Dbfetch
ID MK256476; SV 1; linear; genomic DNA; STD; HUM; 5587 BP. XX AC MK256476; XX DT 03-APR-2019 (Rel. 140, Created) DT 03-APR-2019 (Rel. 140, Last updated, Version 1) XX DE Homo sapiens clone ua2016tp1069 MHC class II antigen (HLA-DQA) gene, DE HLA-DQA1*02variant allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5587 RA Knutson C., Bengtsson M.; RT ; RL Submitted (04-DEC-2018) to the INSDC. RL Clinical Immunology, Immunology, Genetics Pathology, Rudbeck Laboratory, RL Uppsala SE 75185, Sweden XX DR MD5; 9ef317ae0faf42f9dc254ad3e2ee71f8. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. 2.11.0 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5587 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /clone="ua2016tp1069" FT /db_xref="taxon:9606" FT gene <269..>5491 FT /gene="HLA-DQA" FT /allele="HLA-DQA1*02variant" FT mRNA join(<269..350,4045..4290,4703..4984,5337..>5491) FT /gene="HLA-DQA" FT /allele="HLA-DQA1*02variant" FT /product="MHC class II antigen" FT CDS join(269..350,4045..4290,4703..4984,5337..5491) FT /codon_start=1 FT /gene="HLA-DQA" FT /allele="HLA-DQA1*02variant" FT /product="MHC class II antigen" FT /db_xref="GOA:A0A482LZZ7" FT /db_xref="InterPro:IPR001003" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:A0A482LZZ7" FT /protein_id="QBQ58342.1" FT /translation="MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPS FT GQFTHEFDGDEEFYVDLERKETVWKLPLFHRLRFDPQFALTNIAVLKHNLNILIKRSNS FT TAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFL FT SKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCAL FT GLSVGLVGIVVGTVLIIRGLRSVGASRHQGPL" XX SQ Sequence 5587 BP; 1614 A; 1187 C; 1199 G; 1587 T; 0 other; gtcttccctc tcttcataga acaattcctc aagtccactc tgagtagagg ctgcatcaca 60 acaaggggat tgccctgtct ccttccaggg ctcttaatag aaactcttca actagtaact 120 gagatgtcac catgggggat ttttctaatt ggccaaaacc tgacttggca gggtttggtt 180 tgggtgtctt cagatttcct tgtcttgagg tcctcacaat tactctacag ctcagaacag 240 caactgctga ggctgccttg ggaagaagat gatcctaaac aaagctctga tgctgggggc 300 cctcgccctg accaccgtga tgagcccttg tggaggtgaa gacattgtgg gtgagtgcgt 360 gagtgaggaa tgttctctgg agctgaaaaa cagtaaattg aaggaaaaga gagaaagcga 420 tttgcagaga aattgtagag atttcctaag acccctttca gtattaagag aattaaaaat 480 tatagctgtt cctccttcag gaaaccagag ccccaaccta ctctttttgt tatgtatgct 540 tttgtgttca ctaaggatgc tattctgttt atattatatt cagtgactac agcctggagg 600 tctctatgtc attccatcat gattgcctca aaaattagtg aggtttccat cagtggataa 660 ttttttatta ttaaaaatgt atgaagtgtc attctcaaat ttccctgaac aacttttgaa 720 gattttcgga tgtctcctgt agtagatctt ggggtcgttc catcaattat atactctata 780 gatattaaaa aagttgcccg tttctttctc tcagacttac tcacatttcc acatgggaac 840 tggcacaggt ggggagtagg taaaggagtc cagcaggctg aatgccttca acaatcattt 900 taccacatgg tcctcactta ctctcagctg cctcatatgt