Dbfetch
ID MK448288; SV 1; linear; genomic DNA; STD; HUM; 5534 BP. XX AC MK448288; XX DT 13-JUN-2019 (Rel. 141, Created) DT 13-JUN-2019 (Rel. 141, Last updated, Version 1) XX DE Homo sapiens cell line AN86 MHC class II antigen (HLA-DQA1) gene, DE HLA-DQA1*01:NEW allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5534 RA Hayward D.R.; RT "A novel HLA-DQA1*01:NEW allele as identified in AN86"; RL Unpublished. XX RN [2] RP 1-5534 RA Hayward D.R.; RT ; RL Submitted (25-JAN-2019) to the INSDC. RL Research and Development, Anthony Nolan Research Institute, The Royal Free RL Hospital, London, London NW3 2QU, UK XX DR MD5; 6fbbcb8fe722b69be8a09c77be098ee8. XX CC ##Assembly-Data-START## CC Assembly Method :: SMRT v. 5 CC Assembly Name :: HLA-DQA1*01:NEW_AN86 CC Coverage :: 5UTR to 3UTR CC Sequencing Technology :: PacBio CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5534 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="AN86" FT /db_xref="taxon:9606" FT gene <98..>5410 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:NEW" FT mRNA join(<98..179,3956..4204,4618..4899,5256..>5410) FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:NEW" FT /product="MHC class II antigen" FT CDS join(98..179,3956..4204,4618..4899,5256..5410) FT /codon_start=1 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:NEW" FT /product="MHC class II antigen" FT /db_xref="UniProtKB/TrEMBL:A0A4Y5R8N7" FT /protein_id="QCY59243.1" FT /translation="MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPS FT GQFTHEFDGDEQFYVDLEKKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKCYN FT STAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHAVTEGVSETSF FT LSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCA FT LGLSVGLVGIVVGTVFIIQGLRSVGASRHQGPL" XX SQ Sequence 5534 BP; 1600 A; 1151 C; 1243 G; 1540 T; 0 other; ggtttggttt gggtgtcttc agatttcctt gtcttgaggt cctcacaatt actctacagc 60 tcagaacacc aactgctgag gctgccttgg gaagaggatg atcctaaaca aagctctgct 120 gctgggggcc ctcgctctga ccaccgtgat gagcccctgt ggaggtgaag acattgtggg 180 tgagtgcatg agtgagggat gttctctgga gctgaaaaac agtaaattga aggaaaagag 240 ataaagcgat ttgcagagaa actgtagaga tttcctaagg gccctttcag tattaagaca 300 attaaaaatt atagctgttc ctccttcagg aaaccagagc cccaacctac tctttttgtt 360 atctatgctg ttgtgttcac taaggacgct attctgttta tattatattc agtgactaca 420 gcctggaggt ctctatgtcg ttccatcatg attgcctcaa aaattagtga ggtttccatc 480 agtggataat tttttattat taaaaattta tgaagtgtca ttctcaaatt tccctgaaca 540 acttttgaag cttttcggat gtctccggtg gtagatcttg gggtcattcc atcaattatg 600 tactctatag atatttaaaa tgttgcccgt ttctttctct cagacttact cacatttcca 660 catgggaact ggcacaggtg gggagtgggt aaaggagtcc agcaggctga atgccttcaa 720 cagtcatttt accacatggt cctcacttac tctcagctgc ctcatatgtg tcacctcaca 780 agtaatcaaa taaaatgggc atgtggctaa gttttgtaaa tagtgaaaac