Dbfetch
ID MK679604; SV 1; linear; genomic DNA; STD; HUM; 6168 BP. XX AC MK679604; XX DT 22-OCT-2019 (Rel. 142, Created) DT 22-OCT-2019 (Rel. 142, Last updated, Version 1) XX DE Homo sapiens MHC class II antigen (HLA-DRB1) gene, HLA-DRB1*04 allele, DE partial cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-6168 RA Fabreti R.A., Nascimento E., Vale E.M.G., Oliveira C.K.F.; RT "A new HLA-DRB1 allele identified by haplotype-specific sequencing"; RL Unpublished. XX RN [2] RP 1-6168 RA Fabreti R.A., Nascimento E., Vale E.M.G., Oliveira C.K.F.; RT ; RL Submitted (21-MAR-2019) to the INSDC. RL Molecular Biology, Laboratorio IMUNOLAB Imunologia de Transplantes Ltda, RL Av. Bernardo Monteiro, 971 - 11 andar, Belo Horizonte, Minas Gerais RL 30150283, Brasil XX DR MD5; 68bcb4b5038ffdcb262e4a414e679c27. XX CC ##Assembly-Data-START## CC Assembly Method :: TypeStream Visual v. 1.2 CC Sequencing Technology :: IonTorrent CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6168 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /note="genotype: HLA" FT /db_xref="taxon:9606" FT gene <1..>6168 FT /gene="HLA-DRB1" FT /allele="HLA-DRB1*04" FT mRNA join(<222..491,3956..4237,4935..5045,5518..>5541) FT /gene="HLA-DRB1" FT /allele="HLA-DRB1*04" FT /product="MHC class II antigen" FT CDS join(<222..491,3956..4237,4935..5045,5518..>5541) FT /codon_start=3 FT /gene="HLA-DRB1" FT /allele="HLA-DRB1*04" FT /product="MHC class II antigen" FT /protein_id="QFP98557.1" FT /translation="RFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAV FT TELGRPDAEYWNSQKDLLEQRRAEVDTYCRHNYGVVESFTVQRRVYPEVTVYPAKTQPL FT QHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSG FT EVYTCQVEHPSLTSPLTVEWRAWSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGH FT SGLQPT" XX SQ Sequence 6168 BP; 1524 A; 1273 C; 1458 G; 1913 T; 0 other; gctcctgcct ggaggtctcc agaacaggct ggaggcaggg agggggtccc aaaagccttg 60 ggatcagagg tagtttttcc acctggtccc ccagaccccc gtccgcctca gaaagacaga 120 ggatgagccc ctgggctgcg tgttgtcggg gttgcgggtg gggccagata gtgtcttccc 180 cggaggccgc ttctgtaacc ggatcgttct tgtcccccca gcacgtttct tggagcaggt 240 taaacatgag tgtcatttct tcaacgggac ggagcgggtg cggttcctgg acagatactt 300 ctatcaccaa gaggagtacg tgcgcttcga cagcgacgtg ggggagtacc gggcggtgac 360 ggagctgggg cggcctgatg ccgagtactg gaacagccag aaggacctcc tggagcagag 420 gcgggccgag gtggacacct actgcagaca caactacggg gttgtggaga gcttcacagt 480 gcagcggcga ggtgagcgcg gcgcggggcg gggcctgagt ccctgtgagc ggagaatctg 540 agtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgagagagag 600 agagagagag agagagagag agagagcgcc atctgtgagc atttagaatc ctctctatcc 660 tgagcaagga gttctgcggg cacaggtgtg tgtgtagagt gtggatttgt ccgtgtctgt 720 gaggctgttg tgggagggga ggcaggaggg ggctgcttct tattcttgga gacttctgtg 780 gggaggtgac aagggaggtg ggtgctgggg gctggagaga gaggcgacct tgattgtctc 840 gggtccttag agatgcaagg aagggaaatg tatggggtgt gtggttgggg tgaaggttta 900 ggggaggaga gctgaggggt aaggaaggtt tgggataatg tgaagaggcc agtttcagac 960 tgtccctggc acacaccctt catgtaatct ctgaaataaa agtgtgtgct gtttatttgt 1020 aaaagcatta gattaacttc