Dbfetch
ID MN053841; SV 1; linear; genomic DNA; STD; HUM; 9780 BP.
XX
AC MN053841;
XX
DT 29-OCT-2019 (Rel. 142, Created)
DT 29-OCT-2019 (Rel. 142, Last updated, Version 1)
XX
DE Homo sapiens isolate 17213_IMGT MHC class II antigen (HLA-DPA1) gene,
DE HLA-DPA1*02:new allele, complete cds.
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-9780
RA Chou P.-C., Arnold P.Y.;
RT ;
RL Submitted (10-JUN-2019) to the INSDC.
RL Pathology, St. Jude Children's Research Hospital, 262 Danny Thomas Place,
RL Memphis, TN 38105, USA
XX
DR MD5; 2d7f67a9583716013bed2d09b0d689d0.
XX
CC ##Assembly-Data-START##
CC Assembly Method :: Assign TruSight HLA Software v. 2.1
CC Assembly Name :: HL-17-213
CC Coverage :: 229x
CC Sequencing Technology :: Illumina
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1..9780
FT /organism="Homo sapiens"
FT /isolate="17213_IMGT"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT gene <1..9522
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*02:new"
FT mRNA join(<501..623,4180..4425,4766..5047,5262..5428,8732..9522)
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*02:new"
FT /product="MHC class II antigen"
FT exon 501..623
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*02:new"
FT /number=2
FT 5'UTR <501..523
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*02:new"
FT CDS join(524..623,4180..4425,4766..5047,5262..5416)
FT /codon_start=1
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*02:new"
FT /product="MHC class II antigen"
FT /protein_id="QFR42336.1"
FT /translation="MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQ
FT THRPTGEFMFEFDEDEQFYVDLDKKETVWHLEEFGRAFSFEAQGGLANIAILNNNLNTL
FT IQRSNHTQAANDPPEVTVFPKEPVELGQPNTLICHIDRFFPPVLNVTWLCNGEPVTEGV
FT AESLFLPRTDYSFHKFHYLTFVPSAEDVYDCRVEHWGLDQPLLKHWEAQEPIQIPETTE
FT TVLCALGLVLGLVGIIVGTVLIIKSLRSGHDPRAQGPL"
FT exon 4180..4425
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*02:new"
FT /number=3
FT exon 4766..5047
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*02:new"
FT /number=4
FT exon 5262..5428
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*02:new"
FT /number=5
FT variation 5284
FT /gene="HLA-DPA1"
FT /replace="g"
FT /note="results in methionine to isoleucine substitution"
FT 3'UTR join(5417..5428,8732..9522)
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*02:new"
FT exon 8732..9522
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*02:new"
FT /number=6
XX
SQ Sequence 9780 BP; 2687 A; 2142 C; 1875 G; 3076 T; 0 other;
ggtggacctg aaagaaagat taattatata ttttattaga tagcacattc attcttaatt 60
atcagcagaa tatttttgta aaatattgac aacataacat aaaacatgat ttaaaatata 120
gtgaccaaaa aacatcaaag atcatctgac tgtctgggat gggggtgggg ctcgggagaa 180
ggaacataat ggaaaacatt tgccgtcaga agaaggtgta acttatcttt ttacatctct 240
ttctctaact ctgaaaatga actgtgaact ggagctctct tgaccacgct ggtacctaaa 300
