Dbfetch
ID MK679603; SV 1; linear; genomic DNA; STD; HUM; 4947 BP.
XX
AC MK679603;
XX
DT 22-OCT-2019 (Rel. 142, Created)
DT 22-OCT-2019 (Rel. 142, Last updated, Version 1)
XX
DE Homo sapiens MHC class II antigen (HLA-DQB1) gene, HLA-DQB1*06 allele,
DE partial cds.
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-4947
RA Fabreti R.A., Nascimento E., Vale E.M.G., Oliveira C.K.F.;
RT "A new HLA-DQB1 allele identified by haplotype-specific sequencing";
RL Unpublished.
XX
RN [2]
RP 1-4947
RA Fabreti R.A., Nascimento E., Vale E.M.G., Oliveira C.K.F.;
RT ;
RL Submitted (20-MAR-2019) to the INSDC.
RL Molecular Biology, Laboratorio IMUNOLAB Imunologia de Transplantes Ltda,
RL Av. Bernardo Monteiro, 971 - 11 andar, Belo Horizonte, Minas Gerais
RL 30150283, Brasil
XX
DR MD5; 7dabb4bcc6331062e2a635bd293da82e.
XX
CC ##Assembly-Data-START##
CC Assembly Method :: TypeStream Visual v. 1.2
CC Sequencing Technology :: IonTorrent
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1..4947
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /note="genotype: HLA"
FT /db_xref="taxon:9606"
FT gene <1..>4947
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*06"
FT mRNA join(<89..358,2910..3191,3701..3811,4276..>4299)
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*06"
FT /product="MHC class II antigen"
FT CDS join(<89..358,2910..3191,3701..3811,4276..>4299)
FT /codon_start=3
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*06"
FT /product="MHC class II antigen"
FT /protein_id="QFP98556.1"
FT /translation="DFVYQFKGMCYFTNGTERVRLVTRHIYNREEYARFDSDVGVYRAV
FT TPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQRRVEPTVTISPSRTEAL
FT NHYNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRG
FT DVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSQKGP
FT QGPPPA"
XX
SQ Sequence 4947 BP; 1254 A; 1141 C; 1181 G; 1371 T; 0 other;
cggttccaca gctccaggcc gggtcagggc ggcggctgcg ggggcggccg ggctggggcc 60
tgactgaccg gccggtgatt ccccgcagag gatttcgtgt accagtttaa gggcatgtgc 120
tacttcacca acgggacgga gcgcgtgcgt cttgtaacca gacacatcta taaccgagag 180
gagtacgcgc gcttcgacag cgacgtgggg gtgtaccgcg cggtgacgcc gcaggggcgg 240
cctgatgccg agtactggaa cagccagaag gaagtcctgg aggggacccg ggcggagttg 300
gacacggtgt gcagacacaa ctacgaggtg gcgttccgcg ggatcttgca gaggagaggt 360
gagcgtcgtc gcccctccgt gaggcccacc cttggccgag accccgagtt tctgtgccgg 420
gaggggcgat gggggcgagg tctctgaaat ctgagcccag ttcattccac cccaggggaa 480
aggaggcggc ggcggggtgg tgggggcagg tgcatcggag gggcggggac ctagggcaga 540
gcagggggac aagcagagtt ggccaggctg cctagtgtcc cccccagcct ccccgtccgt 600
cggcctcgtc ctccgctctg cacgtttctc gcctcgtgcc ttatgtgttt gcctcctcgt 660
accttacctt cgctaagcag ttctctctgc ccccagtgcc caccctcttc ccctgcccgc 720
cggcctcgct agcactgccc cacccagcaa ggcccacgtg cgcagcttgc gccgcaggaa 780
gcttcaggct tggcctggtg gagttagggc tgccccacag ctgcgcgcag ggcatccagc 840
aattacagtt gcgaaataag atattttgac tttttggctt caaatcatta ttcatcgtaa 900
ttctgttttc ttaaatggct accactaatg gcggagatct ttgaggcgag agactgttta 960
attattgcat gcctggtacc tgacacattg actggtatgt ggtgtgagct caatgatctt 1020
ctgttaaatt catgaataaa tgtactcagc tgccaatcca gttaggttca agaaaaaaac 1080
agaggcttac aaatgaactt tatcaattat tttctaacat tttgcttaat gctttcaagt 1140
aaactcttac tgacttggat cttaatagaa tttgtgaata caaagtctga ggaaaatgtg 1200
tttgctaaaa ataaaaacaa tgcttgaatg atgttgtaag gcagagtttt aatttcttag 1260
aaaagctgaa caaatagcac tatgcaaaga tcagaagttt gggaataaat aggttgaagc 1320
tattaaatta ttggataaaa atagtttcag gttgcttttg gcctaggtta tcccctcccc 1380
cccatcacta tccacttcag gaataaacat tctgaaagtc aattttaccc attcaggaag 1440
cacttatttc tagacagttg ccttatcaaa taccatctat gttatgtcat ttaatctcac 1500
agctacctgt gcattagaga ttagcatcac cactttatat atcctaatat tggtacatga 1560
taaacacttt aagtaatcag cccacaatta ctcaccaaga tcttaagcct cccaaagtac 1620
acaacattct tatgttcctc actacacata tgtagagtct aagggatgta aggccttgtt 1680
