Dbfetch
ID MK392192; SV 1; linear; genomic DNA; STD; HUM; 5534 BP. XX AC MK392192; XX DT 27-AUG-2019 (Rel. 141, Created) DT 27-AUG-2019 (Rel. 141, Last updated, Version 1) XX DE Homo sapiens cell line AN63 MHC class II antigen (HLA-DQA1) gene, DE HLA-DQA1*01:NEW allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5534 RA Hayward D.R.; RT "A novel HLA-DQA1*01:NEW allele identified in AN63"; RL Unpublished. XX RN [2] RP 1-5534 RA Hayward D.R.; RT ; RL Submitted (10-JAN-2019) to the INSDC. RL Research and Development, Anthony Nolan Research Institute, The Royal Free RL Hospital, London, London NW3 2QU, UK XX DR MD5; 3cff73d62c512130f648149fff761e8e. XX CC ##Assembly-Data-START## CC Assembly Method :: SMRT v. 5 CC Assembly Name :: HLA-DQA1*01:NEW_AN63 CC Coverage :: 5UTR to 3UTR CC Sequencing Technology :: PacBio CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5534 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="AN63" FT /db_xref="taxon:9606" FT gene <98..>5410 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:NEW" FT mRNA join(<98..179,3954..4202,4616..4897,5256..>5410) FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:NEW" FT /product="MHC class II antigen" FT CDS join(98..179,3954..4202,4616..4897,5256..5410) FT /codon_start=1 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:NEW" FT /product="MHC class II antigen" FT /protein_id="QEG47627.1" FT /translation="MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPS FT GQYTHEFDGDEEFYVDLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYN FT STAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSF FT LSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCA FT LGLSVGLVGIVVGTVFIIQGLRSVGASRHQGPL" XX SQ Sequence 5534 BP; 1612 A; 1147 C; 1237 G; 1538 T; 0 other; ggtttggttt gggtgtcttc agatttcctt gtcttgaggt cctcacaatt actctacagc 60 tcagaacacc aactgctgag gctgccttgg gaagaggatg atcctaaaca aagctctgct 120 gctgggggcc ctcgctctga ccaccgtgat gagcccctgt ggaggtgaag acattgtggg 180 tgagtgcatg agtgagggat gttctctgga gctgaaaaac agtaaattga aggaaaagag 240 ataaagcgat ttgcagagaa actgtagaga tttcctaagg gccctttcag tattaagaca 300 attaaaaatt atagctgttc ctccttcagg aaaccagagc cccaacctac tctttttgtt 360 atctatgctg ttgtgttcac taaggacgct attctgttta tattatattc agtgactaca 420 gcctggaggt ctctatgtcg ttccgtcatg attgcctcaa aaattagtga ggtttccatc 480 agtggataat tttttattat taaaaattta tgaagtgtca ttctcaaatt tccctgaaca 540 acttttgaag cttttcggat atctccggtg gtagatcttg gggtcattcc atcaattatg 600 tactctatag atatttaaaa tgttgcccat ttctttctct cagacttact tacatttcca 660 catgggaact ggcacaggtg gggagtgggt aaaggagtcc agcaggctga atgccttcaa 720 caatcatttt accacatggt cctcacttac tctcagctgc ctcatatgtg tcacctcaca 780 agtaatcaaa taaaatgggc atgtggctaa gctttgtaaa tagtgaaaac atgaatgtca 840 atttttttta catatttcta