Dbfetch
ID MK645227; SV 1; linear; genomic DNA; STD; HUM; 5691 BP. XX AC MK645227; XX DT 03-APR-2019 (Rel. 140, Created) DT 03-APR-2019 (Rel. 140, Last updated, Version 1) XX DE Homo sapiens clone ua2019tp642 MHC class II antigen (HLA-DQA) gene, DE HLA-DQA1*03 variant allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5691 RA Knutson C., Bengtsson M.; RT "New DQA1*03var"; RL Unpublished. XX RN [2] RP 1-5691 RA Knutson C., Bengtsson M.; RT ; RL Submitted (15-MAR-2019) to the INSDC. RL Clinical Immunology, Immunology, Genetics Pathology, Rudbeck laboratory, RL Uppsala SE 75185, Sweden XX DR MD5; b0d5112328ca97a08437ed36b84e1a90. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. 2019-03-05 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5691 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /clone="ua2019tp642" FT /db_xref="taxon:9606" FT gene <304..>5560 FT /gene="HLA-DQA" FT /allele="HLA-DQA1*03 variant" FT mRNA join(<304..385,4083..4331,4777..5058,5406..>5560) FT /gene="HLA-DQA" FT /allele="HLA-DQA1*03 variant" FT /product="MHC class II antigen" FT CDS join(304..385,4083..4331,4777..5058,5406..5560) FT /codon_start=1 FT /gene="HLA-DQA" FT /allele="HLA-DQA1*03 variant" FT /product="MHC class II antigen" FT /db_xref="GOA:A0A482LU68" FT /db_xref="InterPro:IPR001003" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:A0A482LU68" FT /protein_id="QBQ58349.1" FT /translation="MILNKALMLGALALTTVMSPCGGEDILADHVASYGVNLYQSYGPS FT GQYSHEFDGDEEFYVDLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSN FT STAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSF FT LSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCA FT LGLSVGLVGIVVGTVLIIRGLRSVGASRHQGPL" XX SQ Sequence 5691 BP; 1649 A; 1191 C; 1243 G; 1608 T; 0 other; agacatgcac acaccagaga agattccaat ttagtgtcct ccctctgttc atagaacaat 60 tcctcaagtc cactctgagt agaggctgca tcacaacaag gggattgccc tgtctccttc 120 cagggctctt aatacaaact cttcagctag taactgagat gtcaccatgg gggatttttc 180 taattggcca aaacctgacc tggcagggtt tggtttgggt gtcttcagat ttccttgtct 240 tgaggccctc acaattgctc tacagctcag aacagcaact gctgaggctg ccttgggaag 300 aggatgatcc taaacaaagc tctgatgctg ggggccctcg ccctgaccac cgtgatgagc 360 ccttgtggag gtgaagacat tttgggtgag tgcatgagtg aggaatgttc tctggagctg 420 aaaaacagta aattgaagga aaagagagaa agcgatttgc agagaaattg tagagatttc 480 ctaagacccc tttcagtatt aagagaatta aaaattatag ctgttcctcc ttcaggaaac 540 cagagcccca acctactctt tttgttatgt atgcttttgt gttcactaag gatgctattc 600 tgtttatatt atattcagtg acaacagcct ggaggtctct atgtcgttcc gtcatgattg 660 cctcaaaaat tagtgaagtt tccatcagtg gataattttt tattattaaa aatgtatgaa 720 gtgtcattct caaatttccc tgaacaactt ttgaagcttt tcgtatgtct cctgtagtag 780 atcttggggt cgttccatca attatatact ctatagatat taaaaaagtt gcccgtttct 840 ttctctcaga cttactcaca tttccacatg ggaactggca caggtgggga gtgggtaaag 900 gagtccagca ggctgaatgc