Dbfetch

ID   MK679603; SV 1; linear; genomic DNA; STD; HUM; 4947 BP.
XX
AC   MK679603;
XX
DT   22-OCT-2019 (Rel. 142, Created)
DT   22-OCT-2019 (Rel. 142, Last updated, Version 1)
XX
DE   Homo sapiens MHC class II antigen (HLA-DQB1) gene, HLA-DQB1*06 allele,
DE   partial cds.
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-4947
RA   Fabreti R.A., Nascimento E., Vale E.M.G., Oliveira C.K.F.;
RT   "A new HLA-DQB1 allele identified by haplotype-specific sequencing";
RL   Unpublished.
XX
RN   [2]
RP   1-4947
RA   Fabreti R.A., Nascimento E., Vale E.M.G., Oliveira C.K.F.;
RT   ;
RL   Submitted (20-MAR-2019) to the INSDC.
RL   Molecular Biology, Laboratorio IMUNOLAB Imunologia de Transplantes Ltda,
RL   Av. Bernardo Monteiro, 971 - 11 andar, Belo Horizonte, Minas Gerais
RL   30150283, Brasil
XX
DR   MD5; 7dabb4bcc6331062e2a635bd293da82e.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: TypeStream Visual v. 1.2
CC   Sequencing Technology :: IonTorrent
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..4947
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /note="genotype: HLA"
FT                   /db_xref="taxon:9606"
FT   gene            <1..>4947
FT                   /gene="HLA-DQB1"
FT                   /allele="HLA-DQB1*06"
FT   mRNA            join(<89..358,2910..3191,3701..3811,4276..>4299)
FT                   /gene="HLA-DQB1"
FT                   /allele="HLA-DQB1*06"
FT                   /product="MHC class II antigen"
FT   CDS             join(<89..358,2910..3191,3701..3811,4276..>4299)
FT                   /codon_start=3
FT                   /gene="HLA-DQB1"
FT                   /allele="HLA-DQB1*06"
FT                   /product="MHC class II antigen"
FT                   /protein_id="QFP98556.1"
FT                   /translation="DFVYQFKGMCYFTNGTERVRLVTRHIYNREEYARFDSDVGVYRAV
FT                   TPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQRRVEPTVTISPSRTEAL
FT                   NHYNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRG
FT                   DVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSQKGP
FT                   QGPPPA"
XX
SQ   Sequence 4947 BP; 1254 A; 1141 C; 1181 G; 1371 T; 0 other;
     cggttccaca gctccaggcc gggtcagggc ggcggctgcg ggggcggccg ggctggggcc        60
     tgactgaccg gccggtgatt ccccgcagag gatttcgtgt accagtttaa gggcatgtgc       120
     tacttcacca acgggacgga gcgcgtgcgt cttgtaacca gacacatcta taaccgagag       180
     gagtacgcgc gcttcgacag cgacgtgggg gtgtaccgcg cggtgacgcc gcaggggcgg       240
     cctgatgccg agtactggaa cagccagaag gaagtcctgg aggggacccg ggcggagttg       300
     gacacggtgt gcagacacaa ctacgaggtg gcgttccgcg ggatcttgca gaggagaggt       360
     gagcgtcgtc gcccctccgt gaggcccacc cttggccgag accccgagtt tctgtgccgg       420
     gaggggcgat gggggcgagg tctctgaaat ctgagcccag ttcattccac cccaggggaa       480
     aggaggcggc ggcggggtgg tgggggcagg tgcatcggag gggcggggac ctagggcaga       540
     gcagggggac aagcagagtt ggccaggctg cctagtgtcc cccccagcct ccccgtccgt       600