attctcccat ctcttcccca gcaccttcca gcgtcctctt tacccagcaa cagagaatgt 360
cagctctatg atttctctga taggtgaatc ccagccatgc tgattcctct ccacccattt 420
ccagtgctag aggcccacag tttcagtctc atctgcctcc actcggcctc agttcctcat 480
cactgttcct gtgctcacag tcatcaatta tagaccccac aacatgcgcc ctgaagacag 540
aatgttccat atcagagctg tgatcttgag agccctctcc ttggctttcc tgctgagtct 600
ccgaggagct ggggccatca agggtgagtg ctcaggagga cgcaagagcg tcggggtgag 660
tgatggggtg gttcacatca attgttgctt caggaatcac agattttagg ggctcattga 720
tctatctggt cctcatagtc tatgttccct ctggccctca taataataac agcaataaca 780
gccagaattt atgagactcc tgcatagttt ctttccccat ttacatctca caggaacctt 840
caatgaagat aatattccat tcatttagaa attattcctt ttatttagaa attattttga 900
aaaaactgaa gctcaaaaag atgaataagt tttccaaggt tacacagcag atcaacgagc 960
caagtttgaa gtccagaccc agctctgagg gtcgtacact gccttcccca gattcctgca 1020
cacagtgacc tactaccagg gccctcctat ctctctggga tccccagcct ctgtcttttg 1080
tggctgcttc acaggaactc cgagctatgg actctgcatt aggagaggaa gtgcgaagag 1140
tgtttctgta tcctctctct cttctaggac cctagggctc ttcctgggtc tttgtgggtg 1200
gtcacaagct ttcctccctc aagacagcag ggttgcatgg tcttgatagc cttgtgattc 1260
gggttctgag agatccagga ctgcaaggga ggcctagact tttgatagct gcaaggactc 1320
agccagagat ggaccgtagt gaatgctcct ttttcctgta gctgaaatca gggagaatga 1380
catcaagcct gttcatgatg ctgtcattcc aaaatctagt gatggggaag gttagaatcc 1440
ataacgtaca agatgcacac tggcttcaga cagttttatt taagatgtgt agaataaaga 1500
ggaggtcagg ctgggtagaa ccagaagtat ctattgccct gttcgcggtc acctgagtta 1560
tttctaatgt tatgttataa taaacaccac aataggcttc tcttcataga tgcaaatact 1620
ttttagtatt cttggtagaa attcctaatg agctcagctg tctcttcagg gcttccctgc 1680
ccagtctctt aacatttaaa catgtcattt accttaaaaa cataagtgca aaccaactga 1740
taaaaaacaa ccttgccttc agtctgcatc ctgtcccaga gacactttct ttgtgtcctc 1800
acacgtggag ctaagcttct gacttgcctc tggtacatcc ctgaggatcc tctcatcttg 1860
gccatcagga acctctacag aaggtcaaat ccagtgggtt cttctcagtg cctctgactt 1920
gagttactaa taacatttgc actgtaatcc acttctttct gatgaactac catgtcctta 1980
tttttctcct gtttacctgg atcctcctta tcatccttta aatcacctct taattatcat 2040
gttctctcat tataccctga gatctcggca attctgattt ttggcactct tcctggaaaa 2100
tctcatttaa cctgcgcctg ccactaatga ctctcagttc tctggcctaa actcctctcc 2160
tgagaccacc catcatacac aaatgtctac gtattatttc tccttagatg actttcagat 2220
cttctaagtg caatagcccc acagtgaact cagtatcttc tcccagtcag gctgtcttcc 2280
ccctgagaga agtggctttt gccctgtttt ctgaatgcct acattgaagc catctgttcc 2340
ccaggaagcc ttccctgatg tgctgtttga tcgcatcttg tgtataccca cgtatctgca 2400
cttatccttc tgaacctgct gttgtcttgt cacttgtgtt tccttctgtg acttatacgc 2460
gtctgcacaa caggacgtat gtattatttt tatttgagta tttagcatct aacagtgttt 2520
gacatatagt agtcttttaa tacatatttt tgtctgaatg gaaatgatat tttgaagtaa 2580
aataatctgt tccatagctg gctgatcttt ggactgcaga acttgtgaaa gtgtttttta 2640
