Dbfetch
ID MN114098; SV 1; linear; genomic DNA; STD; HUM; 3318 BP. XX AC MN114098; XX DT 04-JAN-2020 (Rel. 143, Created) DT 04-JAN-2020 (Rel. 143, Last updated, Version 1) XX DE Homo sapiens isolate BY01829 MHC class I antigen (HLA-A) gene, DE HLA-A*30:78Null variant allele, partial sequence. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3318 RA Lazaro A., Hou L., Enriquez E.; RT ; RL Submitted (27-JUN-2019) to the INSDC. RL Oncology, Georgetown University, 11333 Woodglen Dr., Rockville, MD 20852, RL USA XX DR MD5; c0722362e2ab12d974186e40de396dff. XX CC ##Assembly-Data-START## CC Assembly Method :: Assign Tru Sight v. HLA 2.1; GenDex v. CC V2.13.0.12966 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3318 FT /organism="Homo sapiens" FT /chromosome="6" FT /isolate="BY01829" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <117..>3018 FT /gene="HLA-A" FT /allele="HLA-A*30:78Null variant" FT mRNA join(<117..189,320..588,830..1105,1685..1960,2063..2179, FT 2622..2844,3014..>3018) FT /gene="HLA-A" FT /allele="HLA-A*30:78Null variant" FT /product="MHC class I antigen" FT variation 433^434 FT /gene="HLA-A" FT /replace="a" FT /note="introduces premature stop codon" XX SQ Sequence 3318 BP; 638 A; 949 C; 1008 G; 723 T; 0 other; agttctcact cccattgggt gtcgggtttc cagagaagcc aatcagtgtc gtcgcggtcg 60 ctgttctaaa gcccgcacgc acccaccggg actcagattc tccccagacg ccgaggatgg 120 ccgtcatggc gccccgaacc ctcctcctgc tactctcggg ggccctggcc ctgacccaga 180 cctgggcggg tgagtgcggg gtcgggaggg aaaccgcctc tgcggggaga agcaaggggc 240 cctcctggcg ggggcgcagg accgggggag ccgcgccggg aggagggtcg gtcaggtctc 300 agccactgct cgcccccagg ctcccactcc atgaggtatt tctccacatc cgtgtcccgg 360 cccggcagtg gagagccccg cttcatcgca gtgggctacg tggacgacac gcagttcgtg 420 cggttcgaca gcgcgccgcg agccagagga tggagccgcg ggcgccgtgg atagagcagg 480 agaggcctga gtattgggac caggagacac ggaatgtgaa ggcccagtca cagactgacc 540 gagtggacct ggggaccctg cgcggctact acaaccagag cgaggccggt gagtgacccc 600 ggccgggggc gcaggtcacg acccctcatc ccccacggac gggccaggtc gcccacagtc 660 tccgggtccg agatccaccc cgaagccgcg ggaccccgag acccttgacc cgggagaggc 720 ccaggcgcct ttacccggtt tcattttcag tttaggccaa aaattccccc gggttggtcg 780 gggctgggcg gggctcgggg gactgggctg accgcggggt cggggccagg ttctcacacc 840 atccagataa tgtatggctg cgacgtgggg tcggacgggc gcttcctccg cgggtatgaa 900 cagcacgcct acgacggcaa ggattacatc gccctgaacg aggacctgcg ctcttggacc 960 gcggcggaca tggcggctca gatcacccag cgcaagtggg aggcggcccg ttgggcggag 1020 cagttgagag cctacctgga gggcacgtgc gtggagtggc tccgcagata cctggagaac 1080 gggaaggaga cgctgcagcg cacgggtacc aggggccacg gggcgccttc ctgatcgcct 1140 