cttcaacaat cattttacca catggtcctc acttactctc 960 agctgcctca tatgtgtcac ctcacaaata atcaaataaa atgggcatgt agctaagctt 1020 tgtaaatagt gaaaacatgg atgtcaattg tttttacata tttctattac aggtatagct 1080 tcacattttt ctttagcaaa ataagggatc cttttagttt aaaattgaga agtagaaaaa 1140 attggtaaat taaatcattt tattctcaaa ttatcaaccc aaattacctg ttcttcacct 1200 catctaataa agtcctataa aaagaaaagt gggccagaca tggtggctca tgcctgtaat 1260 cccagcactt tgggaggccg aagcaggagg atcatttgag cctgggagtt tgagaccagc 1320 ctgggcaaca tagcaagacc tcatctctac caaaaaataa aataaaaatt agccaggtgt 1380 ggtggtgcat gcctgtggtg ccagctactc agaaggctgc agtgggagga gcacttgagt 1440 ccaggaggtg gaagctgcag tgagccatga tggcaccact acactccagc cagggcaaca 1500 gagagagact ctgtctcaaa aagaaagagg aaagaaagag agaaaggaag gaaagaagga 1560 aagaaggaag gaaggaagga gaaagggaag ggaggaagga aaaaagaaag aaagaaagaa 1620 aacggaagga aggaagcaca gattaattat ttggtctctt tgtctcctct gcctttgtcg 1680 tccatctctt cccacctctc ttcatgcatt cctttctccc tcttcccttt caggatccat 1740 ctctgactcc ctgctccttt atagagatgg acagtgagtt tgtaaaacaa aagttgaaaa 1800 gtcagatagt taaaagggga agtgaactgg aaggtactct aaactttcac aaccttatta 1860 accatggctg ctcccattct gattttgttc agcagtggaa gtttcacccg ctcctccaga 1920 gcgcttggct tctttgttcc aaatttcctt tcttcaacct cacaccagag tgccctggtc 1980 aggctcagct catccattag gcacaatgtg ggcagtgcag gggaccctcc agactgtaaa 2040 gccacatgag aatgttttaa ctccttttaa aattataaaa aaatgaaatt gtagagccta 2100 agaaaatgtt ttaactttta attcagccta gattatattg tctttatacc aattcagtca 2160 taaaatatag ttttccatat ttttatggag gaaggcgtcc acacaagcaa gagtgcttgg 2220 ggctcacatg tcagaacgca accctgatca tggctgatcc tggccttcgt gtggttctgc 2280 taactatgtg cctgtcagtc ttccccaaaa tctatgtggt cctcaaatat aacaactgtc 2340 attcaataca catgtttgag cacccagtga gctaagtttt aaggattcaa agatgaaaag 2400 tcatgctgtc tcctctgcaa agggtgctca gactagtgat ggaaacagta tgggatgaaa 2460 gaaagcagaa ggccattgct gagcaggcag tggactcagc agaggctgaa actatacaag 2520 tgacttggtt ccagctgggc cagcaggata accagatgaa aagaaggatt gcatatattc 2580 catatatatt tatgtttgaa caaagagtca aggtttattg caaggataag gaggttttgt 2640 tggtggcctg ttaagaccat ccagggtggt catactggat agggaagaag gtgagctgga 2700 agaggaacag acaaacttgg atggccagat gttgagatgg aggagatgga ggtcataacg 2760 tggtcaaaaa catgttgatg agaggactta gctacaaagt tgttaactta agcagaaacc 2820 tcaaggattg attttatgat ttctccagga agtcctaaaa gttaatttca tttcagggag 2880 aaaaacaaca gaccactgca aagaccagga acatgaaagg ataatgtagt ttggtttgct 2940 tggcagatac ttgtgaaaga tgttggactg taaggctgtc aatatcctcc tcgcagaact 3000 tactacagta cattgtatct gctcccttac ctacctgact ctcccactat tcagtttgtt 3060 ccttaatggt agaccatgcc tgatcggtgt tttacacatc ccctgctatg tctgatactt 3120 gtggatgctc agaaagtggg gaaggaagga aagatacgat ggtaaaaggc ttacacatgt 3180 cttgagcaga atgttcagtt tggctcattt ggctggagtc atactgcatg gctgccattc 3240 tgctctggca tcctcagaga agcacactgc ccattaaagg aaaaagggtg aatacaaatg 3300 ttgagtcaga