aaaagcattt taaaaagtac aagggacatt catgtaataa gaagatgagt tttcaataac 2700
tgctagagga ctttgtgtct ttttatttta ccctcttttt cctgatgagt cctttgagtc 2760
ctttaaactg aggagcaagc taagtttcct agtgaaatac ctataggatt tgttttgttt 2820
agtttcaaat accactcttt gcttggccac ttactgtgtc agggagtcat tctcagtgaa 2880
aaataagaca tagatcatac cctctagaca cttacaatta cagtgacaag gagtcattct 2940
cctgtcccca catgtcaggg ctgaaaactc acagggaaat ccgtgagttg ggaagtgaga 3000
gcagaagagc tccatagttc cttctcactc tgatgcattt accattctaa acccagactt 3060
tcacatacac attcatcatt ttctttcatg ataatagttg cttttatcct cttatctttg 3120
ctaattctta caaactaata aagactaaga aacaaaataa attaaatcct acaggtgttc 3180
caaactcagc aataatttct agttggcctc taaaacaaaa atcaaaatat aaatgtaaga 3240
aaagttcaga atgcttagta cctgcgtgat gaaataatct gtacactaaa cccccgagtc 3300
atgagtttac ctatacaaca aacctgcaca tgtactcctg aacataaaat aaacgttgaa 3360
atatttttaa aaaggaaaca aaagtttgga acaaatgcca aaataactgt actgtacttt 3420
tgaatttata tgccccaaat gaaaaatatt atcaacaaag ctatacattc tacattttca 3480
tgttcataaa ctaagacaga aactttaaaa ctgtcaagag cactaaaatt tgaaggatat 3540
tttcttcttc ctctcaattt tgtatttttt tctacctttt ctataataag aaaaagaaaa 3600
tgtccactcc cccaacccca cgactctaaa aacaatttta catctgtgtc ctagaagaat 3660
taagaactta atgggataga aaacctctct actagttcca ccagtagcca tatgacctta 3720
gcaagtaatt aatatgtaac ttccctgcat ttccttacct gtaaaatgta tgatatgtat 3780
ttgcttcata aagttattgt gacaattcaa tgagtgaata tgtaaagtat ttagaaggat 3840
gcctggcaca actaagtgct caacaaatgt tagctgtcat tgttattttt actattgtgt 3900
agggtcagga tgcccagact ttcaaagacc aggaagcagc ttgacttatc aatgataaac 3960
tttttatttt gttcttcact cctttctttt tataactgct catctgctct gtattatttc 4020
ctttatggtg ttgctccttc ttcttcccca tatgtccttc ctttgacctc ttactttctt 4080
cctttttata ttcataagtc tttattcatt ctctagcttt gaccacttgc atattcaaac 4140
tgacattttg tcatgttttt ctctactttc tttatgcagc ggaccatgtg tcaacttatg 4200
ccgcgtttgt acagacccat agaccaacag gggagtttat gtttgaattt gatgaagatg 4260
agcagttcta tgtggatctg gataaaaagg agaccgtctg gcatctggag gagtttggcc 4320
gagccttttc ctttgaggct cagggcgggc tggctaacat tgctatattg aacaacaact 4380
tgaatacctt gatccagcgt tccaaccaca ctcaggccgc caatggtact gcctatcttt 4440
gcctcttcct ctgtagccca actggaaggg atgagagggc ctctctgcca ccctcagact 4500
aggaagccta agtgccccct gctgtgtgat cctcttccac tagtggccgt gggctgatcc 4560
caccacagca agggctttca tcctctcttc tcaggagaga gaaaggtgag cagagtgagg 4620
ctggtcagtg gtgtgatacc cctctctgtg attcacagct gccataaaat ctaaggctga 4680
ggtagaggac caccctcccc caagaggtgg agcctttgtg attcatccca gaagagggac 4740
ctaacctggt gctgtctcct cctagatccc cctgaggtga ccgtgtttcc caaggagcct 4800
gtggagctgg gccagcccaa caccctcatc tgccacattg acaggttctt cccaccagtg 4860
ctcaacgtca catggctgtg caatggggag ccagtcactg agggtgtcgc tgagagcctc 4920
ttcctgccca gaacagatta cagcttccac aagttccatt acctgacctt tgtgccctca 4980
gcagaggacg tctatgactg cagggtggag cactggggct tggaccagcc gctcctcaag 5040
