Dbfetch

ID   MK192109; SV 1; linear; genomic DNA; STD; HUM; 2959 BP.
XX
AC   MK192109;
XX
DT   19-JUN-2019 (Rel. 141, Created)
DT   19-JUN-2019 (Rel. 141, Last updated, Version 1)
XX
DE   Homo sapiens MHC class I protein (HLA-C) gene, HLA-C*14var allele, exons 1
DE   through 6 and partial cds.
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-2959
RA   Parab S., Pitale P., Talekar S., Morjaria M., Parekh S., Khattry N.;
RT   ;
RL   Submitted (19-NOV-2018) to the INSDC.
RL   HLA Lab, Marrow Donor Registry India, SL Raheja Hospital, 2nd Floor old
RL   Wing, Mahim, Mumbai, Maharashtra 400016, India
XX
DR   MD5; 1b37c31a4affe66b757c77b290358720.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: Long Amplicon Analysis v. 5.1.0.26411
CC   Sequencing Technology :: PacBio
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2959
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   gene            1..>2959
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*14var"
FT   mRNA            join(1..367,498..767,1014..1289,1877..2152,2274..2393,
FT                   2833..>2865)
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*14var"
FT                   /product="MHC class I protein"
FT   exon            1..367
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*14var"
FT                   /number=1
FT   5'UTR           1..294
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*14var"
FT   CDS             join(295..367,498..767,1014..1289,1877..2152,2274..2393,
FT                   2833..>2865)
FT                   /codon_start=1
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*14var"
FT                   /product="MHC class I protein"
FT                   /db_xref="UniProtKB/TrEMBL:A0A4Y5RX13"
FT                   /protein_id="QCZ41280.1"
FT                   /translation="MRVMAPRTLILLLSGALALTETWACSHSMRYFSTSVSRPGRGEPR
FT                   FIAVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRN
FT                   LRGYYNQSEAGSHTLQWMFGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTA
FT                   AQITQRKWEAACEAEQRRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHE
FT                   ATLRCWALGFYPAEITLTWQWDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY
FT                   TCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGG
FT                   KGGSCSQAA"
FT   intron          368..497
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*14var"
FT                   /number=1
FT   exon            498..767
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*14var"
FT                   /number=2
FT   intron          768..1013
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*14var"
FT                   /number=2
FT   exon            1014..1289
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*14var"
FT                   /number=3
FT   intron          1290..1876
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*14var"
FT                   /number=3
FT   exon            1877..2152
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*14var"
FT                   /number=4
FT   intron          2153..2273
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*14var"
FT                   /number=4
FT   exon            2274..2393
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*14var"
FT                   /number=5
FT   intron          2394..2832
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*14var"
FT                   /number=5
FT   exon            2833..2865
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*14var"
FT                   /number=6
FT   intron          2866..>2959
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*14var"
FT                   /number=6
XX
SQ   Sequence 2959 BP; 543 A; 888 C; 937 G; 591 T; 0 other;
     aggagaagag ggatcaggac gaagtcccag gtcccgggcg gggctctcag ggtctcaggc        60
     tccaagggcc gtgtctgcac tggggaggcg ccgcgttgag gattctccac tcccctgagt       120
