Dbfetch
ID MK392194; SV 1; linear; genomic DNA; STD; HUM; 5636 BP. XX AC MK392194; XX DT 27-AUG-2019 (Rel. 141, Created) DT 27-AUG-2019 (Rel. 141, Last updated, Version 1) XX DE Homo sapiens MHC class II antigen (HLA-DQA1) gene, HLA-DQA1*05:05:01:NEW DE allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5636 RA Hayward D.R.; RT "A novel HLA-DQA1*05:05:01:NEW allele as identified in cell line MOLT-4"; RL Unpublished. XX RN [2] RP 1-5636 RA Hayward D.R.; RT ; RL Submitted (10-JAN-2019) to the INSDC. RL Research and Development, Anthony Nolan Research Institute, The Royal Free RL Hospital, London, London NW3 2QU, UK XX DR MD5; 7f37695c2b255e829131c498e019a358. XX CC ##Assembly-Data-START## CC Assembly Method :: SMRT v. 5 CC Assembly Name :: HLA-DQA1*05:05:01:NEW_MOLT4 CC Coverage :: 5UTR to 3UTR CC Sequencing Technology :: PacBio CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5636 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <98..>5515 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*05:05:01:NEW" FT mRNA join(<98..179,4000..4245,4658..4939,5361..>5515) FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*05:05:01:NEW" FT /product="MHC class II antigen" FT CDS join(98..179,4000..4245,4658..4939,5361..5515) FT /codon_start=1 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*05:05:01:NEW" FT /product="MHC class II antigen" FT /protein_id="QEG47629.1" FT /translation="MILNKALMLGTLALTTVMSPCGGEDIVADHVASYGVNLYQSYGPS FT GQYTHEFDGDEQFYVDLGRKETVWCLPVLRQFRFDPQFALTNIAVLKHNLNSLIKRSNS FT TAATNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFL FT SKSDHSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCAL FT GLSVGLVGIVVGTVFIIRGLRSVGASRHQGPL" XX SQ Sequence 5636 BP; 1646 A; 1176 C; 1233 G; 1581 T; 0 other; ggtttggttt gggtgtcttc agattgcctt gtctcgaggt cctcacaatt gctctacaac 60 tcagaacagc aactgctaag gctgccttgg gaagaggatg atcctaaaca aagctctgat 120 gctggggacc cttgccctga ccaccgtgat gagcccctgt ggaggtgaag acattgtggg 180 tgagtgtatg agtgagggat gttctctgga gctggaagag aggaaattga agcaaaagag 240 agaaagcgat ttgcagagaa attgtagaga tttcctaagg gtcccttcag tattaagaga 300 tttaaaaatt atggctgttc ctccttcagg aaaccagagt cccaacctac tctttttgtt 360 atctatgctg ttggcgttca ctaaggatgc tattctgttt atattgtatt cagtgactat 420 agcctggagg tctctatgtc attccatcat gattgcctca aaaattagtg aggtttccat 480 caatggataa ttttttatta ttaaaaattt gtgaagtatc attctcaaat ttccctgaac 540 aacttttgaa gcttttcgga tgtctcctgt agtagcgctt ggggtaaatg attccatcaa 600 ttatatactc tatagatatt aagaaagatg cccttttctt tctctcagac ttactaacat 660 ttccacgtgg gaactggcac aggtggggag tgggtaaagg agtccagcag gctgaatgcc 720 ttcaacaatc attttaccac atggtcctca cttactctca gctgcctcat atgtgtcacc 780 tcacaaataa tcaaataaaa tgggcatgta gctaagcttt gtaaatagtg aaaacatgaa 840 tgtcaatttt atttttacat atttctatta taggtatagc ttcacatttc ttttcttttg 