gtagatctcc cgggctggcc tcccacaagg aggggagaca attgggacca acactagaat 1200 atcaccctcc ctctggtcct gagggagagg aatcctcctg ggtttccaga tcctgtacca 1260 gagagtgact ctgaggttcc gccctgctct ctgacacaat taagggataa aatctctgaa 1320 ggagtgacgg gaagacgatc cctcgaatac tgatgagtgg ttccctttga caccggcagc 1380 agccttgggc ccgtgacttt tcctctcagg ccttgttctc tgcttcacac tcaatgtgtg 1440 tgggggtctg agtccagcac ttctgagtcc ctcagcctcc actcaggtca ggaccagaag 1500 tcgctgttcc cttctcaggg aatagaagat tatcccaggt gcctgtgtcc aggctggtgt 1560 ctgggttctg tgctctcttc cccatcccgg gtgtcctgtc cattctcaag atggccacat 1620 gcgtgctggt ggagtgtccc atgacagatg caaaatgcct gaattttctg actcttcccg 1680 tcagaccccc ccaagacaca tatgacccac caccccatct ctgaccatga ggccaccctg 1740 aggtgctggg ccctgggctt ctaccctgcg gagatcacac tgacctggca gcgggatggg 1800 gaggaccaga cccaggacac ggagctcgtg gagaccaggc ctgcagggga tggaaccttc 1860 cagaagtggg cggctgtggt ggtgccttct ggagaggagc agagatacac ctgccatgtg 1920 cagcatgagg gtctgcccaa gcccctcacc ctgagatggg gtaaggaggg agatgggggt 1980 gtcatgtctc ttagggaaag caggagcctc tctggagacc tttagcaggg tcagggcccc 2040 tcaccttccc ctcttttccc agagctgtct tcccagccca ccatccccat cgtgggcatc 2100 attgctggcc tggttctcct tggagctgtg atcactggag ctgtggtcgc tgccgtgatg 2160 tggaggagga agagctcagg tggagaaggg gtgaagggtg gggtctgaga tttcttgtct 2220 cactgagggt tccaagcccc agctagaaat gtgccctgtc tcattactgg gaagcaccat 2280 ccacaatcat gggcctaccc agcctgggcc ctgtgtgcca gcacttactc ttttgtaaag 2340 cacctgttaa aatgaaggac agatttatca ccttgattac ggcggtgatg ggacctgatc 2400 ccagcagtca caagtcacag gggaaggtcc ctgaggacag acctcaggag ggctattggt 2460 ccaggaccca cacctgcttt cttcatgttt cctgatcccg ccctgggtct gcagtcacac 2520 atttctggaa acttctctgg ggtccaagac taggaggttc ctctaggacc ttaaggccct 2580 ggctcctttc tggtatctca caggacattt tcttctcaca gatagaaaag gagggagtta 2640 cactcaggct gcaagtaagt atgaaggagg ctgatgcctg aggtccttgg gatattgtgt 2700 ttgggagccc atgggggagc tcacccaccc cacaattcct cctctagcca catcttctgt 2760 gggatctgac caggttctgt ttttgttcta ccccaggcag tgacagtgcc cagggctctg 2820 atgtgtctct cacagcttgt aaaggtgaga gcttggagga cctaatgtgt gttgggtgtt 2880 gggcggaaca gtggacacag ctgtgctatg gggtttcttt gcattggatg tattgagcat 2940 gcgatgggct gtttaaggtg tgacccctca ctgtgatgga tatgaatttg ttcatgaata 3000 tttttttcta tagtgtgaga cagctgcctt gtgtgggact gagaggcaag agttgttcct 3060 gcccttccct ttgtgacttg aagaaccctg actttgtttc tgcaaaggca cctgcatgtg 3120 tctgtgttcg tgtaggcata atgtgaggag gtggggagac caccccaccc ccatgtccac 3180 catgaccctc ttcccacgct gacctgtgct ccctccccaa tcatctttcc tgttccagag 3240 aggtggggct gaggtgtctc catctctgtc tcaacttcat ggtgcactga gctgtaactt 3300 cttccttccc tattaaaa 3318 //