Dbfetch
ID MK524387; SV 1; linear; genomic DNA; STD; HUM; 6627 BP. XX AC MK524387; XX DT 25-SEP-2019 (Rel. 142, Created) DT 25-SEP-2019 (Rel. 142, Last updated, Version 1) XX DE Homo sapiens MHC class II antigen (HLA-DQB1) gene, HLA-DQB1*04:02:01:04 DE allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-6627 RA Walencick A., Cesbron Gauthier A., Alizadeh M.; RT ; RL Submitted (14-FEB-2019) to the INSDC. RL LNPRM, EFS, Rue pierre Jean Gineste, RENNES, Bretagne 35016, France XX DR MD5; 34e6d06adad453001a7a39ebf29ed9d4. XX CC ##Assembly-Data-START## CC Assembly Method :: Profiler HLA v. 0.0.0.1 Rev2.0.233 CC Assembly Name :: Profiler HLA CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6627 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene 1..6627 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*04:02:01:04" FT mRNA join(1..241,1696..1965,4496..4777,5293..5403,5873..5896, FT 6507..6627) FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*04:02:01:04" FT /product="MHC class II antigen" FT 5'UTR 1..132 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*04:02:01:04" FT CDS join(133..241,1696..1965,4496..4777,5293..5403,5873..5896, FT 6507..6520) FT /codon_start=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*04:02:01:04" FT /product="MHC class II antigen" FT /protein_id="QEQ55499.1" FT /translation="MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVFQFKG FT MCYFTNGTERVRGVTRYIYNREEYARFDSDVGVYRAVTPLGRLDAEYWNSQKDILEEDR FT ASVDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRW FT FRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRA FT QSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKGPQGPPPAGLLH" FT 3'UTR 6521..6627 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*04:02:01:04" XX SQ Sequence 6627 BP; 1667 A; 1518 C; 1631 G; 1811 T; 0 other; tcctttccaa aggaccatcc aatcctgcca cgcagggaaa catccacagg tttttattct 60 ttctgccagg tacatcagat ccatcaggtc caagctgtgt tgactaccac tacttttccc 120 ttcgtctcaa ttatgtcttg gaagaaggct ttgcggatcc ctggaggcct tcgggtagca 180 actgtgacct tgatgctggc gatgctgagc accccggtgg ctgagggcag agactctccc 240 ggtaagtgca gggccactgc tctccagagc cgccactctg ggaacaggct ctccttgggc 300 tggggtaggg ggatggtgat ctccatgatc tcggacacaa tctttcatca acatttcctc 360 tctttgggga aagagaacga tgttgcattc ccatttatct tttagtgatg aggtgagcac 420 agtcggatcc ccatcctaca ggcttaagcc tggaagagaa ggagagagga gaggaaagag 480 gagacaaagt gtacatttac taccagtgac aggacaaagt gagcatgggg ttatttttga 540 agatatgaat ttctccagag acacagcagg atttgtcatt taggcgtgcc ccaagacttt 600 gcctggacta aatattatgg gatcctgcat tgggaaatgt aaggcagcaa tggtgtctgt 660 agtctccgta tttgaggaaa agttgtctgt attcctgact gactggagcg tttgtggagg 720 caaaatcttg gtactgaagg aagctgactg gatgaccaca gacagggagt cttcaggttt 780 cactgattta tgggcaaatg gtgacttgag tgggattcag agacccgagt tggtggactg 840 aatttagcag aaaggaggat gtaaagaagg gaaataacat atattgtgaa accactcatt 900 tcagacacag cacaatactt tacataaatt ctctctcact ccttctaaca tcctgtgtgt 960 agatatcatg attttctttt acacaattat acttgtgata tggatattct gttacatacc 1020 tgccctagct ggtgactgcc acagcttaat tggaatctag tttatcaaat tcaaaagctt 1080 gtgctctttc catgaataaa tgtttctttc taggactcgg aggtgtaggt cctttctaac 1140 ataaaagtga gtgaacctca catggcattc ggaagggtaa atccaggcat gggaagggag 