Dbfetch
ID MK478061; SV 1; linear; genomic DNA; STD; HUM; 5530 BP. XX AC MK478061; XX DT 16-JUN-2019 (Rel. 141, Created) DT 16-JUN-2019 (Rel. 141, Last updated, Version 1) XX DE Homo sapiens cell line FH11 MHC class II antigen (HLA-DQA1) gene, DE HLA-DQA1*01:01:01:NEW allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5530 RA Hayward D.R.; RT "A novel HLA-DQA1*01:01:01:NEW allele as identified in cell line FH11"; RL Unpublished. XX RN [2] RP 1-5530 RA Hayward D.R.; RT ; RL Submitted (31-JAN-2019) to the INSDC. RL Research and Development, Anthony Nolan Research Institute, The Royal Free RL Hospital, London, London NW3 2QU, UK XX DR MD5; 4e84ef835d89f8ba98dd1be0f230b745. XX CC ##Assembly-Data-START## CC Assembly Method :: SMRT v. 5 CC Assembly Name :: HLA-DQA1*01:01:01:NEW_FH11 CC Coverage :: 5UTR to 3UTR CC Sequencing Technology :: PacBio CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5530 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="FH11" FT /db_xref="taxon:9606" FT gene <98..>5406 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:01:01:NEW" FT mRNA join(<98..179,3950..4198,4612..4893,5252..>5406) FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:01:01:NEW" FT /product="MHC class II antigen" FT CDS join(98..179,3950..4198,4612..4893,5252..5406) FT /codon_start=1 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:01:01:NEW" FT /product="MHC class II antigen" FT /db_xref="GOA:A0A0C7DW92" FT /db_xref="UniProtKB/TrEMBL:A0A0C7DW92" FT /protein_id="QCZ35724.1" FT /translation="MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPS FT GQYTHEFDGDEEFYVDLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYN FT STAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSF FT LSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCA FT LGLSVGLVGIVVGTVFIIQGLRSVGASRHQGPL" XX SQ Sequence 5530 BP; 1610 A; 1148 C; 1235 G; 1537 T; 0 other; ggtttggttt gggtgtcttc agatttcctt gtcttgaggt cctcacaatt actctacagc 60 tcagaacacc aactgctgag gctgccttgg gaagaggatg atcctaaaca aagctctgct 120 gctgggggcc ctcgctctga ccaccgtgat gagcccctgt ggaggtgaag acattgtggg 180 tgagtgcatg agtgagggat gttctctgga gctgaaaaac agtaaattga aggaaaagag 240 ataaagcgat ttgcagagaa actgtagaga tttcctaagg gccctttcag tattaagaca 300 attaaaaatt atagctgttc ctccttcagg aaaccagagc cccaacctac tctttttgtt 360 atctatgctg ttgtgttcac taaggacgct attctgttta tattatattc agtgactaca 420 gcctggaggt ctctatgtcg ttccgtcatg attgcctcaa aaattagtga ggtttccatc 480 agtggataat tttttattat taaaaattta tgaagtgtca ttctcaaatt tccctgaaca 540 acttttgaag cttttcggat atctccggtg gtagatcttg gggtcattcc atcaattatg 600 tactctatag atatttaaaa tgttgcccat ttctttctct cagacttact tacatttcca 660 catgggaact ggcacaggtg gggagtgggt aaaggagtcc agcaggctga atgccttcaa 720 caatcatttt accacatggt cctcacttac tctcagctgc ctcatatgtg tcacctcaca 780 agtaatcaaa