atgaatgtca 840 atttttttta catatttcta ttacagatat agcttcacat ttcttttctt tagcaaaata 900 agggatcatt ttattttaaa attgagaagt agaaaaaatt ggtaaaataa atcattttat 960 tctcaaatta tcaacccaaa ttacctgttc ttcacctcat ctaataaagt cctataaaaa 1020 gaaaagtggg ccagacaagg tggctcatgc ctgtaatccc agcactttgg gaggccgagg 1080 caggaggatc atttgagcct gggagcttga gaccagcctg ggcaacatag caagacctca 1140 tctctacaaa aaaagaaaaa taaaaattag ccaggcatgg tggtgtgtgc ctgtggtgcc 1200 agctactcag aaggctgccg tgggaggacc acttgagtcc atgaggcgga agctgcagtg 1260 agccatgatg gcaccactac actccagcca gggcaacaga gagagactct gtctcaaaaa 1320 gaaagaggaa agaaagcaag gaaccaagga aggaaggaag gaaggagaag gaaggaagga 1380 aaagaaaaga aaagggaagg gaggaaggaa ggaaaaaaga aagacggaaa gaaaaaggaa 1440 ggaaggaaga aaggaagcac agattaatta tttggtctct tactctcctc tgcctttgtc 1500 gtccatctct ttccacctct cttgatgcat tcctttctcc cccttccctt tcaggatcca 1560 cctctggctc cctgctcctt tatagatatg gacagtgggt ttgtaaagca aaagttgaaa 1620 agtcagatag ttaaaagggg aagtgaactg gaaggtactc taaactttca caactttatt 1680 aaccgtggct gctcccatta tgattttgtt cggcagtgga agtttcacct gcttctccag 1740 agcacttggc atctttgttc caaatttcct ttcttcagcc tcacaccaga gtgccctggt 1800 caggctcggc tcatccatta ggcactatgt gggcagtgca ggggaccctc catactgtaa 1860 agccacatga gaaggtttta actcctttta aaattagaaa aataatggaa tattagagcc 1920 taagaaaatg ttttaacttt taattcagcc tagattatat tgtctttata ccaattcagt 1980 cataaaatat aattttccat atttttatgg aggaaggggc ccatacaagc aagaatgctc 2040 ggggctcaca tgtcagaatg cagccttggt catgactgat cctggcgttt gtatggttct 2100 gctacctgtg tgcctgtccg tcttccccaa aatctgtgtg gtcctcgaat atagcaactg 2160 tcattcaata cacatgtttg agcacacagt gagctaagtt ttaaggattc aaagatgaaa 2220 agtcatgctg tcttccctgc agagggtgct cagattagtg atggaaacag tgtggggtgc 2280 aggaaagcag aaggccattg ctgagcaggg cagtggaccc agcagaggct gaaacaatac 2340 aagtgacttg gttccaggtg ggccagcagg gtgacgtcct ctagcaaaat ttggcaccca 2400 agacaagtac cagaagaaaa gaaagactgc atgtattcca catatattca tgtttgaaca 2460 aggagtcaag atttatggca aggataagga ggctttgttg gtgacctgtt aagaccaacc 2520 agggcagtca tgctggatag ggaagaaggt gagctggaag aggaacagac aaacttggac 2580 agccagatgt tgagatggag gggttggagg tcataatgtg gtcaaaacat gttgatgaga 2640 ggactcagct acaaagttgt taacttaagc agaaacctca aggatggatt ttagaatttc 2700 tccaggaagt cctaaaagat aattcctttt cagggagaaa aacaacagac cactgcaaag 2760 accagggaac atgaaaggat aatgtagttt ggcttgcttg gcagatactt ttgaaggatg 2820 ttggactgta aggctgtcga tatcctcctc acagaactta ctacagtaca ttgtatctgt 2880 tcccttacct acctgactct tccactattc agtttgttcc ttaatggtag accatgcctg 2940 attggtgttt tacacatctc cggctatgtc tgacacttgt ggatgctcag aaagtgggga 3000 aggaaggaaa gatacgatgg taaaaggctt acacatgtct tgacaagaaa gtccagttcg 3060 gctcatttgg ctggagtcgt actgcatggc tgccattctg ctctggcatc ctcagacaag 3120 cacactgccc attagaggaa aaagtgtgaa tataagtgtt gagtcagaat gctgtagaca 3180 