     cggcctcgtc ctccgctctg cacgtttctc gcctcgtgcc ttatgtgttt gcctcctcgt       660
     accttacctt cgctaagcag ttctctctgc ccccagtgcc caccctcttc ccctgcccgc       720
     cggcctcgct agcactgccc cacccagcaa ggcccacgtg cgcagcttgc gccgcaggaa       780
     gcttcaggct tggcctggtg gagttagggc tgccccacag ctgcgcgcag ggcatccagc       840
     aattacagtt gcgaaataag atattttgac tttttggctt caaatcatta ttcatcgtaa       900
     ttctgttttc ttaaatggct accactaatg gcggagatct ttgaggcgag agactgttta       960
     attattgcat gcctggtacc tgacacattg actggtatgt ggtgtgagct caatgatctt      1020
     ctgttaaatt catgaataaa tgtactcagc tgccaatcca gttaggttca agaaaaaaac      1080
     agaggcttac aaatgaactt tatcaattat tttctaacat tttgcttaat gctttcaagt      1140
     aaactcttac tgacttggat cttaatagaa tttgtgaata caaagtctga ggaaaatgtg      1200
     tttgctaaaa ataaaaacaa tgcttgaatg atgttgtaag gcagagtttt aatttcttag      1260
     aaaagctgaa caaatagcac tatgcaaaga tcagaagttt gggaataaat aggttgaagc      1320
     tattaaatta ttggataaaa atagtttcag gttgcttttg gcctaggtta tcccctcccc      1380
     cccatcacta tccacttcag gaataaacat tctgaaagtc aattttaccc attcaggaag      1440
     cacttatttc tagacagttg ccttatcaaa taccatctat gttatgtcat ttaatctcac      1500
     agctacctgt gcattagaga ttagcatcac cactttatat atcctaatat tggtacatga      1560
     taaacacttt aagtaatcag cccacaatta ctcaccaaga tcttaagcct cccaaagtac      1620
     acaacattct tatgttcctc actacacata tgtagagtct aagggatgta aggccttgtt      1680
     aaagccagtt ttgaccagaa gcagcaatga gtctattcct gtttgttctg tgtgttaatg      1740
     cggcattgaa aattcatgat taatcaatcc ctagtctgac cccggtgtta tctatgcagg      1800
     ttcacaaaac ttttagtttg ctttacactc ccttgccttc ttttgactca catcctaatg      1860
     ccagcaagta cttatatttt tgctatttca gttttatttc cataaaattt attttatcat      1920
     cttttctcat aaatttgtgc cctctatttt tactcccagt ctgttgaaga tgaacaaatc      1980
     ttataaggcc acatagctga ctctgatttc agttggcctc caggaaggag aacctaaaga      2040
     aaagttcaag tccaagcaga aaccatgatt ccttccggat gatggctcaa gagtgccatt      2100
     taattggggt gccacctgct gacctcagca aatcccagtt atatgtatat gttcacatta      2160
     caggctcatt agcccaggcc gacctctgca cggatctcag aatattttct gtggagaaca      2220
     tacacgataa tgtctgattt cagaacaaga aagtaattgt caatagcaag gaaatggagt      2280
     agggtagaca gctagtaatt aaactcactt gtgcgttaaa aagaaattaa ggaaaaaaag      2340
     aaaatgagag aacatattac taaataaaga aagcacacat taaatatttg ctatagtttc      2400
     acactaagag aataaaggaa atgtgataaa gtggcctaaa aggtaaagga tgagatgtgt      2460
     aaaagaggcg gggaaagatg tgtcattttt ttttactatg agcagcaatc tgagaagata      2520
     aaggaattga gttgtggaca aacatgatgt ttgatcaagg gttatttgtt ttgaaggcct      2580
     gcctactttt ttttcaaata ttacaaactt ttgaaataac attctacttt tttttcaaat      2640
     attacaaact tttgaaataa cattcttttt gttttttgct gtctgttact agattgcaca      2700
     ttctataaat gcagggacca tagtatgtta tttatctttg aattctcagt gattgtcaaa      2760