     ttcacttctt ctcccaacct gcgtcgggtc cttcttcctg aatactcatg acgcgtcccc       180
     aattcccact cccattgggt gtcgggttct agagaagcca atcagcgtct ccgcagtccc       240
     ggttctaaag tccccagtca cccacccgga ctcagattct ccccagacgc cgagatgcgg       300
     gtcatggcgc cccgaaccct catcctgctg ctctcgggag ccctggccct gaccgagacc       360
     tgggcctgtg agtgcggggt taggagggaa acggcctctg cggagaggag cgaggggccc       420
     gcccggcgag ggcgcaggac ccggggagcc gcgcagggag gagggtcggg cgggtctcag       480
     ccactcctcg tccccaggct cccactccat gaggtatttc tccacatccg tgtcccggcc       540
     cggccgcggg gagccccgct tcatcgcagt gggctacgtg gacgacacgc agttcgtgcg       600
     gttcgacagc gacgccgcga gtccgagagg ggagccgcgg gcgccgtggg tggagcagga       660
     ggggccggag tattgggacc gggagacaca gaagtacaag cgccaggcac agactgaccg       720
     agtgagcctg cggaacctgc gcggctacta caaccagagc gaggccggtg agtgaccccg       780
     gcccggggcg caggtcacga cccctcccca tcccccacgg acggcccggg tcgccccgag       840
     tctccccgtc tgagatccac cccgaggctg cggaacccgc ccagaccctc gaccggagag       900
     agccccagtc acctttaccc ggtttcattt tcagtttagg ccaaaatccc cgcgggttgg       960
     tcgggactgg ggcggggctc gggggacggg gctgaccacg ggggcggggc cagggtctca      1020
     caccctccag tggatgtttg gctgcgacct ggggcccgac gggcgcctcc tccgcgggta      1080
     tgaccagtcc gcctacgacg gcaaggatta catcgccctg aacgaggatc tgcgctcctg      1140
     gaccgccgcg gacacggcgg ctcagatcac ccagcgcaag tgggaggcgg cctgtgaggc      1200
     ggagcagcgg agagcctacc tggagggcac gtgcgtggag tggctccgca gatacctgga      1260
     gaacgggaag gagacgctgc agcgcgcggg taccaggggc agtggggagc cttccccatc      1320
     tcccgtagat ctcccgggat ggcctcccac gaggagggga ggaaaatggg atcagcgcta      1380
     gaatatcgcc ctcccttgaa tggagaatgg gatgagtttt cctgagtttc ctctgagggc      1440
     cccctctgct ctctaggaca attaagggat gaagtccttg aggaaatgga ggggaagaca      1500
     gtccctggaa tactgatcag gggtcccctt tgaccacttt gaccactgca gcagctgtgg      1560
     tcaggctgct gacctttctc tcaggccttg ttctctgcct cacgctcaat gtgtttgaag      1620
     gtttgattcc agcttttctg agtccttcgg cctccactca ggtcaggacc agaagtcgct      1680
     gttcctccct cagagactag aactttccaa tgaataggag attatcccag gtgcctgtgt      1740
     ccaggctggc gtctgggttc tgtgccccct tccccacccc aggtgtcctg tccattctca      1800
     ggatggtcac atgggcgctg ttggagtgtc gcaagagaga tacaaagtgt ctgaattttc      1860
     tgactcttcc cgtcagaaca cccaaagaca cacgtgaccc accatcccgt ctctgaccat      1920
     gaggccaccc tgaggtgctg ggccctgggc ttctaccctg cggagatcac actgacctgg      1980
     cagtgggatg gggaggacca aactcaggac accgagcttg tggagaccag gccagcagga      2040
     gatggaacct tccagaagtg ggcagctgtg gtggtgcctt ctggagaaga gcagagatac      2100
     acgtgccatg tgcagcacga ggggctgccg gagcccctca ccctgagatg gggtaaggag      2160
     ggggatgagg ggtgatgtgt cttctcaggg aaagcagaag tcctggagcc cttcagccgg      2220
     gtcagggctg aggcttggag gtcagggccc ctcaccttcc cctcctttcc cagagccgtc      2280
     ttcccagccc accatcccca tcgtgggcat cgttgctggc ctggctgtcc tggctgtcct      2340
     agctgtccta ggagctgtgg tggctgttgt gatgtgtagg aggaagagct caggtaggga      2400
     aggggtgagg agtggggtct gggttttctt gttccactgg gagtttcaag ccccaggtag      2460
     aagtgtgccc cacctcgtta ctggaagcac catccacaca tgggccatcc cagcctggga      2520
     ccctgtgtgc cagcacttac tctgttgtga agcacatgac aatgaaggac agatgtatca      2580
     ccttgatgat tatggtgttg gggtccttga ttccagcatt catgagtcag gggaaggtcc      2640
     ctgctaagga cagaccttag gagggcagtt gcttcaggac ccacagctgc tttccccgtg      2700
     tttcctgatc ctgccctggg tctgcagtca tagttctgga aacttctctt gggtccaaga      2760
     ctaggaggtt cccctaagat cgcatggccc tgcctcctcc ctgtcccctc acagggcatt      2820
     ttcttcccac aggtggaaaa ggagggagct gctctcaggc tgcgtgtaag tgatggcggt      2880
     gggcgtgtgg aggagctcac ccaccccata attcctcttg tcccacatct cctgcgggct      2940
     ctgaccaggt ctttttttt                                                   2959
//