Dbfetch
ID MK480464; SV 1; linear; genomic DNA; STD; HUM; 4099 BP. XX AC MK480464; XX DT 04-SEP-2019 (Rel. 142, Created) DT 04-SEP-2019 (Rel. 142, Last updated, Version 1) XX DE Homo sapiens MHC class II DP alpha chain (DPA1) gene, DPA1*01var allele, DE exons 2 through 4 and partial cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-4099 RA Gautreaux M.D., Kiger D.F., Ingram K.J., Brown S.B.; RT ; RL Submitted (01-FEB-2019) to the INSDC. RL Pathology - HLA/Immunogenetics Laboratory, Wake Forest Baptist Health, RL Medical Center Blvd, Winston-Salem, NC 27157, USA XX DR MD5; 2b2f1c1612f3b69010dd4743fcd6ff85. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. 2.12.0.12130 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4099 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <1..>4099 FT /gene="DPA1" FT /allele="DPA1*01var" FT mRNA join(<2933..3178,3519..3800,4015..>4099) FT /gene="DPA1" FT /allele="DPA1*01var" FT /product="MHC class II DP alpha chain" FT CDS join(<2933..3178,3519..3800,4015..>4099) FT /codon_start=3 FT /gene="DPA1" FT /allele="DPA1*01var" FT /product="MHC class II DP alpha chain" FT /protein_id="QEJ65838.1" FT /translation="DHVSTYAAFVQTHRPTGEFMFEFDEDEMFYVDLDKKETVWHLEEF FT GQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPEVTVFPKEPVELGQPNTLIC FT HIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKFHYLTFMPSAEDFYDCRVE FT HWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGI" FT exon 2933..3178 FT /gene="DPA1" FT /allele="DPA1*01var" FT /number=2 FT exon 3519..3800 FT /gene="DPA1" FT /allele="DPA1*01var" FT /number=3 FT exon 4015..>4099 FT /gene="DPA1" FT /allele="DPA1*01var" FT /number=4 XX SQ Sequence 4099 BP; 1077 A; 977 C; 771 G; 1274 T; 0 other; caggactgca agggaggcct agacttttga tagctgcaag gactcagcca gagatggacc 60 gtagtgaatg ctcctttttc ctgtagctga aatcagggag aatgacatca agcctgtgca 120 tgatgctgtc attccaaaat ctagtgatgg ggaaggttag aatccataac gtacaagatg 180 cacactggct tcagacagtt ttatttaaga tgtgtagaat aaagaggagg tcaggctggg 240 tagaaccaga agtatctatt gccctgttcg cggtcacctg agttatttct aatgttatgt 300 tataataaac accacaatag gcttctcttc atagatgcaa atacttttta gtattcttgg 360 tagaaattcc taatgagctc agctgtctct tcagggcttc cctgcccagt ctcttaacat 420 ttaaacatgt catttacctt aaaaacataa gtgcaaacca actgataaaa aacaaccttg 480 ccttcagtct gcatcctgtc ccagagacac tttctttgtg tcctcacacg tggagctaag 540 cttctgactt gtctctggta catccctgag gatcctctca tcttggccat caggaacctc 600 tacagaaggt caaattcagt gggttcttct cagtgcctct gacttgagtt actaataaca 660 tttgcactat aatccacttc tttctgatga actaccctgt ccttattttt ctcctgttta 720 cctggatcct ccttatcatc ttttaaacca cctcttaact atcatgttct ctcattatac 780 cctgagatct cggcaattct gatttttggc actcttcctg gaaaatctta tttaacctgc 840 acctgccact aatgactctc agttctatgg cctaaattcc tctcctgaga ccacccataa 900 tccacaaata tctatgtatt atttctcctt agatgacttt caggtcttct aagtgcaata 960 gccccacagt aaactcagta tcttctcccg gtcaggctgt cttccctgag agaagtggct 1020 tttgccctgt tttctgaatg cctacattga agccatctgt tccccaggaa gccttccctg 1080 atgtgctgtt tggtcgcatc ttgtgtatac ctacgtatct gcacttatcc ttctgaacct 1140 gctgttgtcc tgtcacttgt gtttccttct gtgacttata cgcgtctgca gaacaggacg 1200 tatgtattat ttttatttgg gtatttagca tctaacagtg tttgacatat agtagtcttt 1260 taatacatat ttttgtctga atggaaatga tattttgaag aaaaataatc tgttccatag 1320 ctggctgatc