taggggaatt gagtagacct ctgaggcacc tctgaagctt 1080 ctttaggtat aaatttcttg ctagtttttt gttttcttag tgttatattt ttacatagtt 1140 gaaatgactg tgaaactaac tttttgaatt aaagtttgag aacactgtta ctattttatt 1200 ataatgctaa taatttcata gttacttttt aaatatataa tagttgtgac acaaattacc 1260 tcactttctt tgtttttttt tttcttacac tttaagtttt agggtacatg tgcacaacgt 1320 gcaggtttgt tacatatgta tacatgtgcc atgttggtgt gctgcaccca ttaactcgtc 1380 atttaacatt aggtatatct cctaatgcta tccctcccca cccccccacc ccacaacagg 1440 ccccagtgtg tgatgttccc cttcctgtgt ccatgtgttc tcactgttca attcccacct 1500 atgagtgaga acatgcggtg ttcggttttt tgtccttgcc atagtttgct gagaatgatg 1560 gtttccagct tcatccatgt ccctacaaag gacatgaact cattcttttt tgtggctgca 1620 tagtattcca tagtgtatat gtgccacatt ttcttaatcc agtctatcat tgttggacat 1680 ttgggttggt tccaagtctt tgctattgtg aatagtgccg caataaacat acatgtgcat 1740 atgtctttat agcagcatga tttataatcc ttgggttata tacccagtaa tgggatggct 1800 gggtcaaatg gtatttctag ttctagatcc ctgaggaatc gccacactga cttccacaat 1860 ggttgaacta gtttagagtc ccaccaacag ggtaaaagtg ttcctatttc tccacatcct 1920 ctccagcacc tgttgcttcc tgacttttta atgatcgcca ttctaactgg tgtgagatgg 1980 tatctcattg tggttttgat ttgcaattct ctgatggcca gtgatgatga gcattttttc 2040 atgtgtcttt tggctgcata aatgtcttct tttgagaagt gtctgttcat gtcctttgcc 2100 cactttttga tggggtattt tgtttttttc ttgtaaattt gtttgagttc attgcagatt 2160 ctggatatta gccctttgtc atatgagtag attgcaaaaa ttttctccca ttctgtaggt 2220 tgcctcttca ctctgatggt agtttctttt gctgtgcaga agctctttag tttaattaga 2280 tcccatttgt ccattttggc ttttgttgcc attgcttttg gtgttttaga catgaagttc 2340 ttgcccatgc ctatgtcctg aatggtattg cctaggtttt cttctagggt ttttatggtt 2400 tcaggtctaa catttaagtc tttaatccat cttgaattaa tttttgtata agcaaattac 2460 gtcactttcc ccattgatga cctttattat gacattcacc aatagttgaa aatgtatgtt 2520 tctggttaat ttttgattta tatttttttg atttgtaatt attttgaatt attttgacct 2580 atttattggc cagttgtaat tactgctctg ctctacgaat tacctgttgt atttggtagg 2640 taatggacaa tgatctattg tctcttatct ttagggctta gtatttttct cagtgacttt 2700 gtgggtttgt tgtactgtaa gattattaac actttattga tatttgattc agtattttct 2760 ccagtttgtg gtatgtatat tttgaaaatt cttttccatg ttaagaattt gaacattttt 2820 atttaataaa atatattgca aaatgttaat taatgattca caaactagct caagtctacc 2880 attttgtggt attgatgtct ccaggtttct ccttccttct taaaaaaaaa tgtatttatt 2940 gagagtatgc tagtgtcagg gatttcccta ggcataagca ctccaagtaa tgagtcccag 3000 acactgcctt gatccaaatg tcattctgga aagaaaaatc attttacagt gataagccta 3060 ataatagtta tacttgtttt gcctgggaga tgcattgatc agctaaatgt aaatataaga 3120 actttcaaaa ctaaaatgac gttccttaat ctttctctct gctttaggaa tcatgctttc 3180 ttaggaactt aaagatttgg agaatcattt ctgtctgtcc caccttccca ggagcataac 3240 catttctgtg gtgttctaag gtgtgagtgc atggcagtag tattcctaaa aatccatatt 3300 cagtttcctc atgtgcccta ctccgtccct ttctctatcc acattgcttt aaatcatatt 3360 tttctctcaa ggtgtacaag gatgataaat aggtgccaag tggagaaccc aagtgtgacg 3420 agccctctca cagtagaatg gagtgagaag ctttctgacc tcataaattg aaggctatcg 3480 taattcattc ttttatatat tttacttgca ttaatcctca tataacctca agaggtaaat 3540 taatataatt atcctccatt attggagaga aagttgagac acaaaagaat caaaaactct 3600 