatca 3480 tggcctccct cagactcctc atgaaggata agatcctcaa aaagaggacc aacaagttca 3540 tgaggcacca atcagactga aatgtcaaaa ttaagcataa ctggcggaaa cccagaggtc 3600 ttaacagtag ggttcgtaga aggtccaagg gccagatctt gatgcccaac attgcttatg 3660 ggagcaacaa caacaacaaa aaacacatgc tgcccagtgg cttccagaag tttctggccc 3720 acagcctcaa ggagctgaaa gtgctgctga tgtgcaacaa atcttactgt gctgagatcg 3780 ctcacaaaat ttcctccaga actgcaaagt catcatggaa agagtcaccc agccggccat 3840 cagagtcacc aaccccagta ccagggtgca cagctaagaa aatgagtaga aagttcatgt 3900 ccacgttttg tgtgtaaata aaaccataaa aactgccaaa aaaattacat caatgcctct 3960 aaacccaaag gactctaccc ccacaggtcc ctggttgttg tggtgatttt cattgtgtaa 4020 aatactttcc acatcttttg acaccaagtc tttctgcagc catgtttgaa aattaacttt 4080 caggctacag agtctttctt ataccaaagt tgaagaaagt tttaagaaat atatttctac 4140 atctcctaca tgcaaaacaa caggagcaag ttgaggaatt ctcaagaaac tggtcgagaa 4200 gagagagcgc ttagctatgg aaaagagaaa gaaggaaggg agggcttcct ggaggaggtg 4260 gcatttgaac caggactgac atcaggatgg aaatgtcagt cagggagtta agtaggggga 4320 ggagctccgc cctccacgtc cccagctcct cccgcccctg ttttttctcc cagtgacccc 4380 acgtgaaacg tctccgcctc ctccagccac cagcagaagg gactgccttc ccctcagtgc 4440 tcgcccctcc ctagtgatca ctcagtgccc ctgagctcat tcttttcagt aaattctctc 4500 tctgcgtggt gagaaaacag gcctggagag gctctgcgac ccgcttagga ccacagaact 4560 cggtactagg aaaactccta ttttaaaatc cagccctggg tgggaagatt tgggaagaat 4620 cgttaatatt gagagagaga gggagaaaga ggattagatg agagtggcgc ctccgctcat 4680 gtccgccccc tccccgcaga gaattacctt ttccagggac ggcaggaatg ctacgcgttt 4740 aatgggacac agcgcttcct ggagagatac atctacaacc gggaggagct cgtgcgcttc 4800 gacagcgacg tgggggagtt ccgggcggtg acggagctgg ggcggcctga ggcggagtac 4860 tggaacagcc agaaggacat cctggaggag aagcgggcag tgccggacag gatgtgcaga 4920 cacaactacg agctggacga ggccgtgacc ctgcagcgcc gaggtgagtg agggctttgg 4980 gccgggggtc ccagggcagc cccgcgggcc cgtgcccagg gcgcaggagc agccgggttg 5040 gcctaaggga ccttagtgcc gggcggaaag gggactttgg gttggggatt catgggggga 5100 gcccatctgg agcttgtcag gggagcgagc gcggggacct ggactgggct gagcatggag 5160 tgaggaggac gggagcagag agaccccggg gacttcatca ggcctggcag ctgactgcat 5220 gtggggtgaa aaaaggaagc cacaggacag cgcacaaggg tatggtgtgg agatggaggt 5280 ggagatggca cagcaggcca cacagagaag aaacctacag ggaggtagct gggtttgagg 5340 tgcttgaggg gcagatgggt ggtctgatgg gcaggtagac agaagggtct gcagccgggg 5400 aggagactga gatacatgag accatccagg gagaggggac ccagggggaa gagcaaagga 5460 ctggatcctg ggaactggac agttgtgatt tggccaagac agaaaagcct gtgaaagaga 5520 ccaaaaaaac ccaagtgcag tgtgaggaga ggcccgcagg gaagagtctt ggaagctgag 5580 gggaggtgac ctcagcagca cagtggacag cggtgccagt gacttgggaa ggtcggaaaa 5640 cagaagatgg aaagtgggtt tggaaaccag ggagacctgg ggagagcagg ttggccgcag 5700 cggcaggagc tggaatggga gggggtgcat gaggctgagt gtggcgcatc ctcctcgggg 5760 ctgagatgga ttttacttgt cttgggttcc ccacggctgt cacagggcag tgtctcagtt 5820 cattcgtctt tttccttcag gaagtctggg tgtaaaggga tggagagagg tgaggtgtgt 5880 