ttacagatat agcttcacat ttcttttctt tagcaaaata 900 agggatcatt ttattttaaa attgagaagt agaaaaaatt ggtaaaataa atcattttat 960 tctcaaatta tcaacccaaa ttacctgttc ttcacctcat ctaataaagt cctataaaaa 1020 gaaaagtggg ccagacaagg tggctcatgc ctgtaatccc agcactttgg gaggccgagg 1080 caggaggatc atttgagcct gggagcttga gaccagcctg ggcaacatag caagacctca 1140 tctctacaaa aaaagaaaaa taaaaattag ccaggcatgg tggtgtgtgc ctgtggtgcc 1200 agctactcag aaggctgccg tgggaggacc acttgagtcc atgaggcgga agctgcagtg 1260 agccatggtg gcaccactac actccagcca gggcaacaga gagagacgct gtctcaaaaa 1320 gaaagaggaa agaaagcgag gaaggaagga aggaaggaag gagaaggaag gaaggaagga 1380 aaagaaaaga aaagggaagg gaggaaggaa ggaaaaaaga aagacagaaa gaaagaggaa 1440 ggaaagaaga aaggaagcac agataattat ttggtctctt actctcctct gcctttgtcg 1500 tccatctctt tccacctctc ttcatgcatc cctttctccc tcttcccttt caggatccat 1560 ctctgactcc ctgctccttt atagagatgg acagtgggtt tgtaaaacaa aagttgaaaa 1620 gtcagatagt taaaagggga agtgaactgg aaggtacctt aaactttcac aactttatta 1680 accgtggctg ctcccattat gattttgttc ggcagtggaa gtttcacctg cttctccaga 1740 gcacttggcg tctttgttcc aaatttcctt tcttcaacct cacaccagag tgccctggtc 1800 aggcttggct cattcattag gcacaatgtg ggcagtgcag gggaccctcc atactgtaaa 1860 gccacatgag aaggttttaa ctcgttttaa aattagaaaa ataatggaat attagagcct 1920 aagaaaatgt tttaactttt aattcagcct agattatatt gtctttatac caattcagtc 1980 ataaaatata attttccata tttttgtgga ggaagaggcc catacaagca agaatgctcg 2040 gggctcacat gtcagaatgc agccttggtc atgactgatc ctggccttcg tatggttctg 2100 ctacctgtgt gcctgcccgt cttccccaaa atctatgtgg tcctcgaata tagcaactgt 2160 cattcaacac acatgtttga gcacacagtg agctaagttt taaggattca aagatgaaaa 2220 atcatgctgt cttccctgca gagggtgctc agattagtga tggaaacagt atggggtgca 2280 ggaaagcaga aggccattgc tgagcagggc agtggaccca gcagaggctg aaacaataca 2340 agtgacttgg ttccaggtgg gccagcaggg tgacgtcctc tagcaaaatt tggcacccaa 2400 gacaagtacc agaagaaaag aaagactgca tgtattccac atatattcat gtttgaacaa 2460 ggagtcaaga tttatggcaa ggataaggag gctttgttgg tgacctgtta agaccaacca 2520 gggcagtcat gctggatagg gaagaaggtg agctggaaga ggaacagaca aacttggaca 2580 gccagatgtt gagacggagg ggttggaggt cataatgtgg tcaaaaacat gttgatgaga 2640 ggactcagct acaaagttgt taacttaagc agaaacctca aggatggatt ttagaatttc 2700 tccaggaagt cctaaaagat aattccattt cagggagaaa aacaacagac cactgcaaag 2760 accagggaac atgaaaggat aatgtagttt gtcttgcttg gcagatactt ttgaaggatg 2820 ttggactgta aggctgtcga tatcctcctc agagaactta ctacagtaca ttgtatctgt 2880 tcccttacct acctgactct tccactattc agtttgttcc ttaatggtag accatgcctg 2940 attggtgttt tacacatctc cggctatgtc tgacacttgt ggatgctcag aaagtgggga 3000 aggaaggaaa gatacgatgg taaaaggctt acacatgtct tgacaaaaaa gtccagtttg 3060 gctcatttgg ctggagtcgt actgcatggc tgccattctg ctctggcatc ctcagacaag 3120 cacactgccc attagaggaa aaagtgtgaa tataagtgtt gagtcagaat gctgtagaca 3180 tttagtaacc tccttcacag