taaaatgggc atgtggctaa gctttgtaaa tagtgaaaac atgaatgtca 840 atttttttta catatttcta ttacagatat agcttcacat ttcttttctt tagcaaaata 900 agggatcatt ttattttaaa attgagaagt agaaaaaatt ggtaaaataa atcattttat 960 tctcaaatta tcaacccaaa ttacctgttc ttcacctcat ctaataaagt cctataaaaa 1020 gaaaagtggg ccagacaagg tggctcatgc ctgtaatccc agcactttgg gaggccgagg 1080 caggaggatc atttgagcct gggagcttga gaccagcctg ggcaacatag caagacctca 1140 tctctacaaa aaaagaaaaa taaaaattag ccaggcatgg tggtgtgtgc ctgtggtgcc 1200 agctactcag aaggctgccg tgggaggacc acttgagtcc atgaggcgga agctgcagtg 1260 agccatggtg gcaccactac actccagcca gggcaacaga gagagacgct gtctcaaaaa 1320 gaaagaggaa agaaagcgag gaaggaagga aggaaggaga aggaaggaag gaaggaaaag 1380 aaaagaaaag ggaagggagg aaggaaggaa aaaagaaaga cagaaagaaa gaggaaggaa 1440 agaagaaagg aagcacagat aattatttgg tctcttactc tcctctgcct ttgtcgtcca 1500 tctctttcca cctctcttca tgcatccctt tctccctctt ccctttcagg atccatctct 1560 gactccctgc tcctttatag agatggacag tgggtttgta aaacaaaagt tgaaaagtca 1620 gatagttaaa aggggaagtg aactggaagg taccttaaac tttcacaact ttattaaccg 1680 tggctgctcc cattatgatt ttgttcggca gtggaagttt cacctgcttc tccagagcac 1740 ttggcgtctt tgttccaaat ttcctttctt caacctcaca ccagagtgcc ctggtcaggc 1800 ttggctcatt cattaggcac aatgtgggca gtgcagggga ccctccatac tgtaaagcca 1860 catgagaagg ttttaactcg ttttaaaatt agaaaaataa tggaatatta gagcctaaga 1920 aaatgtttta acttttaatt cagcctagat tatattgtct ttataccaat tcagtcataa 1980 aatataattt tccatatttt tgtggaggaa gaggcccata caagcaagaa tgctcggggc 2040 tcacatgtca gaatgcagcc ttggtcatga ctgatcctgg ccttcgtatg gttctgctac 2100 ctgtgtgcct gcccgtcttc cccaaaatct atgtggtcct cgaatatagc aactgtcatt 2160 caacacacat gtttgagcac acagtgagct aagttttaag gattcaaaga tgaaaaatca 2220 tgctgtcttc cctgcagagg gtgctcagat tagtgatgga aacagtatgg ggtgcaggaa 2280 agcagaaggc cattgctgag cagggcagtg gacccagcag aggctgaaac aatacaagtg 2340 acttggttcc aggtgggcca gcagggtgac gtcctctagc aaaatttggc acccaagaca 2400 agtaccagaa gaaaagaaag actgcatgta ttccacatat attcatgttt gaacaaggag 2460 tcaagattta tggcaaggat aaggaggctt tgttggtgac ctgttaagac caaccagggc 2520 agtcatgctg gatagggaag aaggtgagct ggaagaggaa cagacaaact tggacagcca 2580 gatgttgaga cggaggggtt ggaggtcata atgtggtcaa aaacatgttg atgagaggac 2640 tcagctacaa agttgttaac ttaagcagaa acctcaagga tggattttag aatttctcca 2700 ggaagtccta aaagataatt ccatttcagg gagaaaaaca acagaccact gcaaagacca 2760 gggaacatga aaggataatg tagtttgtct tgcttggcag atacttttga aggatgttgg 2820 actgtaaggc tgtcgatatc ctcctcagag aacttactac agtacattgt atctgttccc 2880 ttacctacct gactcttcca ctattcagtt tgttccttaa tggtagacca tgcctgattg 2940 gtgttttaca catctccggc tatgtctgac acttgtggat gctcagaaag tggggaagga 3000 aggaaagata cgatggtaaa aggcttacac atgtcttgac aaaaaagtcc agtttggctc 3060 atttggctgg agtcgtactg catggctgcc attctgctct ggcatcctca gacaagcaca 3120 ctgcccatta gaggaaaaag tgtgaatata agtgttgagt cagaatgctg