acactgcaga catttagtaa cctccttcag aggaaaaaaa aaggtggggg 3360 gaatgacaga aatccaaaaa ctagtagagc ttccactttt tcatttcaga agaaatcagt 3420 tactctcctc taaggaccat tactattaac aaaacagaga ccttagaagg aagcattatt 3480 tacttatcat atattttgta atgttattac ccttcttgtt atactctttc ttatacccta 3540 ccattgttag cagaaattat tttaaattaa taagatcctg catgcttttc ctttttctaa 3600 aaaaagaaag atctctgtgt agaatgtcct gttctgagcc agtcctgaga ggaaaggaag 3660 tataatcaat ttgttattaa ctgatgaaag aattaagtga aagataaacc ttaggaagca 3720 gagggaagtt aatctatgac taagaaagtt aagtactctg ataactcatt cattccttct 3780 tttgttcatt tacattattt aatcacaagt ctatgatgtg ccaggcactc aggaaatagt 3840 gaaaattgga cacgcgatat tctgcccttg tgtagcacac accgtagtgg gaaagaaagt 3900 gcacttttaa ccggacaact atcaacacga agaggggagg aagcaggggc tggaaatgtc 3960 cacagacttt gccaaagaca aagcccataa tatctgaaag tcagtttctt ccatcatttt 4020 gtgtattaag gttctttatt cccctgttct ctgccttcct gcttgtcatc ttcactcatc 4080 agctgaccat gttgcctctt acggtgtaaa cttgtaccag tcttatggtc cctctgggca 4140 gtacagccat gaatttgatg gagacgagga gttctatgtg gacctggaga ggaaggagac 4200 tgtctggcag ttgcctctgt tccgcagatt tagaagattt gacccgcaat ttgcactgac 4260 aaacatcgct gtgctaaaac ataacttgaa catcgtgatt aaacgctcca actctaccgc 4320 tgctaccaat ggtatgtgtc caccattctg cctttcttta ctgatttatc cctttatacc 4380 aagtttcatt attttctttc caagaggtcc ccagatcttc tcatggcaat tgctgaaatt 4440 ttatcatttc tcatctctaa aatcacatat tccaatgtaa tacaagggtc tttccattat 4500 gcattcatta aatccttcta ggagaggtct catcaacctt ctactttatt aaacatgccc 4560 acagagagaa gggcacagga gtaaagcaga ggcaatgtgt cgttgctccc aaatgtgtcg 4620 ttacaatgtg tcgttgctta cccaaagagg taaataaggc ctctttgacc agcaggagag 4680 gaaatgctgg taggaagact cttccaggat gtaatgcaga agaagctcag ggcagagcta 4740 ttcacacttt acaccagtgc tgtttcctca ccatagaggt tcctgaggtc acagtgtttt 4800 ccaagtctcc cgtgacactg ggtcagccca acaccctcat ctgtcttgtg gacaacatct 4860 ttcctcctgt ggtcaacatc acctggctga gcaatgggca ctcagtcaca gaaggtgttt 4920 ctgagaccag cttcctctcc aagagtgatc attccttctt caagatcagt tacctcacct 4980 tcctcccttc tgatgatgag atttatgact gcaaggtgga gcactggggc ctggatgagc 5040 ctcttctgaa acactggggt aaggatgagt ttcaccattt tttgatgctt tcttgtctgt 5100 caagttcaga acttcctgcc ttttactcta tatcccaaaa cttgttttcc acacttcatg 5160 agtttctttt gtcttttttt tgaaagaatt aagcaacaaa agcacagatt tattaaaaaa 5220 gaaagtacac tccacagggt gggagcaggc ctgccacttc atgggtttct aataacagac 5280 ttcactctcc tccctaagct gggggccttg agtctttgca gagccaaccc tctaccccat 5340 cccatcccac acacatgcac atgagcaaac tctgcattct gacctcaaca acttcacttc 5400 cacagagcct gagattccaa cacctatgtc agagctcaca gagactgtgg tctgcgccct 5460 ggggttgtct gtgggcctcg tgggcattgt ggtggggacc gtcttgatca tccgaggcct 5520 gcgttcagtt ggtgcttcca gacaccaagg gcccttgtga atcccatcct gaaaaggaag 5580 gtaagattga gatttgttag agctgaagct gcaggaagga aagtgggagg aggctgtgga 5640 catgaatgtg gttgaaagtt gtaggggaat tgggaagtgg catgatgatg a 5691 //