900 caaaataagg aatcctttta ttttaaaatt gagaatttat agtagaaaaa cttggtaaat 960 taaatcattt tattctcaaa ttatcaaccc aaattacctg ttcttcaact catctaatga 1020 agtcctataa aaagaaaagt gggccagaca tggtggctca tgcctgtaat cccagcactt 1080 tgggaggccg aggcaggagg atcctttgag cccaggagtt gagaccagcc tgggcaacat 1140 agcaagacct catctctaca aaaaataaaa attagccagg tgtggtggtg catgcctgtg 1200 gtgccagcta ctcagaaggc tgcagtggga ggactgcttg agtccaggag gcggaagctg 1260 cagtgagcca tgatggcacc actacactcc agccagggca acagagagaa actctgtctc 1320 agaaagaaaa aggaaagaaa gagagaaagg aaggaaagaa agaaagaagg aaggaaggaa 1380 ggaagaaggg gaagggaagg gaaggaaggg aaggaaaggg aagggaggaa agaaggaagg 1440 aaaaaagaaa aagaaagaaa aaagaaagaa aaagaaagaa agaaagaaaa gagggaagga 1500 aagaaagaaa aaggaaggaa ggaagcacag attaattatt aatcatttgg tctctcttag 1560 tcttctctgt ctttgtcatc catctatttc cacctctctt catgcattcc tttctccctc 1620 ttccctttca ggatccatct ctgactccct gcttctttat atggacagtg gggtttgtaa 1680 aacaaaagtt gaaaaatcag atagttaaaa ggtgaagtga actggaaggt ctaaacttcc 1740 acaaccttat taaccatggc tgctcccatt ctgattttgt tcgacggtgg aagtttcacc 1800 tccttctcca gagcacttgg cttctttgtt ccaaatttcc tttcttcaac ctcacaccag 1860 agtgccctgg tcaggctcgg ctcatccatt aggcacaaca tgggcaatgc agagaaccct 1920 ccatactgta aagccacatg agaatgtttt aactcctttt aagattagaa aaaaatgaaa 1980 tttcagagcc taagaaaatg ttttaattca gcctagattg tattgtcttt ataccaattc 2040 agtcataaaa tacaattttc catattttca tggaggaagg ggcccacaaa agcaagagtg 2100 ctcagggctc acatgtcaga atgcagccct ggtcatggct gatcctggcc ttcttatgat 2160 tctgctagtg tgcctgtccg tcttccccaa aatctatgtc gtcctcaaat atagcaactg 2220 taattcaaaa cacgtttgag cacacagtaa gctaagtttt aaggattcaa agatgaaaag 2280 tcatgctgtc ttccctgcag agggtgctca gactagtgat ggaaacggta tgggatgcag 2340 gaaagcagaa ggccattgct gaccagggca gtggactcag cagaggctga aactatacaa 2400 atgacttggt tccagctggg ccagcagggt gacatcctcc agcaaaactc ggcacccaag 2460 acaagtccca gatgaaaaga aggattgctt tgtgtttgat aaggagtcaa ggtttattgc 2520 aaggataagg ctttgttggt ggcctgttaa gacaatccag ggcagtcata ctggataagg 2580 aagaaggtga gctggaagag gaacagacaa acagccagat attgaggtgg aggagctgga 2640 ggtcataacg tggtcaaaaa catgtcgatg agaggactta gctacaaagt tgttaactta 2700 agcagaaacc tcaaggatga attttaggat ttctccagga agtcctaaaa gataatttca 2760 tttcagggag aaaaacaaca aaccactgga aagaccaggg aacatgaaag gataatgtag 2820 tttggtttgc ttggcagata cttatgaagg atgttggact gtaaggctgt tgatagcctc 2880 ctcacagaac atgctacagt acattgtatc tgctccctta cctacctgac tcttccactc 2940 ttcagtttgt tccttaatgg tagaccatgc ctgattggtg ttttacacat cccctgctat 3000 gtctgacact tgtggatgct cagaaagtgg ggaaggaagg aaagatacaa cggtaaaagg 3060 cttacacgtc ttgacaggaa tgtccagttc ggctcatttg gctggagcca cattgcacgg 3120 ctgccattct gctctggcat cctcagacaa gcacactgcc cattagagga aaaagggttt 3180 aatttacctg agtcctcaag tgaatataag tgttaagtca gaacactgta gacatttagt 3240 aacctccttc agaggaaaaa aaaaggtggg