     tttatatttg ttgaatgaac cttaatccaa gacttcgact ccaggtatct ttccactctg      2820
     gtccaaggag ggatccttcc tcatggtaga cgtggtgtgt gttctcacat ctcactccta      2880
     tgtcttttcc tgtctgttac tgccctcagt ggagcccaca gtgaccatct ccccatccag      2940
     gacagaggcc ctcaaccact acaacctgct ggtctgctcg gtgacagatt tctatccagg      3000
     ccagatcaaa gtccggtggt ttcggaatga tcaggaggag acagccggcg ttgtgtccac      3060
     cccccttatt aggaatggtg actggacttt ccagatcctg gtgatgctgg aaatgactcc      3120
     ccagcgtgga gatgtctaca cctgccacgt ggagcacccc agcctccaga gccccatcac      3180
     cgtggagtgg cgtaagggga tattgagttt ctgttactat gggcccacaa gacaaagagc      3240
     tccttctgac ccattccttc ccatctctta tccctgatgt cactactgag ctgggaatca      3300
     caggagacta gagcacctct tgctccatgg caagtgcatc agaagaatcc tggtctcatc      3360
     acctttccag atgctaggga aattactcta catactgttg ctctgaatcc cagtcctgat      3420
     agctctgagg gactgattct tagggctggt gactgggatc ttagggtcta aggttatgga      3480
     tgagttcttg aagagcagag atttgcttcc ccactctctc acctattcac tgtatccaag      3540
     gacctattgg ctggtctttc ccctccttag gggtggtctg aatggagaac taggttcctt      3600
     tgatgccttc accttctgca cctcagactg gacttcaact cctcagcagg gatgctatgg      3660
     ggtgtgggga caaacacaga cactcagttc tgctctttag gggctcagtc tgaatctgcc      3720
     cagagcaaga tgctgagtgg cgttggaggc ttcgtgctgg ggctgatctt ccttgggctg      3780
     ggccttatca tccgtcaaag gagtcagaaa ggtgaggaac cccaggggaa aaggggaaga      3840
     tgggctgtga cccagaccct ctgttcagag tggtcctgtc tgtagattag ctctttcctc      3900
     ctgaccctga gaagaagtgc gaggagacag gacaagatgg gaggaggcat tggaatctga      3960
     ttttactggt tgaaaggtag cgctgtcaca gagctgactg atagagctta ttccagggca      4020
     tccttaccat tcatcattgt ctcactggct cctttccaaa agcttcctcc attaagaggg      4080
     tcagagcctc agcttccttt ctttctagtg acaatttcct ttgttttagg ggattttaaa      4140
     ttagggtgct gaaggcctgg aagaacatgg gtgggaagag aatgtaactc taagtcatgt      4200
     gtgtcatttt cctttggggt gagagagtgg ctgtttgtgt aatgagacct ttctctgcat      4260
     aacttccttt tgtaagacct caagggcctc caccagcagg taatatttca gccatgatcc      4320
     agtgtgggga ggcacaggta taagagggaa gagcatgagc tgagtgtacc tgaccacagt      4380
     ggtccatgtt catggcctat ttgctgctat gaggatcaag acttagggga gaagtttgcc      4440
     agtttctagg aatctccaga cattgttccc cagaaccaag ccttaacttt ggtggcatct      4500
     tcttgtgaaa tgtggagcca gaaccacagc ttaaatgtta gacactagga tgatgcccac      4560
     tttgtgccac atgatggtgg ctactgcctg taagcatttt ccagtgactg aaagaggctg      4620
     ctagtggtcg ggaagagata tcatccaatt tcctaaaaag actgaaccct tcatattccc      4680
     cagaagaata acagctgttc cccacctccc acacatctgc atcaagctga agttctgtgt      4740
     cctcatgagc tgatttcacc tttgcacaga tcttggggga ggtgatgaca atacaccctg      4800
     gacctcaact ttctctgtct gaagctgcag ggggcccctg aagggtgggg gagatggcag      4860
     gcccaccagg ataccctgtg ctgatcaatg ctcttctctc ttctccaggg cttctgcact      4920
     gactcctgag actattttaa ctaggat                                          4947
//