tagacattta 3180 gtaacctcct tcacaggaaa aaaaaaaagg tggggggaat gacagaaatc caaaaactag 3240 tagagcttcc acttttcatt tcagaagaaa tcagttgctc tcctctaagg accattacta 3300 ttaacaaaac agagacctta gaaggaggca ttgtttattt attatatatt ttgtaatgtt 3360 attaccaatc ttgttatact ctttcttata ccctacaatt gttagcagaa attattttaa 3420 attaataaga tcctgcatgc ttttccttta aaaaaaaaaa aaaaaagaaa gatctctgtg 3480 tagagtgtcc tattctgagc cagtcctgag aggaaaggaa gtataatcaa tttgttatta 3540 accaatgaaa gaattaagtg aaagataaat ctcaggaagc agagggaagt aaacctaatt 3600 tctgactaag aaagctaaat actatgataa cttattcatt ccttcttttg ttcaattaca 3660 ttatttaatc ataagtccat gacgtgccag gcactcagga aatagtaaaa attggacatg 3720 tgatattctg cccttgtgta gcgcacacta gagtgggaaa gaaagtgcac ttttaactgg 3780 acaactacca acatgaagag gggaggaagc aggggctgga aatgtccaca gactgtgcca 3840 aaaaatgaag cccataatat ttgaaagtca gtttcttcca tcattttgtg tattaaggtt 3900 ctttcttccc ctgttctccg cctacctgct tgtcatcttc actcatcagc tgaccacgtt 3960 gcctcttgtg gtgtaaactt gtaccagttt tacggtccct ctggccagta cacccatgaa 4020 tttgatggag atgaggagtt ctacgtggac ctggagagga aggagactgc ctggcggtgg 4080 cctgagttca gcaaatttgg aggttttgac ccgcagggtg cactgagaaa catggctgtg 4140 gcaaaacaca acttgaacat catgattaaa cgctacaact ctaccgctgc taccaatggt 4200 atgcgtccac cattctgcct ctctttactt aagctatccc tccataccag ggttcattat 4260 tttcttccca agaggtcccc agatcttctt atggcaattg ctgaaatttt atcatctccc 4320 atctctaaaa tcacatattc ccatgtaata caagggtctt tccattatgc attcagcaaa 4380 tccttctagg agaggtctca tcaacctcct actttattaa acatgcccac agagagaagg 4440 gcacaggaat aaagcagagg caatgtgtcg ttgctcccaa gcagaaggta aataagacct 4500 ctttgactat caggtggtga aatgctggta ggagggctct tccaggatgt aatgcagaac 4560 ttcagggcag agctattcac acttcacacc agtgctgttt cctcaccaca gaggttcctg 4620 aggtcacagt gttttccaag tctcccgtga cactgggtca gcccaacacc ctcatttgtc 4680 ttgtggacaa catctttcct cctgtggtca acatcacatg gctgagcaat gggcagtcag 4740 tcacagaagg tgtttctgag accagcttcc tctccaagag tgatcattcc ttcttcaaga 4800 tcagttacct caccttcctc ccttctgctg atgagattta tgactgcaag gtggagcact 4860 ggggcctgga ccagcctctt ctgaaacact ggggtaagga tgagtttcat cattttttga 4920 ttctttcttg tctgtcaagt tcagaacttc ctgcctttta ctcctatatc caaaaacttg 4980 ttttccacac ttcatgggtt tcttttctgt ctctcttttt tttttttgaa agaataaagc 5040 aaaaaaagca gagatttatt gaaaatgaaa gtacactcta caggatggga gtgggcctgc 5100 cacttcatgg ttttctaatg atagacttca ctcttctccc taagctgggg gccttgagtc 5160 tttgcagagc caaccctcta ccccatccca tcccacacac atgcacatga gcaaactctg 5220 cattctgacc tcaacaactt cacttccaca gagcctgaga ttccagcccc tatgtcagag 5280 ctcacagaga ctgtggtctg cgccctgggg ttgtctgtgg gcctcgtggg cattgtggtg 5340 ggcactgtct tcatcatcca aggcctgcgt tcagttggtg cttccagaca ccaagggcca 5400 ttgtgaatcc catcctggaa gggaaggtaa gattgagact ggttacagtt gaagcggcag 5460 tatgaaagga aggaaagtgg gagggcgttg tggacatgaa tgtggttgaa agttgtaggg 5520 gaattgggaa 5530 //