Dbfetch

ID   MH892062; SV 1; linear; genomic DNA; STD; HUM; 5733 BP.
XX
AC   MH892062;
XX
DT   01-MAY-2019 (Rel. 140, Created)
DT   01-MAY-2019 (Rel. 140, Last updated, Version 1)
XX
DE   Homo sapiens isolate AN87 MHC class II antigen (HLA-DPA1) gene,
DE   HLA-DPA1*01:03:01:NEW allele, complete cds.
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-5733
RA   Hayward D.R.;
RT   "A novel DPA1*01:03:01-like allele that differs by 110delC and 4149G>C as
RT   identified in AN87";
RL   Unpublished.
XX
RN   [2]
RP   1-5733
RA   Hayward D.R.;
RT   ;
RL   Submitted (12-SEP-2018) to the INSDC.
RL   Research and Development, Anthony Nolan Research Institute, The Royal Free
RL   Hospital, London NW3 2QU, UK
XX
DR   MD5; 1d0bde65e7397cde7450be08e594898c.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: SMRT v. 5
CC   Assembly Name         :: AN87_HLA-DPA1*01:03:01:NEW
CC   Sequencing Technology :: PacBio
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..5733
FT                   /organism="Homo sapiens"
FT                   /isolate="AN87"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   gene            <297..>5216
FT                   /gene="HLA-DPA1"
FT                   /allele="HLA-DPA1*01:03:01:NEW"
FT   mRNA            join(<297..396,3980..4225,4566..4847,5062..>5216)
FT                   /gene="HLA-DPA1"
FT                   /allele="HLA-DPA1*01:03:01:NEW"
FT                   /product="MHC class II antigen"
FT   CDS             join(297..396,3980..4225,4566..4847,5062..5216)
FT                   /codon_start=1
FT                   /gene="HLA-DPA1"
FT                   /allele="HLA-DPA1*01:03:01:NEW"
FT                   /product="MHC class II antigen"
FT                   /note="similar to HLA-DPA1*01:03;01:01 allele; 110delC,
FT                   4149G>C"
FT                   /db_xref="GOA:X5CKE2"
FT                   /db_xref="InterPro:IPR001003"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR014745"
FT                   /db_xref="InterPro:IPR036179"
FT                   /db_xref="UniProtKB/TrEMBL:X5CKE2"
FT                   /protein_id="QCF28410.1"
FT                   /translation="MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQ
FT                   THRPTGEFMFEFDEDEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTL
FT                   IQRSNHTQATNDPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGV
FT                   AESLFLPRTDYSFHKFHYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTE
FT                   TVLCALGLVLGLVGIIVGTVLIIKSLRSGHDPRAQGTL"
XX
SQ   Sequence 5733 BP; 1502 A; 1376 C; 1102 G; 1753 T; 0 other;
     tttttacatc tctttctcta actctgaaaa tgaactgtga actggagctc tcttgaccac        60
     gctggtacct aaaattctcc catctcttcc ccagcacctt ccagcgtcct ctttacccag       120
     caacagagaa tgtcagctct atgatttctc tgataggtga atcccagcca tgctgattcc       180
     tctccaccca tttccagtgc tagaggccca cagtttcagt ctcatctgcc tccactcggc       240
     ctcagttcct catcactgtt cctgtgctca cagtcatcaa ttatagaccc cacaacatgc       300
     gccctgaaga cagaatgttc catatcagag ctgtgatctt gagagccctc tccttggctt       360
     tcctgctgag tctccgagga gctggggcca tcaagggtga gtgctaggag gacgcaggag       420
     cgtcggggtg agtgatgggg tggttcacat caattgctgc ttcagggatc acagatttta       480
     ggggctcatt gatctatctg gtcctcatag tctatgttcc ctctggccct cataataata       540
     acagcaataa cagccagaat ttatgagact cctgcatagt ttctttcccc atttacatct       600
     cacaggaatc ttcaatgaag ataatattcc attcatttag aaattattcc ttttatttag       660