gaaaaaaaaa aaggtggggg gaatgacaga aatccaaaaa 3240 ctagtagagc ttccactttt catttcagaa gaaatcagtt gctctcctct aaggaccatt 3300 actattaaca aaacagagac cttagaagga ggcattgttt atttattata tattttgtaa 3360 tgttattacc aatcttgtta tactctttct tataccctac aattgttagc agaaattatt 3420 ttaaattaat aagatcctgc atgcttttcc tttaaaaaaa aaaaaaaaaa gaaagatctc 3480 tgtgtagagt gtcctattct gagccagtcc tgagaggaaa ggaagtataa tcaatttgtt 3540 attaaccaat gaaagaatta agtgaaagat aaatctcagg aagcagaggg aagtaaacct 3600 aatttctgac taagaaagct aaatactatg ataacttatt cattccttct tttgttcaat 3660 tacattattt aatcataagt ccatgacgtg ccaggcactc aggaaatagt aaaaattgga 3720 catgtgatat tctgcccttg tgtagcgcac actagagtgg gaaagaaagt gcacttttaa 3780 ctggacaact accaacatga agaggggagg aagcaggggc tggaaatgtc cacagactgt 3840 gccaaaaaat gaagcccata atatttgaaa gtcagtttct tccatcattt tgtgtattaa 3900 ggttctttct tcccctgttc tccgcctacc tgcttgtcat cttcactcat cagctgacca 3960 cgttgcctct tgtggtgtaa acttgtacca gttttacggt ccctctggcc agtacaccca 4020 tgaatttgat ggagatgagg agttctatgt ggacctggag aggaaggaga ctgcctggcg 4080 gtggcctgag ttcagcaaat ttggaggttt tgacccgcag ggtgcactga gaaacatggc 4140 tgtggcaaaa cacaacttga acatcatgat taaacgctac aactctaccg ctgctaccaa 4200 tggtatgcgt ccaccattct gcctctcttt acttaagcta tccctccata ccagggttca 4260 ttattttctt cccaagaggt ccccagatct tcttatggca attgctgaaa ttttatcatc 4320 tcccatctct aaaatcacat attcccatgt aatacaaggg tctttccatt atgcattcag 4380 caaatccttc taggagaggt ctcatcaacc tcctacttta ttaaacatgc ccacagagag 4440 aagggcacag gaataaagca gaggcaatgt gtcgttgctc ccaagcagaa ggtaaataag 4500 acctctttga ctatcaggtg gtgaaatgct ggtaggaggg ctcttccagg atgtaatgca 4560 gaacttcagg gcagagctat tcacacttca caccagtgct gtttcctcac cacagaggtt 4620 cctgaggtca cagtgttttc caagtctccc gtgacactgg gtcagcccaa caccctcatt 4680 tgtcttgtgg acaacatctt tcctcctgtg gtcaacatca catggctgag caatgggcag 4740 tcagtcacag aaggtgtttc tgagaccagc ttcctctcca agagtgatca ttccttcttc 4800 aagatcagtt acctcacctt cctcccttct gctgatgaga tttatgactg caaggtggag 4860 cactggggcc tggaccagcc tcttctgaaa cactggggta aggatgagtt tcatcatttt 4920 ttgattcttt cttgtctgtc aagttcagaa cttcctgcct tttactccta tatccaaaaa 4980 cttgttttcc acacttcatg ggtttctttt ctgtctctct tttttttttt tgaaagaata 5040 aagcaaaaaa agcagagatt tattgaaaat gaaagtacac tctacaggat gggagtgggc 5100 ctgccacttc atggttttct aatgatagac ttcactcttc tccctaagct gggggccttg 5160 agtctttgca gagccaaccc tctaccccat cccatcccac acacatgcac atgagcaaac 5220 tctgcattct gacctcaaca acttcacttc cacagagcct gagattccag cccctatgtc 5280 agagctcaca gagactgtgg tctgcgccct ggggttgtct gtgggcctcg tgggcattgt 5340 ggtgggcact gtcttcatca tccaaggcct gcgttcagtt ggtgcttcca gacaccaagg 5400 gccattgtga atcccatcct ggaagggaag gtaagattga gactggttac agttgaagcg 5460 gcagtatgaa aggaaggaaa gtgggagggc gttgtggaca tgaatgtggt tgaaagttgt 5520 aggggaattg ggaa 5534 //