1200 gtattttacc gagggaccaa gagaatacgc atatcagaac gaggacaggc ttaatttctg 1260 gacccgtctc atcattccct tgaactccca ggtttatgtg gataatttta tctctgaggt 1320 ttccaggagc tcaatggaaa atgggatttc atgcgagagc gccctgattc cctctaagtg 1380 cagaggtcta tgtaaaatca gcccgactgc ctcttccctc ggttcacagg ctccggcagg 1440 gacagggctt tccgcccttt cctgcctgca ggaaggcgga ttccggaagc ccccagagag 1500 ggcgggcagg gctgggcagg gctgggcaga gccgccgggc ggatcacaag tctggagcgc 1560 caggcacggg cgggcgggaa ctggaggtcg cgcgggcggt tccacagctc cgggccgggt 1620 cagggcggcg gctgcggggg cggccgggct ggggccgggc cggggcctga ctgaccggcc 1680 ggtgattccc cgcagaggat ttcgtgttcc agtttaaggg catgtgctac ttcaccaacg 1740 ggaccgagcg cgtgcggggt gtgaccagat acatctataa ccgagaggag tacgcgcgct 1800 tcgacagcga cgtgggggtg tatcgggcgg tgacgccgct ggggcggctt gacgccgagt 1860 actggaatag ccagaaggac atcctggagg aggaccgggc gtcggtggac accgtatgca 1920 gacacaacta ccagttggag ctccgcacga ccttgcagcg gcgaggtgag cgtcgtcgcc 1980 cgtctgcgag gcccatcctt ggcaggggcc cagagtctct gcgccaggag gggcgaaggg 2040 ggcgcggcct ctggaacctg agccttgttc gttccacccc ggctgacagg aggcggcggt 2100 gggggtgctg ggggctggtg catcggaggg gcagggacct agggcagagc agggggacag 2160 gcagagttgg tcaagctgcc tagtttcgcc ccatcctccc cgtccgtcgg cctcgccctc 2220 tgctctgcac gttcttgcct cgtgccttat gcgtttgcct cctcgtgcct tacctttact 2280 aagcagttct ctctgccccc aatttccgcc ctcttcccct gcccgcccgc ccggctagca 2340 ctgccgcacc cggcaaggtc cacctacaca gctcatgcag tgggaagctt cagacttggc 2400 ctgatggagt tagggctgcc ccacaactgc gcgcagggca tccagcaatt acagttgtca 2460 aataagatat tttgattttt gacttcaaat tattattcat cgtaattctg ttttcttaaa 2520 tggctctcat tcatggcgga gctctttgag atgagagtgt tttaatcatt gcatgcctgg 2580 tatctgacac attgactggc atgtggtatg agctcaatga tcttctgtta aattaatgaa 2640 taaatgtgct cagctgccaa tccacttagg ctcaagggaa agcagaggat aaatagagcc 2700 ttaaaaatgg acttttatta attattttct gtcattttgc ttaattcttt aaagtaaact 2760 cttattgact tgaatcttaa tagagtttgt gaatacaaag tctgaggaaa aaagtgtttg 2820 ctaaaaataa aaacaacact tgaatgatgt ttgtaaggca gttttaattt cttagaaaag 2880 ctgaacaaat ggcacaatgc aaagagcaga agttttggaa taaatagatt gaagcaatta 2940 aattattgga taaaaatagt ttcaggttgc ttttggctta ggttctcccc tccccccatc 3000 actatccact tcaggaataa acattctgaa agtcaatttt acccatttag tgagcactta 3060 tttctagaca gttaccttat caaataccat ctatgttacg tcatttaatc tcacagttgc 3120 ctgtgcatta gggattagca tcaccacttt atatatccta atattagtac atgataaaca 3180 ctttaagtaa tcagcccaca agtactcacc aagaccttaa gcctcccaaa gtacacaata 3240 ttctttatgt tcttcactac acatctatag agtcaaaggg acataaagcc ttgttaaagc 3300 cagttttgac tagaagcagc aatgagtctc atcctgtttg atctccatgt taatgggaca 3360 aaatgatact ttcaaggcat tgaaaattta tgattaatca atccctagtc tgactccagt 3420 gttacctatg cagattcaca aaacttttag tttactttac actcccttgc cttcttttga 3480 ctcacatcgt agtgccagca agtacttaca tttttgctat tttggttcta tttccataaa 3540 atttatttta tcatcttttc tcataaattt gtgccctcta ttttactccc agtctgtgta 3600 agatgaacaa atcttataag gccacatagc tgactgtgat ttcaggtgga ctccaggaag 3660 gagaaccaaa gaaaagttca agtccaagca gaaaccgtga ttccttccgg atgatggctc 3720 aagagtgcct tttaattggg gtgcaacctg ctgacctcag caaatctcag ctatatttat 3780 atgttcacat tacaggctca ttaacctagg ctgatctctg caaggatctc agaatatttt 3840 ctacagataa catacatgat aatatctgat ttcaggacaa aaaagtaatt ctcaatagca 3900 agggaatgga