gcagtaagag gatttctcaa ggatgggaca ggaaggcctt ggagctttgg cttcctcctg 5940 tgaacttgtg gggtggggag cctggtgcac caacctgagg gacttgaggg agtagtatca 6000 ggatgtggga ttgagccctg gacctttttt ctagaaagag gaaaaaaatg aagggaggag 6060 gaggaggaag ctggggagat cacacctttg attttcttgt tcctggaaag tgaaaggaag 6120 ttcacctgct atgagtgaga aggtggacac actgggtggg gatgaggtga gtgatatgag 6180 cttaggaaag ttgctgaggt aattggttga gagaggtgtt caaataaaag taatgcaatt 6240 ggcaaaaact gttactaaga ctttgtagag gcacaaatca gtgacatggc agcatcttct 6300 ttcacagtaa tcaactgcca gattgcaggg agccctgata ccagcctaag gagtgtgagt 6360 ttctcctcta ggcccacagg tccccaacct cactcctccg aagactctcc tggagatcat 6420 ctgtgatgcg cagataccca gactcactgc cccgagactc agattccctg ggtagggagg 6480 tcgggggatc tctgcttgta atcagctccc tagaggttcc catgtagccg gataagtatt 6540 gtcagaacac tgaagatttt tgaaaaatga aaaagagaag gttggagatg tgtcttcaga 6600 agactactaa gggtgctagg tagaggaggg accagaggca gggagatgag gtaggaaact 6660 gctattattt gtcagggaaa ttgcaatcaa gaaatgagtt agaacaggga aaacacagag 6720 gcaggggaga ggtggaaggg ggaggaaagg agtagtgaca attccagggt gtatgctcac 6780 ccaaatctag aagtaattga gcaaatgttt tctgggcatt agagaaggca actagaacaa 6840 acaggaatcc ttgccttggt gaaatgtatt tgaactgggt cagaaatgag gccattgggt 6900 atcaagcctt aactccagcg ccccctggag gtcgctgatg tggctccagg ctgacctgct 6960 cctgtcaaag aatattgagc aagatgcctc tcatggaatg ttctgggacc ttaaaacaga 7020 tacccaagta ttccccctga tttcatggtt cccagaagct ctatggggaa gaaattgtac 7080 gtaattcaca actgagattt agacataagt tgaatagtgt aatggacgtt gagttaaccg 7140 aggtaatgaa gtagtgagac acaggtgccc ctgaaataaa ctcacattga gggaagaggc 7200 tgacaatgtg gatcagtctg taaacaaggc aaaaatacaa tagggagtaa gggttgtgtg 7260 tcagttcaag actgtacttt tacctggccc agcgccatgt tggggtattt gtgttctcca 7320 ggaagtagaa aggaaagaac tgagtgatta gggacctaga agactaattt gagacattcc 7380 tcttgatgaa ctgttctcta gggtagtcct ctgaaagagc tgttctctag tggatctccc 7440 tgaatgaact gttctctagg agcacttgac ccttttctgt gtttgttttt tgttttgtgt 7500 ttgtgtttgt ttttgagaca ggttctcgct ctgtctccca ggctggagtg ctgtggcgcc 7560 atcatgactc actgcagcct caacctcctg ggctcaagtg atcctcctgc ctcagcctcc 7620 catgtagcta gaactacaga tacatgtacc accatgtctg gctaatttat ttttcttttt 7680 agagatgggt tctcactatg ttgcccaggc tggtctcgaa accctgggct caagtgatcc 7740 tcacgcctca gcctcccaaa gtgctaagat tataggcatg accaccatgc ctggcctttt 7800 ctgccttccg agaaggaaaa aggtactggt ggcagagatc caaaagaaaa gttgccagtg 7860 gcagtgtgga aattgacctg agaacaacag aacaagctgg ggcacaaatg caaagatgca 7920 gagggaggca acatctggtt atctgtgaga ccttcatggg acctgaagac acatcctttt 7980 ggaaaaggat gggatttcta ctactcaagc atgtaggggc tcaggatatt atgtaaatat 8040 gaagattttg agtttttgta agtgaggtaa aaaaaatacc taggttattt acagaataag 8100 acatgtcaag ctctcttcat tttctttgta ttttcatgaa ataaaggtat tagattaaca 8160 ggccaccata atgccattgt ctgtatatct taatttcaag atattatttg agtaattttt 8220 gcatcctttg tatcaagata gaactttgaa aagacaggta atttcacagt tgattaaata 8280 ttctttgccc