cactggggta tgcaactgct tttctctcca taatctcctg gcatcctcta ttccaaagac 5100
ctggtgtcct ctgcaccagc tttccccact ggccaggtct cagtcctctc ctcgtcctaa 5160
catccaatta actggtccat aaccttcaat tcccacaacc atcccaggcc agaaccaccc 5220
tcactacacc tcctgaccct atctcttcat tcttccccca gaggcccaag agccaatcca 5280
gattcctgag acaacggaga ctgtgctctg tgccctgggc ctggtgctgg gcctagtggg 5340
catcatcgtg ggcaccgtcc tcatcataaa gtctctgcgt tctggccatg acccccgggc 5400
ccaggggccc ctgtgaaata ctgtaaaggt gggaatgtaa aaaaggaggt cctagaattt 5460
gtagaatgta aggaagggag gaaaaattca atctgataag tgttcattga tcttctaatg 5520
ggttaaaagc actcagccac ataacaacaa caacattgat aactaactga gtagttaata 5580
tggtcaggcg ctattctgag ggtttacatt cattaactca ctttattctc acaaatagtc 5640
tttgaggtag gtactattat tttcaccatt tcacatgaga gatacttaca tctttttaca 5700
tacacagaga tcttaagcac tttgatccag ttcccacagc tatgaagtag tagggctacc 5760
ttccaatcca gaaagtctgg atccaagact gtttatccac tgtcctattc accctatttt 5820
gtgaaggaaa agaccaagtt gaaattctcc aagagtccgt tgtctaataa cggagccaga 5880
tctatatttc tatacataat tacaacacag tgtggtggga gcctgtaact acttactgtc 5940
tctacttgga ctcattcgat ggcaatgctc acacaaaaaa tgcccctcct gagatcttat 6000
aggtttctat ttatcgtaac actcaccatg ctttatattt ttatatgttt tgggaattct 6060
cttagcatta gacagtgaac ttccatgcag atgaccacat ctaattcatt attattattg 6120
ttattcatgc tggacctcag gtacaaaagg ttaagaactt ctcagttcat tatactgtca 6180
tcactggtgc ctccgaactc tctctctctc tcgatttatt tggtcccttt tatctccagt 6240
ccttactccc atatctaacc tcttacccct acctcatagg taaacatttt aatgaatttg 6300
atgtttcctt ttatttgcat agatgctccc taatatgtag tagtgtccag tgtacatgta 6360
tttttaatta accaaaatgg cattaaatta tagatctaat tttgtatatc cagtttgtat 6420
cttccaaatc ttccatagta ttttcctcta tatgtccatg cattagtcca ttttgcattc 6480
ctataaagga ataaaggaat atctgaagtt acctaattta tgaagaaaag agctttaaat 6540
ggcttacaga tctgcaggct gtccatgaaa catggcacca gcatctgctt ctgttggggg 6600
attctggaag cttttactca tggtggaagg caagtggagc cagtgcatca catggtcata 6660
gagggagaaa gagacataga aagaggtgcc aggctctttt aacaacgagg tttcacgtgc 6720
actaatagag tgagaactca ctcattaccc tggggcgggc accaagccat tcatgaggga 6780
gtctcctcca tgattcaaat acctcccacc aggccccacc tgcaacactg ggtatcaatt 6840
ttcaacatga gatttggaag ggacaaatat ccaaatcata ttaatccaca tatctatatt 6900
gctcctggga tacctggatc acccctggtt ctctactatt gcaagcgatg ctcgtatctc 6960
acatggaact gcatatgcat gtgggcctga cctgcatccc tggaatgtat gtatcctaga 7020
aaggggttgc agggttgctg gagatgcagc tccttaattt gactaaatac tgctcatctt 7080
ctcatcagaa tggctgtact catctgtgct tcctttgtca gtacctgaaa tgtcctgcaa 7140
ctcctaaatg cacatcaaca ctggacatta tccagttttc taacttttgc caatttcatt 7200
tgcataaaga aatatgctgt tttattttgc atttctttaa ttactaataa ttggggctat 7260
aattaggact gattaaccac ttgggggttc cttttctata aattgcctgt tcacattcat 7320
tgcccatttt tgtattatgt gcttctatca ttttcttatt gatttgcaag tgatacttac 7380
