Dbfetch
ID MK192109; SV 1; linear; genomic DNA; STD; HUM; 2959 BP.
XX
AC MK192109;
XX
DT 19-JUN-2019 (Rel. 141, Created)
DT 19-JUN-2019 (Rel. 141, Last updated, Version 1)
XX
DE Homo sapiens MHC class I protein (HLA-C) gene, HLA-C*14var allele, exons 1
DE through 6 and partial cds.
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-2959
RA Parab S., Pitale P., Talekar S., Morjaria M., Parekh S., Khattry N.;
RT ;
RL Submitted (19-NOV-2018) to the INSDC.
RL HLA Lab, Marrow Donor Registry India, SL Raheja Hospital, 2nd Floor old
RL Wing, Mahim, Mumbai, Maharashtra 400016, India
XX
DR MD5; 1b37c31a4affe66b757c77b290358720.
XX
CC ##Assembly-Data-START##
CC Assembly Method :: Long Amplicon Analysis v. 5.1.0.26411
CC Sequencing Technology :: PacBio
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1..2959
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT gene 1..>2959
FT /gene="HLA-C"
FT /allele="HLA-C*14var"
FT mRNA join(1..367,498..767,1014..1289,1877..2152,2274..2393,
FT 2833..>2865)
FT /gene="HLA-C"
FT /allele="HLA-C*14var"
FT /product="MHC class I protein"
FT exon 1..367
FT /gene="HLA-C"
FT /allele="HLA-C*14var"
FT /number=1
FT 5'UTR 1..294
FT /gene="HLA-C"
FT /allele="HLA-C*14var"
FT CDS join(295..367,498..767,1014..1289,1877..2152,2274..2393,
FT 2833..>2865)
FT /codon_start=1
FT /gene="HLA-C"
FT /allele="HLA-C*14var"
FT /product="MHC class I protein"
FT /db_xref="UniProtKB/TrEMBL:A0A4Y5RX13"
FT /protein_id="QCZ41280.1"
FT /translation="MRVMAPRTLILLLSGALALTETWACSHSMRYFSTSVSRPGRGEPR
FT FIAVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRN
FT LRGYYNQSEAGSHTLQWMFGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTA
FT AQITQRKWEAACEAEQRRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHE
FT ATLRCWALGFYPAEITLTWQWDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY
FT TCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGG
FT KGGSCSQAA"
FT intron 368..497
FT /gene="HLA-C"
FT /allele="HLA-C*14var"
FT /number=1
FT exon 498..767
FT /gene="HLA-C"
FT /allele="HLA-C*14var"
FT /number=2
FT intron 768..1013
FT /gene="HLA-C"
FT /allele="HLA-C*14var"
FT /number=2
FT exon 1014..1289
FT /gene="HLA-C"
FT /allele="HLA-C*14var"
FT /number=3
FT intron 1290..1876
FT /gene="HLA-C"
FT /allele="HLA-C*14var"
FT /number=3
FT exon 1877..2152
FT /gene="HLA-C"
FT /allele="HLA-C*14var"
FT /number=4
FT intron 2153..2273
FT /gene="HLA-C"
FT /allele="HLA-C*14var"
FT /number=4
FT exon 2274..2393
FT /gene="HLA-C"
FT /allele="HLA-C*14var"
FT /number=5
FT intron 2394..2832
FT /gene="HLA-C"
FT /allele="HLA-C*14var"
FT /number=5
FT exon 2833..2865
FT /gene="HLA-C"
FT /allele="HLA-C*14var"
FT /number=6
FT intron 2866..>2959
FT /gene="HLA-C"
FT /allele="HLA-C*14var"
FT /number=6
XX
SQ Sequence 2959 BP; 543 A; 888 C; 937 G; 591 T; 0 other;
aggagaagag ggatcaggac gaagtcccag gtcccgggcg gggctctcag ggtctcaggc 60
tccaagggcc gtgtctgcac tggggaggcg ccgcgttgag gattctccac tcccctgagt 120
ttcacttctt ctcccaacct gcgtcgggtc cttcttcctg aatactcatg acgcgtcccc 180
aattcccact cccattgggt gtcgggttct agagaagcca atcagcgtct ccgcagtccc 240
ggttctaaag tccccagtca cccacccgga ctcagattct ccccagacgc cgagatgcgg 300