aaagccagtt ttgaccagaa gcagcaatga gtctattcct gtttgttctg tgtgttaatg 1740
cggcattgaa aattcatgat taatcaatcc ctagtctgac cccggtgtta tctatgcagg 1800
ttcacaaaac ttttagtttg ctttacactc ccttgccttc ttttgactca catcctaatg 1860
ccagcaagta cttatatttt tgctatttca gttttatttc cataaaattt attttatcat 1920
cttttctcat aaatttgtgc cctctatttt tactcccagt ctgttgaaga tgaacaaatc 1980
ttataaggcc acatagctga ctctgatttc agttggcctc caggaaggag aacctaaaga 2040
aaagttcaag tccaagcaga aaccatgatt ccttccggat gatggctcaa gagtgccatt 2100
taattggggt gccacctgct gacctcagca aatcccagtt atatgtatat gttcacatta 2160
caggctcatt agcccaggcc gacctctgca cggatctcag aatattttct gtggagaaca 2220
tacacgataa tgtctgattt cagaacaaga aagtaattgt caatagcaag gaaatggagt 2280
agggtagaca gctagtaatt aaactcactt gtgcgttaaa aagaaattaa ggaaaaaaag 2340
aaaatgagag aacatattac taaataaaga aagcacacat taaatatttg ctatagtttc 2400
acactaagag aataaaggaa atgtgataaa gtggcctaaa aggtaaagga tgagatgtgt 2460
aaaagaggcg gggaaagatg tgtcattttt ttttactatg agcagcaatc tgagaagata 2520
aaggaattga gttgtggaca aacatgatgt ttgatcaagg gttatttgtt ttgaaggcct 2580
gcctactttt ttttcaaata ttacaaactt ttgaaataac attctacttt tttttcaaat 2640
attacaaact tttgaaataa cattcttttt gttttttgct gtctgttact agattgcaca 2700
ttctataaat gcagggacca tagtatgtta tttatctttg aattctcagt gattgtcaaa 2760
tttatatttg ttgaatgaac cttaatccaa gacttcgact ccaggtatct ttccactctg 2820
gtccaaggag ggatccttcc tcatggtaga cgtggtgtgt gttctcacat ctcactccta 2880
tgtcttttcc tgtctgttac tgccctcagt ggagcccaca gtgaccatct ccccatccag 2940
gacagaggcc ctcaaccact acaacctgct ggtctgctcg gtgacagatt tctatccagg 3000
ccagatcaaa gtccggtggt ttcggaatga tcaggaggag acagccggcg ttgtgtccac 3060
cccccttatt aggaatggtg actggacttt ccagatcctg gtgatgctgg aaatgactcc 3120
ccagcgtgga gatgtctaca cctgccacgt ggagcacccc agcctccaga gccccatcac 3180
cgtggagtgg cgtaagggga tattgagttt ctgttactat gggcccacaa gacaaagagc 3240
tccttctgac ccattccttc ccatctctta tccctgatgt cactactgag ctgggaatca 3300
caggagacta gagcacctct tgctccatgg caagtgcatc agaagaatcc tggtctcatc 3360
acctttccag atgctaggga aattactcta catactgttg ctctgaatcc cagtcctgat 3420
agctctgagg gactgattct tagggctggt gactgggatc ttagggtcta aggttatgga 3480
tgagttcttg aagagcagag atttgcttcc ccactctctc acctattcac tgtatccaag 3540
gacctattgg ctggtctttc ccctccttag gggtggtctg aatggagaac taggttcctt 3600
tgatgccttc accttctgca cctcagactg gacttcaact cctcagcagg gatgctatgg 3660
ggtgtgggga caaacacaga cactcagttc tgctctttag gggctcagtc tgaatctgcc 3720
cagagcaaga tgctgagtgg cgttggaggc ttcgtgctgg ggctgatctt ccttgggctg 3780
ggccttatca tccgtcaaag gagtcagaaa ggtgaggaac cccaggggaa aaggggaaga 3840
tgggctgtga cccagaccct ctgttcagag tggtcctgtc tgtagattag ctctttcctc 3900
ctgaccctga gaagaagtgc gaggagacag gacaagatgg gaggaggcat tggaatctga 3960
ttttactggt tgaaaggtag cgctgtcaca gagctgactg atagagctta ttccagggca 4020
tccttaccat tcatcattgt ctcactggct cctttccaaa agcttcctcc attaagaggg 4080
tcagagcctc agcttccttt ctttctagtg acaatttcct ttgttttagg ggattttaaa 4140
ttagggtgct gaaggcctgg aagaacatgg gtgggaagag aatgtaactc taagtcatgt 4200
gtgtcatttt cctttggggt gagagagtgg ctgtttgtgt aatgagacct ttctctgcat 4260
aacttccttt tgtaagacct caagggcctc caccagcagg taatatttca gccatgatcc 4320
agtgtgggga ggcacaggta taagagggaa gagcatgagc tgagtgtacc tgaccacagt 4380
ggtccatgtt catggcctat ttgctgctat gaggatcaag acttagggga gaagtttgcc 4440
agtttctagg aatctccaga cattgttccc cagaaccaag ccttaacttt ggtggcatct 4500
tcttgtgaaa tgtggagcca gaaccacagc ttaaatgtta gacactagga tgatgcccac 4560
tttgtgccac atgatggtgg ctactgcctg taagcatttt ccagtgactg aaagaggctg 4620
ctagtggtcg ggaagagata tcatccaatt tcctaaaaag actgaaccct tcatattccc 4680
cagaagaata acagctgttc cccacctccc acacatctgc atcaagctga agttctgtgt 4740
cctcatgagc tgatttcacc tttgcacaga tcttggggga ggtgatgaca atacaccctg 4800
gacctcaact ttctctgtct gaagctgcag ggggcccctg aagggtgggg gagatggcag 4860
gcccaccagg ataccctgtg ctgatcaatg ctcttctctc ttctccaggg cttctgcact 4920
gactcctgag actattttaa ctaggat 4947
//