aaattacttt tggttaaaat ttctcctata tgtgctacag agtgcaaact 8340 ctgtctccct gccattccgc tatatactta ctaattatta ttttattcaa gatcatgcat 8400 gctctacttg aaggtctatc ttttcagtgc tacccttacc cactagccta atcacattat 8460 atctattttc aacatctagg aatcaattac gtagtgaaca tgcctaagaa ataataatct 8520 gggcagatgc agtggctcag gcctgtaatc ccagcacttt gagaggctga gcgggtggat 8580 cacttgaggt caggagttgg tcaagtgctc ctagagaacc agcctgacca acatggagaa 8640 accttgtctc tactgataat acaaaaatta gccaggtgag gtggcaggca cctataatcc 8700 cagctattcg ggaggctgag gaaggagaat tgcttgaacc cctgaggtgg aggttgcagt 8760 gagccaatat tgcgccactg cattccagac ttggcaacag agcgacactc cacctcaaca 8820 aaaagaaaga aagagcgaga ttacgtctca aaaaaggaag gaaggaagga caatctcaaa 8880 tgctatttca ttattttcct tccccactcg tagtccagcc taaggtgaac gtttccccct 8940 ccaagaaggg gcccctgcag caccacaacc tgcttgtctg ccacgtgaca gatttctacc 9000 caggcagcat tcaagtccga tggttcctga atggacagga ggaaacagct ggggtcgtgt 9060 ccaccaacct gatccgtaat ggagactgga ccttccagat cctggtgatg ctggaaatga 9120 ccccccagca gggagacgtc tacatctgcc aagtggagca caccagcctg gacagtcctg 9180 tcaccgtgga gtggagtgag tctctgatga ccgtctagac cccacctctg aagagcaggg 9240 gactctctgg ctctggggtc cactcatctt atcttctgta tctataccct ggggccatgt 9300 ccaaacctca tctttcttct ataccagctc ctgagcatag tttgaagcca gggcaatgga 9360 gacttcctga ccttggctta ggggttcctg aagattcata gttctccccc ttgtcagaga 9420 atctagggac actggctgat ctcgaaaccc tcacacacag gaactgacct cacacatagg 9480 aacagttctc ttctttcagc attttagcct cttctcaggc attttgagag gcaacttcta 9540 gaatcagcat ttgccacctt gttgaggtca cacccctgtt ccggacatga gggtggctct 9600 ttctgaattt cctcttagca agctttttcc cctgcactgt cttcatcccg atattctgca 9660 tcacgctcca gaatctcaga caggacatga gtagggatgc agctggtgga ggtgacacta 9720 aacctgggtc tgtccttccc agaggcacag tctgattctg cccggagtaa gacattgacg 9780 ggagctggag gcttcatgct ggggctcatc atctgtggag tgggcatctt catgcacagg 9840 aggagcaaga aaggtgagaa agcctgcaag gtgagcggga cttaccttcc cctggcatat 9900 tcacacttac tccatgatga gggttcagac agaaaagaaa tgtcagaaag ctctagagac 9960 cactgaaatc agatagtcgg ggaacaaaca tgacctatgg cgagaggggg atcccaggct 10020 gggatcttaa ttcagccaga tgcatgaggt cccaggtgct cagactcctg cggggcatcc 10080 attgagtggt ggtcaatgga atttggtggg atggaaatgt ttctctaact atctgaggtg 10140 gtttcaatgg ctgaatacat aacctttcct ctttcatttc agttcaacga ggatctgcat 10200 aaacaggtaa tattcctgct ttgatttcct tggggggtgg gttacaggag gatatgactc 10260 ttttctgtgc attgtaatac tgaggctcct ccaggaaggg aatctcaggc atgaacccct 10320 ctttcaacct cagctctcgg gtgagtgggg aaaaagcatt gcacggctcc attgctgaag 10380 gaagcagaga tcagttctgt tctttatcag cctaagatgc agcctctcac cataattttt 10440 ctctcctgga cttaaaggaa ggaggccagc aacctgggat aacttgtcct ttacccccac 10500 agggttcctg acctcaccga aaagactaat gtgccttaga acaagcattt gctgtgtttt 10560 gttagcacct ggttccagga cagaccctca gcttcccaag aggatactgc tgccaagaag 10620 ttgctctgaa gtcagtttct atcgttctgc tctttgattc aaagcactgt ttctctcact 10680 gggcc 10685 //