Dbfetch

Dbfetch

ID   MN082716; SV 1; linear; genomic DNA; STD; HUM; 1065 BP.
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AC   MN082716;
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DT   27-AUG-2019 (Rel. 141, Created)
DT   27-AUG-2019 (Rel. 141, Last updated, Version 1)
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DE   Homo sapiens isolate 20190425DQA1e3 MHC class II antigen (HLA-DQA1) gene,
DE   HLA-DQA1*05:05var allele, complete cds.
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KW   .
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RP   1-1065
RA   Fuerst D., Tsamadou C., Neuchel C., Mytilineos J.;
RT   "HLA-DQA1*05:05var, a novel HLA-DQA1 allele";
RL   Unpublished.
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RN   [2]
RP   1-1065
RA   Fuerst D., Tsamadou C., Neuchel C., Mytilineos J.;
RT   ;
RL   Submitted (19-JUN-2019) to the INSDC.
RL   Transplant Immunology, Institute for Clinical Transfusion Medicine Ulm,
RL   Helmholtzstr.10, Ulm, BW 89077, Germany
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DR   MD5; 4ecaba87eacf5e8483a3be5a4bc8d1e8.
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CC   ##Assembly-Data-START##
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..1065
FT                   /organism="Homo sapiens"
FT                   /isolate="20190425DQA1e3"
FT                   /mol_type="genomic DNA"
FT                   /tissue_type="Blood"
FT                   /db_xref="taxon:9606"
FT   gene            <1..>1065
FT                   /gene="HLA-DQA1"
FT                   /allele="HLA-DQA1*05:05var"
FT   mRNA            join(<1..82,183..428,529..810,911..>1065)
FT                   /gene="HLA-DQA1"
FT                   /allele="HLA-DQA1*05:05var"
FT                   /product="MHC class II antigen"
FT   CDS             join(1..82,183..428,529..810,911..1065)
FT                   /codon_start=1
FT                   /gene="HLA-DQA1"
FT                   /allele="HLA-DQA1*05:05var"
FT                   /product="MHC class II antigen"
FT                   /protein_id="QEG53635.1"
FT                   /translation="MILNKALMLGTLALTTVMSPCGGEDIVADHVASYGVNLYQSYGPS
FT                   GQYTHEFDGDEQFYVDLGRKETVWCLPVLRQFRFDPQFALTNIAVLKHNLNSLIKRSNS
FT                   TAATNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFL
FT                   SKSDHSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCAL
FT                   GLSVGLVGIVVGTVFIIRGLRSVGASRHQGPL"
FT   gap             83..182
FT                   /estimated_length=unknown
FT   gap             429..528
FT                   /estimated_length=unknown
FT   gap             811..910
FT                   /estimated_length=unknown
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SQ   Sequence 1065 BP; 166 A; 206 C; 192 G; 201 T; 300 other;
     atgatcctaa acaaagctct gatgctgggg acccttgccc tgaccaccgt gatgagcccc        60
     tgtggaggtg aagacattgt ggnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       120
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       180
     nnctgaccac gtcgcctctt atggtgtaaa cttgtaccag tcttacggtc cctctggcca       240
     gtacacccat gaatttgatg gagatgagca gttctacgtg gacctgggga ggaaggagac       300
     tgtctggtgt ttgcctgttc tcagacaatt tagatttgac ccgcaatttg cactgacaaa       360
     catcgctgtc ctaaaacata acttgaacag tctgattaaa cgctccaact ctaccgctgc       420
     taccaatgnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       480
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnag gttcctgagg       540
     tcacagtgtt ttccaagtct cccgtgacac tgggtcagcc caacatcctc atctgtcttg       600
     tggacaacat ctttcctcct gtggtcaaca tcacatggct gagcaatggg cactcagtca       660
     cagaaggtgt ttctgagacc agcttcctct ccaagagtga tcattccttc ttcaagatca       720
     gttacctcac cctcctccct tctgctgagg agagttatga ctgcaaggtg gagcattggg       780
     gactggacaa gcctcttctg aaacactggg nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       840
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       900
     nnnnnnnnnn agcctgagat tccagcccct atgtcagagc tcacagagac tgtggtctgc       960
     gccctggggt tgtctgtggg cctcgtgggc attgtggtgg gcactgtctt catcatccga      1020
     ggcctgcgtt cagttggtgc ttccagacac caagggccct tgtga                      1065
//