     aaattatttt gaaaaaactg aagctcaaaa agatgaataa gttttccaag gttacacagc       720
     agatcaacga gccaagtttg aagtccagac ccagctctga gggtcataca ctgccttccc       780
     cagattcctg cacacagtga cctactatca gggccctcct atctctctgg gatccccagc       840
     ctctatcttt tgtggctgct ttacaggaac tccgagctat ggactctgca ttaggagacg       900
     aagtgcaaag agtgtttctg tatcctccct ctcttctagg accctagggc tcttcctggg       960
     tctttgtggg tggtcacaag ctttcctctc tcaagacagc agggttgcat ggtcttgata      1020
     gccttgtgat tcgggttctg agagattcag gactgcaagg gaggcctaga cttttgatag      1080
     ctgcaaggac tcagccagag atggaccgta gtgaatgctc ctttttcctg tagctgaaat      1140
     cagggagaat gacatcaagc ctgtgcatga tgctgtcatt ccaaaatcta gtgatgggga      1200
     aggttagaat ccataacgta caagatgcac actggcttca gacagtttta tttaagatgt      1260
     gtagaataaa gaggaggtca ggctgggtag aaccagaagt atctattgcc ctgttcgcgg      1320
     tcacctgagt tatttctaat gttatgttat aataaacacc acaataggct tctcttcata      1380
     gatgcaaata ctttttagta ttcttggtag aaattcctaa tgagctcagc tgtctcttca      1440
     gggcttccct gcccagtctc ttaacattta aacatgtcat ttaccttaaa aacataagtg      1500
     caaaccaact gataaaaaac aaccttgcct tcagtctgca tcctgtccca gagacacttt      1560
     ctttgtgtcc tcacacgtgg agctaagctt ctgacttgtc tctggtacat ccctgaggat      1620
     cctctcatct tggccatcag gaacctctac agaaggtcaa attcagtggg ttcttctcag      1680
     tgcctctgac ttgagttact aataacattt gcactataat ccacttcttt ctgatgaact      1740
     accctgtcct tatttttctc ctgtttacct ggatcctcct tatcatcttt taaaccacct      1800
     cttaactatc atgttctctc attataccct gagatctcgg caattctgat ttttggcact      1860
     cttcctggaa aatcttattt aacctgcacc tgccactaat gactctcagt tctatggcct      1920
     aaattcctct cctgagacca cccataatcc acaaatatct atgtattatt tctccttaga      1980
     tgactttcag gtcttctaag tgcaatagcc ccacagtgaa ctcagtatct tctcccggtc      2040
     aggctgtctt ccctgagaga agtggctttt gccctgtttt ctgaatgcct acattgaagc      2100
     catctgttcc ccaggaagcc ttccctgatg tgctgtttgg tcgcatcttg tgtataccta      2160
     cgtatctgca cttatccttc tgaacctgct gttgtcctgt cacttgtgtt tccttctgtg      2220
     acttatacgc gtctgcagaa caggacgtat gtattatttt tatttgggta tttagcatct      2280
     aacagtgttt gacatatagt agtcttttaa tacatatttt tgtctgaatg gaaatgatat      2340
     tttgaagaaa aataatctgt tccatagctg gctgatcttt ggactgcaga acttgtgaaa      2400
     gtgtttttta aaaagcattt taaaaagtac aagggacatt catgtattaa gaagatgagt      2460
     ttccaataac tgctagagga ctttgtgtct ttttatttta ccctcttttt cctgatgagt      2520
     cctttgagtc ctttaaactg aggagcaagc taagtttcct agtgaaatac ctataggatt      2580
     tgttttgttt agtttcaaat accactcttt gcttggccac ttactgtgtc agggagtcat      2640
     tctcagtgaa aaataagaca caggtcatac cctctagaca cttacaatta cagtggcaag      2700
     gagtcattct cctgtcactg taagtggcca agcacagact gggtccccac atgtcagggc      2760
     tgaaaactca cagggaaatc tgtgagttgg gaggtgagag cagaagagtc ccgtagttcc      2820
     ttctcactct gatgcattta tcattctaaa cccagacttt cacatacaca ttcatcgttt      2880
     tctttcatga taatagttgc ttttatcctc ttatctttgc taattcttac aaactaataa      2940
     agactaagaa acaaaataaa ttaaatccta caggtgttcc aaactcagca ataatttcta      3000
     gttggcctct aaaacaaaaa tcaaaatata aatgtaagaa aagtttagaa tgcttagtac      3060
     ctgtgtgatg aaataatctg tacactaaac ccccaagtca tgagtttacc tatacaacaa      3120
     acctgcacat gtactcctga acataaaata aatgttgaaa tatttttaaa aaggaaacaa      3180