gtcatggcgc cccgaaccct catcctgctg ctctcgggag ccctggccct gaccgagacc 360
tgggcctgtg agtgcggggt taggagggaa acggcctctg cggagaggag cgaggggccc 420
gcccggcgag ggcgcaggac ccggggagcc gcgcagggag gagggtcggg cgggtctcag 480
ccactcctcg tccccaggct cccactccat gaggtatttc tccacatccg tgtcccggcc 540
cggccgcggg gagccccgct tcatcgcagt gggctacgtg gacgacacgc agttcgtgcg 600
gttcgacagc gacgccgcga gtccgagagg ggagccgcgg gcgccgtggg tggagcagga 660
ggggccggag tattgggacc gggagacaca gaagtacaag cgccaggcac agactgaccg 720
agtgagcctg cggaacctgc gcggctacta caaccagagc gaggccggtg agtgaccccg 780
gcccggggcg caggtcacga cccctcccca tcccccacgg acggcccggg tcgccccgag 840
tctccccgtc tgagatccac cccgaggctg cggaacccgc ccagaccctc gaccggagag 900
agccccagtc acctttaccc ggtttcattt tcagtttagg ccaaaatccc cgcgggttgg 960
tcgggactgg ggcggggctc gggggacggg gctgaccacg ggggcggggc cagggtctca 1020
caccctccag tggatgtttg gctgcgacct ggggcccgac gggcgcctcc tccgcgggta 1080
tgaccagtcc gcctacgacg gcaaggatta catcgccctg aacgaggatc tgcgctcctg 1140
gaccgccgcg gacacggcgg ctcagatcac ccagcgcaag tgggaggcgg cctgtgaggc 1200
ggagcagcgg agagcctacc tggagggcac gtgcgtggag tggctccgca gatacctgga 1260
gaacgggaag gagacgctgc agcgcgcggg taccaggggc agtggggagc cttccccatc 1320
tcccgtagat ctcccgggat ggcctcccac gaggagggga ggaaaatggg atcagcgcta 1380
gaatatcgcc ctcccttgaa tggagaatgg gatgagtttt cctgagtttc ctctgagggc 1440
cccctctgct ctctaggaca attaagggat gaagtccttg aggaaatgga ggggaagaca 1500
gtccctggaa tactgatcag gggtcccctt tgaccacttt gaccactgca gcagctgtgg 1560
tcaggctgct gacctttctc tcaggccttg ttctctgcct cacgctcaat gtgtttgaag 1620
gtttgattcc agcttttctg agtccttcgg cctccactca ggtcaggacc agaagtcgct 1680
gttcctccct cagagactag aactttccaa tgaataggag attatcccag gtgcctgtgt 1740
ccaggctggc gtctgggttc tgtgccccct tccccacccc aggtgtcctg tccattctca 1800
ggatggtcac atgggcgctg ttggagtgtc gcaagagaga tacaaagtgt ctgaattttc 1860
tgactcttcc cgtcagaaca cccaaagaca cacgtgaccc accatcccgt ctctgaccat 1920
gaggccaccc tgaggtgctg ggccctgggc ttctaccctg cggagatcac actgacctgg 1980
cagtgggatg gggaggacca aactcaggac accgagcttg tggagaccag gccagcagga 2040
gatggaacct tccagaagtg ggcagctgtg gtggtgcctt ctggagaaga gcagagatac 2100
acgtgccatg tgcagcacga ggggctgccg gagcccctca ccctgagatg gggtaaggag 2160
ggggatgagg ggtgatgtgt cttctcaggg aaagcagaag tcctggagcc cttcagccgg 2220
gtcagggctg aggcttggag gtcagggccc ctcaccttcc cctcctttcc cagagccgtc 2280
ttcccagccc accatcccca tcgtgggcat cgttgctggc ctggctgtcc tggctgtcct 2340
agctgtccta ggagctgtgg tggctgttgt gatgtgtagg aggaagagct caggtaggga 2400
aggggtgagg agtggggtct gggttttctt gttccactgg gagtttcaag ccccaggtag 2460
aagtgtgccc cacctcgtta ctggaagcac catccacaca tgggccatcc cagcctggga 2520
ccctgtgtgc cagcacttac tctgttgtga agcacatgac aatgaaggac agatgtatca 2580
ccttgatgat tatggtgttg gggtccttga ttccagcatt catgagtcag gggaaggtcc 2640
ctgctaagga cagaccttag gagggcagtt gcttcaggac ccacagctgc tttccccgtg 2700
tttcctgatc ctgccctggg tctgcagtca tagttctgga aacttctctt gggtccaaga 2760
ctaggaggtt cccctaagat cgcatggccc tgcctcctcc ctgtcccctc acagggcatt 2820
ttcttcccac aggtggaaaa ggagggagct gctctcaggc tgcgtgtaag tgatggcggt 2880
gggcgtgtgg aggagctcac ccaccccata attcctcttg tcccacatct cctgcgggct 2940
ctgaccaggt ctttttttt 2959
//