gggaaatgac agaaatccaa aaactagtag 3300 agcttccact cttcatttca gaagaaatca gttgctctcc tctaaggacc attactatta 3360 acaaaacaga gaccttgaag gaggcattgt ttatttatta tatattttgt aatgttatta 3420 ccattcttgt tatactattc cttataccct acaattgtta gcagacatta ttttaaatta 3480 ataagatcct gcatgctttt ctttttttaa aaaaaagaaa gaccttctgt gtagagtgtc 3540 ctgttctgag ccagtcctga gaggaaagaa aatacaatca gtttgttatt aactgaggaa 3600 agaattaagt gaaagatgaa tcttaggaag cagaaggaag taaacctaat ctctgactaa 3660 gaaagctaaa taccataata actcattcat tccttctttt gttcaattac attatttaat 3720 cataagtccg tgatgtgcca ggcactcagg aaatagtaaa aactggacat gtgatattct 3780 gcccttgtgt agcgcacatt atagtgggaa agaaagcgca attttaaccg gacaactacc 3840 aacaataaga gcggaggaag caggggttgg aaatgtccac aggctgtgcc aaagatgaag 3900 cccgtaatat ttgaaagtca gtttctttca tcattttgtg tattaaggtt ctttcttccc 3960 ctgttctcca ccttcctgct tgtcatcttc actcatcagc tgaccacgtc gcctcttatg 4020 gtgtaaactt gtaccagtct tacggtccct ctggccagta cacccatgaa tttgatggag 4080 atgagcagtt ctacgtggac ctggggagga aggagactgt ctggtgtttg cctgttctca 4140 gacaatttag atttgacccg caatttgcac tgacaaacat cgctgtccta aaacataact 4200 tgaacagtct gattaaacgc tccaactcta ccgctgctac caatggtatg tgtcaacaat 4260 tctgcccctc tttactgatt tatcccttca taccaagttt cattatttta tttccaagag 4320 gtccccagat cttctcatgg caattgctga aattttatca tctcccatct ctaaaatcac 4380 atattcccat gtaatacaag ggtctttcca ttatccattc attaaatcct tctcggagag 4440 gtctcatcaa cctcctactt tattaaacat gcccacagag agaagggcac aggaataaag 4500 cggaggcaat gtgtcgttgc tcccaagcag aaggtaaata agacctcttt gactatcagg 4560 tggtgaaatg ctggtaggag ggctcttcca ggatgtaatg cagaagctca tggcagagct 4620 attcacactt cacatcagtg ctgtttcctc accacagagg ttcctgaggt cacagtgttt 4680 tccaagtctc ccgtgacact gggtcagccc aacatcctca tctgtcttgt ggacaacatc 4740 tttcctcctg tggtcaacat cacatggctg agcaatgggc actcagtcac agaaggtgtt 4800 tctgagacca gcttcctctc caagagtgat cattccttct tcaagatcag ttacctcacc 4860 ctcctccctt ctgctgagga gagttatgac tgcaaggtgg agcactgggg actggacaag 4920 cctcttctga aacactgggg taaggatgag ttccaccact ttttgatgct ttcttgtctg 4980 tcaagttcag aacttcctgc cttttactcc tatatcccaa aacttgtttt ccacacttca 5040 tgggtttctt tctttctttc tttctttctt tctttctttc tttctttctt tctttctttc 5100 tttctttctt tcttttttga aagaataaag caacaaaagc aaagatttat tgaaaatgaa 5160 agtacacttc acatggtggg agcgggcctg agcatagggg ctcaagagcc acttcatggg 5220 tttctaatga tagacttcac tctcctccct aagctgggga ccttgagtct ttgcagagcc 5280 aaccctccac cccatcccat cccacacaca tgcacatgag cacactctgc tttctgacct 5340 caacgacttc atatccacag agcctgagat tccagcccct atgtcagagc tcacagagac 5400 tgtggtctgc gccctggggt tgtctgtggg cctcgtgggc attgtggtgg gcactgtctt 5460 catcatccga ggcctgcgtt cagttggtgc ttccagacac caagggccct tgtgaatccc 5520 atcctggaat ggaaggtaag attgagattt gttagagctg aatccgcagt atgagaggaa 5580 ggaaagtgga ggaggctgtg gacatgaatg gttgaaagtt gtaggggaat tgggaa 5636 //