acagtcctgc tagtagtccc ttgtcagttt taggcattgc aaatgttttc ccctaatctg 7440
acttctggta actttctcct tggtttcctt tattgaagag aaatccttaa tattttgtgt 7500
tgaagtccat caactgtatt tttgtttatg catctttttt aaaagaaatc ttccctgtac 7560
tgagatatca aagatactct taaaacatct cctacagttt taaatttcac atgtactact 7620
ttaattcatt tgggattcat ctttgtgttt gatggggatc atgttttatt tttctctata 7680
taatgggcca gtgtgttccc acaactacta aatagttcac cttttcccca taagctagtg 7740
gtgtctcctt tgctatactg aaagctccca ttacagatgg gcctgtgtct gagttccatc 7800
ttgttccact gttctgtttg tctcttcttg tgccagtgtc ctagtgtttt gattactatg 7860
acattgtagt gtgtgttagt atccagtagg aaaaattctt ctttattttt ctttgttcac 7920
acacatttat aatgatatct ataatgattt gtaacagaat gaagtgaatg tagaatgtca 7980
gatgttaaga ggaagaatgg aaaggagggc tggaattagg gtgatgtaag ggatgcactt 8040
gacttaggtg caaaatttgg gagatgccaa aagaactcag taataaatca tattttaatg 8100
aaatatcttg aaaaagcaaa attaatgcaa agatacatga ttgacaaaat atcaaaagag 8160
gattattcaa cgaaaatgga gaagaagcag agaggcagaa taattaggag aatatgttgt 8220
cacataagcc aaggaattaa agaattccag gaaggaggaa gtactgctgt cagatgttca 8280
acagaggtca ttttagaaaa tttaccttgg ttttgaaatc ctttcaaaga gcagtttaca 8340
caatgtgaac aagtatcctt ccttcattgc catcattgat atggtttgga tatttgtccc 8400
ttccaattct cattccaggg ttaagcttct tctctgccct cagtaatgtg gcccttcccc 8460
ttgtcaggat attttggaga catgaagcat gtgggatgcc ctcaaagtca gctggggttt 8520
gagggtgaaa ttcaatgact ttagtgaact ccttggctcc tatgtgctgt tcacctggag 8580
gaccagggtt tgtgcaggga tgaccacctt ctccctggga gctgaacagg gcagagaaat 8640
gggaagctcg ggtacaaagg gagtgggaaa gatgggtttg ggcttgcagt actgaaccca 8700
ggaatgacag taactgtgtg tgttgctgca ggtgacaaaa tatctgaaca gaagaggact 8760
taggagagat ctgaactcca gctgccctac aaactccgtc acagcttttc ttctcacttc 8820
atgtgaaaac taccccagtg gctgactgaa ttgctgaccc ttcaagctct gtccttatcc 8880
gttaccttaa agcagtcatt ccttagtaaa gtttccaaca aatagaaatt aatgaataaa 8940
tgttgacact ttgatagcac tgatatggag attatccttt cattgagcct tttatcctct 9000
ggtcttcttt gaaaaacccc tcactgtcac cttcctgaga atactctaag accaataaat 9060
acttcagtat ttcagagctg ggagactctg agtcattctt actggaagtc taggaccagg 9120
tcacatgtga atactatttc ttgaaggtgt ggtttcaacc tctattgcag atgtagttac 9180
taaaggttct gatcccacct gaatggaaag gtctgaggat attgattcag ccctgggttc 9240
ttctctaact acaggatagg gtggggcaga gaaaggatat tggggggaaa ttttacttgg 9300
atgaagattt tcttggatgt agtttgaaga ctgcagtgtt tgaagtctct gagggaagag 9360
atttggtctg tctggatcaa gatttcaggc agattaggat tccattcaca gcccctgagc 9420
ttccttccca aggctggatt gtaattatag caatatttca tggaggattt tttctacatg 9480
ataaactaag agccaagaaa taaaatttta aaaatgccct cattcattgc aatttttacc 9540
agccatagtc actccatgtg ggagaactta aatcatgatt accagagctt ccaaaagttt 9600
gagaatagtg atgattatga agaaaaatat cttatttgag caaggatttt gtttctttat 9660
gggtgttcat tagatattat gatgaaaaaa gcacgaaatg gtaaaaatgc agataaatat 9720
aaaaacatgt tttctaggtt tctttttatt tttaagttaa aaaaggaatt gtttaaagtg 9780
//