gtcacctcac aaataatcaa 960 ataaaatggg catgtagcta agctttgtaa atagtgaaaa catggatgtc aattgttttt 1020 acatatttct attacaggta tagcttcaca tttcttttct ttagcaaaat aagggatcct 1080 tttagtttaa aattgagaag tagaaaaaat tggtaaatta aatcatttta ttctcaaatt 1140 atcaacccaa attacctgtt cttcacctca tctaataaag tcctataaaa agaaaagtgg 1200 gccagacatg gtggctcatg cctgtaatcc cagcactttg ggaggccgaa gcaggaggat 1260 catttgagcc tgggagtttg agaccagcct gggcaacaca gcaagacctc atctctacca 1320 aaaaataaaa taaaaattag ccaggcatgg tagtgcatgc ctgtggtgcc agctactcag 1380 aaggctgcag tgggaggagc acttgagtcc aggaggtgga agctgcagtg agccatgatg 1440 gcaccactac actccagcca gggcaacaga gagagaccct gtctcaaaaa gaaagcggaa 1500 agaaagagag aaaggaagga aagaaggaaa gaaggaagca aggaaggaga aagggaaggg 1560 aagaaagaag aaagaaagaa agaaaacaga aggaaggaag cacagattaa ttatttggtc 1620 tcttagtctc ctctgccttt gtcgtccatc tcttcccacc tctcttcatg cattcctttc 1680 tccctcttcc ctttcaggat ccatctctga ctccctgctc ctttatagag atggacatga 1740 gtttgtaaaa caaaagttga aaagtcagat agttaaaagg ggaagtaaac tggaaggtac 1800 tctaaacttt cacaacctta ttaaccgtgg cagctcccat tctgattttg ttcagcagtg 1860 gaagtttcac cctctcctcc agagcgcttg gcttctttgt tccaaatttc ctttcttcag 1920 cctcacacca gagtgccctg gtcaggctca gctcatccat taggcacaat gtgggcagtg 1980 caggggaacc tccatactgt aaagccacat gagaatgttt taactccttt taaaattata 2040 aaaaaatgaa attgtagagc ctaagaaaat gttttaactt ttaattcagc ctatattata 2100 ttgtctttat accaattcag tcataaaata taattttcca tatttttatg gaggaaggcg 2160 tccacacaag caagagtgct tggggctcac atgtcagaac gcatccctga tcatggctga 2220 tcctgacctt cgtgtggttc tgctaactat gtgcctgtca gtcttcccca aaatctatgt 2280 ggtcctcaaa tataacaact gtcattcaat acacatgttt gagcacccag tgagctaagt 2340 tttaaggatt caaagatgaa aagtcatgct gtctcccctg cagagggtgc tcagactagt 2400 gatggaaaca gtatgggatg aaagaaagca gaaggccatt gctgagcagg cagtggactc 2460 agcagaggct gaaactatac aagtgacttg gttccagctg ggccagcagg ataaccagac 2520 gaaaagaagg attgcatata ttccatatat atttatgttt gaacaaagag tcaaggttta 2580 ttgcaaggat aaggaggctt tgttggtggc ctgttaagac catccagcgt ggtcatactg 2640 gatagggaag aaggtgagct ggaagaggga tagacaaact tggatggcca gatgttgaga 2700 tggaggagct ggaggtcata acgtggtcaa aaacatgttg atgagaggac ttagctacaa 2760 agttgttaac ttaagcagaa acctcaagga ttgattttat gatttctcca ggaagtccta 2820 aaagataatt tcatttcagg gaggaaaaca acagaccact gcaaagacca ggaacatgaa 2880 aggataatgt agtttggttt gcttggcaga tacttgtgaa agatgttgga ctgtaaggct 2940 gtcaatatcc tcctcgcaga acttactaca gtacattgta tctgctccct tacctacctg 3000 actctcccac tattcagttt gttccttaat ggtagaccat gcctgattgg tgttttacac 3060 ttcccctgct atgtctgata cttgtggatg ctcagaaagt ggggaaggaa ggaaagatac 3120 gatggtaaaa ggcttacaca tgtcttgacc agaatgttca gtttggctca tttggctgga 3180 gtcatactgc atggctgcca ttctgctctg gcatcctcag agaagcacac tgcccattag 3240 aggaaaaagg gtgaatataa atgttgagtc