tttggactgc agaacttgtg aaagtgtttt ttaaaaagca ttttaaaaag 1380 tacaagggac attcatgtat taagaagatg agtttccaat aactgctaga ggactttgtg 1440 tctttttatt ttaccctctt tttcctgatg agtcctttga gtcctttaaa ctgaggagca 1500 agctaagttt cctagtgaaa tacctatagg atttgttttg tttagtttca aataccactc 1560 tttgcttggc cacttactgt gtcagggagt cattctcagt gaaaaataag acacaggtca 1620 taccctctag acacttacaa ttacagtggc aaggagtcat tctcctgtca ctgtaagtgg 1680 ccaagcacag actgggtccc cacatgtcag ggctgaaaac tcacagggaa atctgtgagt 1740 tgggaggtga gagcagaaga gtcccgtagt tccttctcac tctgatgcat ttatcattct 1800 aaacccagac tttcacatac acattcatcg ttttctttca tgataatagt tgcttttatc 1860 ctcttatctt tgctaattct tacaaactaa taaagactaa gaaacaaaat aaattaaatc 1920 ctacaggtgt tccaaactca gcaataattt ctagttggcc tctaaaacaa aaatcaaaat 1980 ataaatgtaa gaaaagttta gaatgcttag tacctgtgtg atgaaataat ctgtacacta 2040 aacccccaag tcatgagttt acctatacaa caaacctgca catgtactcc tgaacataaa 2100 ataaatgttg aaatattttt aaaaaggaaa caaaagtttg gaacaaatgc caaaataact 2160 gtactgtact tttgaattta tatgccccaa atgaaaaata ttatcaacaa agctatacat 2220 tctacagttt catgttcata aactaagaca gaaactttaa aactgtcaag agccctaaaa 2280 tttgaaggat attttcttct tcctctcaat tttgtatttt tttctacctt ttctataata 2340 agaaaaagaa aatgtccatt cccccacccc catgactcta aaaacaattt tacatctgtg 2400 tcatagaaaa attaagatct taatgggaga gaaaacctct ctactagttc cgccagtagc 2460 cgtatgacct tagcaagtta ttaatatgta acttccctgc atttccttac ctgtaaaatg 2520 tatgatatgt atttgcttca tagggttatt gtgacaattc agcgagtgaa atatgtaaag 2580 tatttagaag gatgcctggc acaagtaagt gctcaacaaa tgttagctgt cattgttact 2640 attactattg tgtagggtca ggatgcccag actttcaaag accaggaagc agcttgactt 2700 atcagtgata aacttttcat tttgttcttt gctcctttct ttttataact gctcatctgc 2760 tctgtattat ttcctttatg gtgttgctcc ttcttcttcc ccatatgtcc ttcctttgac 2820 ctcttacctt cttccttttt atattcataa gtctttattc attctctagc tttgaccact 2880 tgcatattca aactgacatt ttgtcgtgtt tttctctact gtctttatgc agcggaccat 2940 gtgtcaactt atgccgcgtt tgtacagacg catagaccaa caggggagtt tatgtttgaa 3000 tttgatgaag atgagatgtt ctatgtggat ctggacaaga aggagaccgt ctggcatctg 3060 gaggagtttg gccaagcctt ttcctttgag gctcagggcg ggctggctaa cattgctata 3120 ttgaacaaca acttgaatac cttgatccag cgttccaacc acactcaggc caccaacggt 3180 acgccctatc tttgcctctt cctctgtagc ccaactggaa gggatgagag ggcctctctg 3240 ccaccctcag actaggaagc ctaagtgccc cctgctgtgt gatcctcttc ccctagtggc 3300 catgggctga tcccactaca gcaagggctt gcatcctctc ttctcaggag agagaaaggt 3360 gagcagagtg aggctggtca gtggtgtgat acccctctct gtgattcaga gctgccataa 3420 aatctaaggc tgaggtagag gaccaccctc ccctaagagg tggagccttt gtgattcatc 3480 ccagaagagg ggcctaacct ggtgctgtct ccttccagat ccccctgagg tgaccgtgtt 3540 tcccaaggag cctgtggagc tgggccagcc caacaccctc atctgccaca ttgacaagtt 3600 cttcccacca gtgctcaacg tcacgtggct gtgcaacggg gagctggtca ctgagggtgt 3660 cgctgagagc ctcttcctgc ccagaacaga ttacagcttc cacaagttcc attacctgac 3720 ctttatgccc tcagcagagg acttctatga ctgcagggtg gagcactggg gcttggacca 3780 gccgctcctc aagcactggg gtatgcaact gcttttctct ccataatctc ctggcatcct 3840 ctattccaaa gacctggtgt cctctgcacc agctttccgc actggctggg tctcagtcct 3900 ctcctcgtcc taacatccaa ttaactggtc cataaccttc aattcccaca accatcccag 3960 gccatcacca ccctcactgc acctcctgac cctatctctt cattcttccc ccagaggccc 4020 aagagccaat ccagatgcct gagacaacgg agactgtgct ctgtgccctg ggcctggtgc 4080 tgggcctagt cggcatcat 4099 //