gtagggtaga cagctagtaa ttaaactcac ttgtatgtta aaaataaatt 3960 aaggaaaaaa agaaaatgag agaacatatt actaaataaa gaaagcatac attaaatatt 4020 tactatagtt tcacactaag agaataaagg aaatgcaata aagtggcctg aaagataaag 4080 gatgagatgt gtaaagagac agggaaagat gtgtcatttt tttactatga gcagcagtct 4140 gagaagataa aggaatcgag ttatgggcaa acatgatgtt tgatcagtgc tatttgtttt 4200 gaaggcctgc ctacttttgt ttcaaatatt acagactttt gaaatcacat tctttttgtt 4260 ttttgctgtc tgttactaga tcgcacattc tgtaaaggca gggaccatgg tatgttgttt 4320 atctttggat tctcagtgat tgtcatattt atatttgttg aatgaatctt aatccaagac 4380 ttggactcca ggtatctttc cactctggtt ccaaggaggg accattccca atggtagacg 4440 tgctgtgtgg tctcacatct cactcctgtc ttttcctgtc tgttactgcc ctcagtggag 4500 cccacagtga ccatctcccc atccaggaca gaggccctca accaccacaa cctgctggtc 4560 tgctcagtga cagatttcta tccagcccag atcaaagtcc ggtggtttcg gaatgaccag 4620 gaggagacaa ctggcgttgt gtccaccccc cttattagga acggtgactg gaccttccag 4680 atcctggtga tgctggaaat gactccccag cgtggagacg tctacacctg ccacgtggag 4740 caccccagcc tccagaaccc catcatcgtg gagtggcgta aggggatatt gagtttctgt 4800 tactatgggc cccacaagac aaagggcaga gctccttctg acccattcct tcccatctct 4860 tatccctgat gtcactactg agctggggat cacaggagac tagagcacct cttgctccat 4920 ggcaagtgca tcagaagaat cctgatctca tcacctttcc agatgctagg gaaattattc 4980 tatgtactgt ttctccagat cccagtcctg atagctcgga gggactgatt attagggctg 5040 gtgactggga tcttagggtt taaggtatgg atgagttcct gaggagtgga gatctgcttc 5100 cccgctctct cacctactca ctgtaccgaa ggacctattg gctggctttc ccctccctta 5160 ggggtggtct gaatggagga ctaggttcct ttgacacttt cacctcctgc atctcagact 5220 ggacttcagc tcctcagcag ggatgctatg gggtgtaggg acaaacactg acactcaggc 5280 tctgcttctt aggggctcag tctgaatctg cccagagcaa gatgctgagt ggcattggag 5340 gcttcgtgct ggggctgatc ttcctcgggc tgggccttat tatccatcac aggagtcaga 5400 aaggtgagga accccaaggg aaaaggggaa gatgggctgt gacccagacc ctctgttcag 5460 ggaggtcctg tctctagatg tggctctttc ctcctgaccc tgagaggaag aaaactgagc 5520 tggaggtggg aggagacagg acaagattgg aggaggcatt actagctgaa aggtagccct 5580 gtcacacagg tgactgatag agcttattcc aggatgtact tactgttcat cgtctcattg 5640 gctcctttcc aaaagcttcc tccattaaga gggtcagagc cttggcctcc ttgccttcta 5700 gtgacaattt cctttgtttt aggggatttt aaattagggt acttaaggcc ttgaagaaca 5760 tgagtggtaa gagaatataa ctctaattaa gtcacatgtg tcattttcct ttggggtgag 5820 agagtggctg tttgtgtaat gagacctttc tctgcataac ttccttttgt aagacctcaa 5880 gggcctccac cagcagatga tatttcagcc atgagccagt gtgggggggc acaggtgtaa 5940 gagggaagag catgagctga atgcacctga ccacaatggt ctctgttcat ggtatatttg 6000 ctgctatgag gatcaagact tagggtcgaa gtttgccagt ttctaggaat ctccagaggt 6060 tgttccccag aaccaagcct taactttggt ggtatcttct tgtgaaatgt gaagccagaa 6120 ccacagctta aatgttagac aagaggatga tgcccacttt gtgccacatg ttggtggcta 6180 ctgcctgtag gcattttcca gtgactgaaa gaggctgcta gtggtaggga tgaggtatca 6240 tccaattttc taaaaagatt gaacccttca tattccccag aagagtaaca gctgttccgc 6300 cacttcccac atatctgcat caagctgaag ttctgtgtcc tcacgagctg atttcacctt 6360 tgcacagatc ttgcgggagg tgacgataat acattctgga cctcagcttt ctctgtctga 6420 agctgcaggg ggcccctgag gggtggggga gattgcaggc ccaccagcgt accctgtgct 6480 gatcatccct cttctctctt cttcagggct cctgcactga ctcctgagac tattttaact 6540 gggattggtt atcacttttc tgtaacgcct gcttgtccct gcccagaatt cccagctgcc 6600 tgtgtcagcc tgtccccctg agatcag 6627 //