agaacactgc agacatttag taacctcctt 3300 cagaggaaaa aaagggtggg gggaatgaca gaaatccaaa aactagtaga gcttccactt 3360 tttcatttca gaagaaatca gttactctcc tctaaggacc attactatta acaaaacaga 3420 gaccttagaa ggaagcatta tttatttatc atatattttg taatgttatt accgttcttg 3480 ttatactctt tcttataccc taccattgtt agcagaaatt attttaaatt aataagatcc 3540 tgcatgcttt tcctttttct aaaaaaagaa agatctctgt gtagaatgtc ctgttctgag 3600 ccagtcctga gaggaaagga agtataatca atttgttatt aactgatgaa agaattaagt 3660 gaaagataaa ccttaggaag cagagggaag ttaatctatg actaagaaag ttaagtactc 3720 tgataactca ttcattcctt cttctgttca tttacattat ttaatcacaa gtccatgatg 3780 tgccaggcac tcaggaaata gtgaaaatcg gacacgcgat attctgccct tgtgtagcac 3840 acactgtagt gggaaagaaa gtgcactttt aactggacaa ctatcaacac gaagagggga 3900 ggaagcaggg gctggaaatg tccacagact ttgccaaaga caaagcccat aatatttgaa 3960 agtcagtttc ttccatcatt ttgtgtatta aggtttttta ttctcctgtt ctctgccttc 4020 ctgcttgtca tcttcactca tcagctgacc acgttgcctc ttacggtgta aacttgtacc 4080 agtcttacgg tccctctggc cagttcaccc atgaatttga tggagacgag gagttctatg 4140 tggacctgga gaggaaggag actgtctgga agttgcctct gttccacaga cttagatttg 4200 acccgcaatt tgcactgaca aacatcgctg tgctaaaaca taacttgaac atcctgatta 4260 aacgctccaa ctctaccgct gctaccaatg gtatgtgtcc accattctgc ctttctttac 4320 tgatctatcc ctttatacca agtttcatta ttttctttcc aagaggtccc cagatcttct 4380 catggcaatt gctgaaattt tatcatttct catctctaaa atcacatatc cccatgtaat 4440 acaagggtct ttccattatg cattcattaa atcattctag gagaggtctc atcaacctcc 4500 tactttatta aacatgccca cagagagaag ggcacaggag taaagcagag gcaatgtgtc 4560 attgctccca agtagaaggt aaataaggcc tctttgacca gcaggagagg aaatgctggt 4620 aggaagactc ttccaggatg taatgcagaa gctcagggca gagctattca cacttcacac 4680 cagtgctgtt tcctcaccat agaggttcct gaggtcacag tgttttccaa gtctcccgtg 4740 acactgggtc agcccaacac cctcatctgt cttgtggaca acatctttcc tcctgtggtc 4800 aacatcacct ggctgagcaa tgggcactca gtcacagaag gtgtttctga gaccagcttc 4860 ctctccaaga gtgatcattc cttcttcaag atcagttacc tcaccttcct cccttctgct 4920 gatgagattt atgactgcaa ggtggagcac tggggcctgg ataagcctct tctgaaacac 4980 tggggtaagg atgagtttca ccattttttg atgctttctt gtctgtcaag ttcagaactt 5040 cctgcctttt actctatgtc ccaaaacttg ttttccacac ttcatgagtt tcttttatct 5100 tttttttttt ttgaaagaat taagcaacaa aagcacagat ttattaaaaa agaaagtaca 5160 ctccacaggg tgggagcagg cctgccactt catgggtttc taataacaga cttcactctc 5220 ctccctgagc caggggcctt gagtctttgc agagccaacc ctccacccca tcccatccct 5280 cacacatgca catgagcaca ctctgcattc tgacctcaac aacttcactt ccacagagcc 5340 tgagattcca gcacctatgt cagagctcac agagactgtg gtctgtgccc tggggttgtc 5400 tgtgggcctc gtgggcattg tggtggggac cgtcttgatc atccgaggcc tgcgttcagt 5460 tggtgcttcc agacaccaag ggcccttgtg aatcccatcc tgaaaaagaa ggtaagtttg 5520 agatttgtta gagctgaagc tgcaggaagg aaagtgggag gaggctgtgg acatgaatgt 5580 ggttgaa 5587 //