     aagtttggaa caaatgccaa aataactgta ctgtactttt gaatttatat gccccaaatg      3240
     aaaaatatta tcaacaaagc tatacattct acagtttcat gttcataaac taagacagaa      3300
     actttaaaac tgtcaagagc cctaaaattt gaaggatatt ttcttcttcc tctcaatttt      3360
     gtattttttt ctaccttttc tataataaga aaaagaaaat gtccattccc ccacccccat      3420
     gactctaaaa acaattttac atctgtgtca tagaaaaatt aagatcttaa tgggagagaa      3480
     aacctctcta ctagttccgc cagtagccgt atgaccttag caagttatta atatgtaact      3540
     tccctgcatt tccttacctg taaaatgtat gatatgtatt tgcttcatag ggttattgtg      3600
     acaattcagc gactgaaata tgtaaagtat ttagaaggat gcctggcaca agtaagtgct      3660
     caacaaatgt tagctgtcat tgttactatt actattgtgt agggtcagga tgcccagact      3720
     ttcaaagacc aggaagcagc ttgacttatc agtgataaac ttttcatttt gttctttgct      3780
     cctttctttt tataactgct catctgctct gtattatttc ctttatggtg ttgctccttc      3840
     ttcttcccca tatgtccttc ctttgacctc ttaccttctt cctttttata ttcataagtc      3900
     tttattcatt ctctagcttt gaccacttgc atattcaaac tgacattttg tcgtgttttt      3960
     ctctactgtc tttatgcagc ggaccatgtg tcaacttatg ccgcgtttgt acagacgcat      4020
     agaccaacag gggagtttat gtttgaattt gatgaagatg agatgttcta tgtggatctg      4080
     gacaagaagg agaccgtctg gcatctggag gagtttggcc aagccttttc ctttgaggct      4140
     cagggcgggc tggctaacat tgctatattg aacaacaact tgaatacctt gatccagcgt      4200
     tccaaccaca ctcaggccac caacggtacg ccctatcttt gcctcttcct ctgtagccca      4260
     actggaaggg atgagagggc ctctctgcca ccctcagact aggaagccta agtgccccct      4320
     gctgtgtgat cctcttcccc tagtggccat gggctgatcc cactacagca agggcttgca      4380
     tcctctcttc tcaggagaga gaaaggtgag cagagtgagg ctggtcagtg gtgtgatacc      4440
     cctctctgtg attcagagct gccataaaat ctaaggctga ggtagaggac caccctcccc      4500
     taagaggtgg agcctttgtg attcatccca gaagaggggc ctaacctggt gctgtctcct      4560
     tccagatccc cctgaggtga ccgtgtttcc caaggagcct gtggagctgg gccagcccaa      4620
     caccctcatc tgccacattg acaagttctt cccaccagtg ctcaacgtca cgtggctgtg      4680
     caacggggag ctggtcactg agggtgtcgc tgagagcctc ttcctgccca gaacagatta      4740
     cagcttccac aagttccatt acctgacctt tgtgccctca gcagaggact tctatgactg      4800
     cagggtggag cactggggct tggaccagcc gctcctcaag cactggggta tgcaactgct      4860
     tttctctcca taatctcctg gcatcctcta ttccaaagac ctggtgtcct ctgcaccagc      4920
     tttccgcact ggctgggtct cagtcctctc ctcgtcctaa catccaatta actggtccat      4980
     aaccttcaat tcccacaacc atcccaggcc atcaccaccc tcactgcacc tcctgaccct      5040
     atctcttcat tcttccccca gaggcccaag agccaatcca gatgcctgag acaacggaga      5100
     ctgtgctctg tgccctgggc ctggtgctgg gcctagtcgg catcatcgtg ggcaccgtcc      5160
     tcatcataaa gtctctgcgt tctggccatg acccccgggc ccaggggacc ctgtgaaata      5220
     ctgtaaaggt gggaatgtaa agaggaggcc ctaggatttg tagaatgtaa ggaagggagg      5280
     aaaaattcaa tctgataagt gttcattgat cttctaatgg gttaaaagca ttcagccaca      5340
     taacaacaac aacaccgata actaactgag tagttaatat ggtcaggcgc tattctgagg      5400
     atttacattt attaactcac tttattctca cacatagtct ttgaggtagg tactattatt      5460
     ttcactattt cacatgagag atacttacat ctttttacat acacagagac tttaagcact      5520
     ttgatcaagt tcccacagct atgaagtagt agggctagct tccaatccag aaagtctgga      5580
     tccaagactg tttatccact gtcctattca ccctattttg tgaaggaaaa gaccaagttc      5640
     aaattctcca gagtccattg ccaaataatg gagtcagatc tatatttcta tacataatta      5700
     caacacagtg tggtgggtgc ctgtaactac tta                                   5733
//