tttagtaacc tccttcacag gaaaaaaaaa agatgggggg aatgacagaa atccaaaaac 3240 tagtagagct tccacttttc atttcagaag aaatcagttg ctctcctata aggaccatta 3300 ctattaacaa aacagagacc ttagaaggag gcattgttta tttattatat attttgtaat 3360 gttattacca atcttgttat actctttctt ataccctaca attgttagca gaaattattt 3420 taaattaata agatcctgca tgcttttcct taaaaaaaaa aaaagaaaga aagaaagatc 3480 tctgtgtaga gtgtcctatt ctgagccagt cctgagagga aaggaagtat aatcaatttg 3540 ttattaaccg atgaaagaat taagtgaaag ataaatctca ggaagcagag ggaagtaaac 3600 ctaatctctg actaagaaag ctaaatacta tgataactca ttcattcctt cttttgttca 3660 attacattat ttaatcataa gtccatgacg tgccaggcac tcaggaaata gtaaaaattg 3720 gacgtgcgat attctgccct tgtgtagcgc acactagagt gggaaagaaa gtgcactttt 3780 aactggacaa ctaccaacat gatgagggga ggaaacaggg gctggaaatg tccacggact 3840 gtgccgaaaa atgaagccca taatatttga aagtcagttt cttccatcat tttgtgtatt 3900 aaggttcttt cttcccctgt tctccgcctt cctgcttgtc atcttcactc atcagctgac 3960 catgttgcct cttgtggtgt aaacttgtac cagttttacg gtccctctgg ccagttcacc 4020 catgaatttg atggagatga gcagttctac gtggacctgg agaagaagga gactgcctgg 4080 cggtggcctg agttcagcaa atttggaggt tttgacccgc agggtgcact gagaaacatg 4140 gctgtggcaa aacacaactt gaacatcatg attaaatgct acaactctac cgctgctacc 4200 aatggtatgc gtccaccatt ctgcctctct ttacttaagc tatcccttca taccagggtt 4260 cattattttc ttcccaagag gtccccagat cttcttatgg caattgctga aattttatca 4320 tctcccatct ctaaaatcac atattcccat gtaatacaag ggtctttcca ttatgcattc 4380 agcaaatcct tctaggagag gtctcatcaa cctcctactt tattaaacat gcccacagag 4440 agaagggcac aggaataaag cagaggcaat gtgtcattgc tcccaagcag aaggtaaata 4500 agacctcttt gactatcagg tggtgaaatg ctggtaggag ggctcttcca ggatgtaatg 4560 cagaacttca gggcagagct attcacactt cacaccagtg ctgtttcctc accacagagg 4620 ttcctgaggt cacagtgttt tccaagtctc ccgtgacact gggtcagccc aacaccctca 4680 tctgtcttgt ggacaacatc tttcctcctg tggtcaacat cacatggctg agcaatgggc 4740 acgcagtcac agaaggtgtt tctgagacca gcttcctctc caagagtgat cattccttct 4800 tcaagatcag ttacctcacc ttcctccctt ctgctgatga gatttatgac tgcaaggtgg 4860 agcactgggg cctggaccag cctcttctga aacactgggg taaggatgag tttcatcatt 4920 ttttgattct ttcttgtctg tcaggttcag aacttcctgc cttttactcc tatatccaaa 4980 aacttgtttt ccacacttca tgggtttctt ttctgtctca cttttttttt tgaaagaata 5040 aagcaaaaaa agcagagatt tattgaaaat gaaagtacac tctacaggat gggagtgggc 5100 ctgccacttc atggttttct aatgatagac ttcactctcc tccctaagct gggggccttg 5160 agtctttgta gagccaaccc tgtaccccat cccatcccac acacatgcac atgagcaaac 5220 tctgcattct gacctcaaca acttcacttc cacagagcct gagattccag cccctatgtc 5280 agagctcaca gagactgtgg tctgtgccct ggggttgtct gtgggcctcg tgggcattgt 5340 ggtgggcact gtcttcatca tccaaggcct gcgttcagtt ggtgcttcca gacaccaagg 5400 gcccttgtga atcccatcct ggaagggaag gtaagattga gactggttac agttgaagcg 5460 gcagtatgaa aggaaggaaa gtgggagggc gttgtggaca tgaatgtggt ttaaagttgt 5520 aggggaattg ggaa 5534 //