tccaggatca accagtaaaa ggcagacctt ggatttgaac caggcaacct ggctcagaag 3660 tcagttttaa ttaccacact ctgtactttc aaagatttgt aaacgctttg acaatgcatg 3720 tcaatttcaa gctatgaaga gccaaacata atttttcaca atatctctca aatctaatgg 3780 gtccccacta taaagattaa attccaggct gatgacactg tgaggccaca tggccagctg 3840 tgctggaggc ctgctcaagg ccagagccta ggtttacaga gaagcagaca aaaagctaaa 3900 caaggagact tactctgtct gcatgactta ttccctctac cttgttttct cctagtctat 3960 cctgaggtga ctgtgtatcc tgcaaagacc cagcccctgc agcaccacaa cctcctggtc 4020 tgctctgtga atggtttcta tccaggcagc attgaagtca ggtggttccg gaacggccag 4080 gaagagaaga ctggggtggt gtccacaggc ctgatccaga atggagactg gaccttccag 4140 accctggtga tgctggaaac agttcctcgg agtggagagg tttacacctg ccaagtggag 4200 cacccaagcc tgacgagccc tctcacagtg gaatggagtg agcagctttc tgacttcata 4260 aatttctcac ccaccaagac gcgaacttta ctaatccctg agtatcaggc ttctcctatc 4320 ccacatccta ttttcatttg ctccacgttc tcatctccat cagcacaggt cactgggggg 4380 tagccctgta atactttcta gaaacacctg taccccctgg ggaagcagtc atgcctgcca 4440 ggcaggagag gctgtccctc ttttgaacct ccccatgatg tcacaagtcg gggtcacctg 4500 ctgtctgtgg gctccaggcc ctgcctctgg gtctgagact gagtttctgg tactgttgct 4560 ctgagtcgtt tgttgtaatc tgagaagagg agaagtatag ggaccttcct gacatgaggg 4620 gagtccaatc tcagctccgc cttttattag atctgtcact ctaggcaact acttaacctc 4680 attgggtctc aggctttctg ttcatcagat gttgaagtcc tgtcttacat caaggctgta 4740 atatttgaat gagtttgatg actgaacctt gtaactgttc agtgtgattt gaaaaccttt 4800 ctcaagaaat ggtcagttat tttagttctt gcagagcagc cttctttctc attttcaaag 4860 ctctgaatct caaggtgtca attaaagagg ttccatttgg gataaaaatc actaaacctg 4920 gcttcctctc tcaggagcat ggtctgaatc tgcacagagc aagatgctga gtggagtcgg 4980 gggcttcgtg ctgggcctgc tcttccttgg ggccgggctg ttcatctact tcaggaatca 5040 gaaaggtgag gagcctttgg tagctggctg tctccatacg cttttctgga ggaggaacta 5100 tggctttgct gaagttggtt ctcagcatat gaatggccct ggataaagcc tctctactcc 5160 caaatgacct ccaatgttct gcaaatccag aaatcatcag tgcatggttg ctatgtcaaa 5220 gcataatagc ttgtggccta cagagataac agaaagatta acaggtatag gtgctttggt 5280 tgagatcgtg gagcaaatta aggaagagca actaaagcta atacaattac actggatcct 5340 gtgacagaca cttcacactt catgggtcac atggtctgtt tctgctcctc tctgccctgg 5400 ctggtgtggg ttgtggtgtc agagaactct caggtgggag atctggagct gggacattgt 5460 gttggaggac agatttgctt ccatatcctt taagtgtata tcttctcttt ttcctaggac 5520 actctggact tcagccaaca ggtaatacct tttcatcctc tttaagaaac agatttggag 5580 gccaggcgca gtggctcacg cctgtaatcc cagcactttg ggaggccgag gcgggcgaat 5640 catgaggtca ggagttcgag accagcctga ccaacgtggt gaaaccccgt ctctactaaa 5700 aatacaaaaa aaaatcagtc gggcgtggtg gtgtgcgcct gtaatcccag ctactcagga 5760 ggccaaggca ggagaatcgc tggaacccgg gaggcagagg ttgcagtgag ccgagattgg 5820 gccactgcac tccagcctag gtgacagagt gagaccccat ctcaaaaaaa caaaaaaaag 5880 aaagaaagaa acagatttcc tttccctaga atgatggtag aggtaataag gcatgagaca 5940 gaagtaatag caaagacatt ggatccaaat ttctgatcag gcaatttaca ccagaactcc 6000 tcctctccac ttagaaaagg cctgtgctct gcaggagtat tgactcatgg agacttcaga 6060 acttgttttt cttcttcctg cagtgctctc atctgagtcc ttgaaagagg gcaaaataaa 6120 ctgttagtag agccaggtct gaaaacaaca ctttcttgcg tctctgca 6168 //