Dbfetch
ID MH892062; SV 1; linear; genomic DNA; STD; HUM; 5733 BP.
XX
AC MH892062;
XX
DT 01-MAY-2019 (Rel. 140, Created)
DT 01-MAY-2019 (Rel. 140, Last updated, Version 1)
XX
DE Homo sapiens isolate AN87 MHC class II antigen (HLA-DPA1) gene,
DE HLA-DPA1*01:03:01:NEW allele, complete cds.
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-5733
RA Hayward D.R.;
RT "A novel DPA1*01:03:01-like allele that differs by 110delC and 4149G>C as
RT identified in AN87";
RL Unpublished.
XX
RN [2]
RP 1-5733
RA Hayward D.R.;
RT ;
RL Submitted (12-SEP-2018) to the INSDC.
RL Research and Development, Anthony Nolan Research Institute, The Royal Free
RL Hospital, London NW3 2QU, UK
XX
DR MD5; 1d0bde65e7397cde7450be08e594898c.
XX
CC ##Assembly-Data-START##
CC Assembly Method :: SMRT v. 5
CC Assembly Name :: AN87_HLA-DPA1*01:03:01:NEW
CC Sequencing Technology :: PacBio
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1..5733
FT /organism="Homo sapiens"
FT /isolate="AN87"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT gene <297..>5216
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*01:03:01:NEW"
FT mRNA join(<297..396,3980..4225,4566..4847,5062..>5216)
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*01:03:01:NEW"
FT /product="MHC class II antigen"
FT CDS join(297..396,3980..4225,4566..4847,5062..5216)
FT /codon_start=1
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*01:03:01:NEW"
FT /product="MHC class II antigen"
FT /note="similar to HLA-DPA1*01:03;01:01 allele; 110delC,
FT 4149G>C"
FT /db_xref="GOA:X5CKE2"
FT /db_xref="InterPro:IPR001003"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR014745"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="UniProtKB/TrEMBL:X5CKE2"
FT /protein_id="QCF28410.1"
FT /translation="MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQ
FT THRPTGEFMFEFDEDEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTL
FT IQRSNHTQATNDPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGV
FT AESLFLPRTDYSFHKFHYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTE
FT TVLCALGLVLGLVGIIVGTVLIIKSLRSGHDPRAQGTL"
XX
SQ Sequence 5733 BP; 1502 A; 1376 C; 1102 G; 1753 T; 0 other;
tttttacatc tctttctcta actctgaaaa tgaactgtga actggagctc tcttgaccac 60
gctggtacct aaaattctcc catctcttcc ccagcacctt ccagcgtcct ctttacccag 120
caacagagaa tgtcagctct atgatttctc tgataggtga atcccagcca tgctgattcc 180
tctccaccca tttccagtgc tagaggccca cagtttcagt ctcatctgcc tccactcggc 240
ctcagttcct catcactgtt cctgtgctca cagtcatcaa ttatagaccc cacaacatgc 300
gccctgaaga cagaatgttc catatcagag ctgtgatctt gagagccctc tccttggctt 360
tcctgctgag tctccgagga gctggggcca tcaagggtga gtgctaggag gacgcaggag 420
cgtcggggtg agtgatgggg tggttcacat caattgctgc ttcagggatc acagatttta 480
ggggctcatt gatctatctg gtcctcatag tctatgttcc ctctggccct cataataata 540
acagcaataa cagccagaat ttatgagact cctgcatagt ttctttcccc atttacatct 600
cacaggaatc ttcaatgaag ataatattcc attcatttag aaattattcc ttttatttag 660
aaattatttt gaaaaaactg aagctcaaaa agatgaataa gttttccaag gttacacagc 720
agatcaacga gccaagtttg aagtccagac ccagctctga gggtcataca ctgccttccc 780
cagattcctg cacacagtga cctactatca gggccctcct atctctctgg gatccccagc 840
ctctatcttt tgtggctgct ttacaggaac tccgagctat ggactctgca ttaggagacg 900
aagtgcaaag agtgtttctg tatcctccct ctcttctagg accctagggc tcttcctggg 960
tctttgtggg tggtcacaag ctttcctctc tcaagacagc agggttgcat ggtcttgata 1020
gccttgtgat tcgggttctg agagattcag gactgcaagg gaggcctaga cttttgatag 1080
ctgcaaggac tcagccagag atggaccgta gtgaatgctc ctttttcctg tagctgaaat 1140
cagggagaat gacatcaagc ctgtgcatga tgctgtcatt ccaaaatcta gtgatgggga 1200
aggttagaat ccataacgta caagatgcac actggcttca gacagtttta tttaagatgt 1260
gtagaataaa gaggaggtca ggctgggtag aaccagaagt atctattgcc ctgttcgcgg 1320
tcacctgagt tatttctaat gttatgttat aataaacacc acaataggct tctcttcata 1380
gatgcaaata ctttttagta ttcttggtag aaattcctaa tgagctcagc tgtctcttca 1440
gggcttccct gcccagtctc ttaacattta aacatgtcat ttaccttaaa aacataagtg 1500
caaaccaact gataaaaaac aaccttgcct tcagtctgca tcctgtccca gagacacttt 1560
ctttgtgtcc tcacacgtgg agctaagctt ctgacttgtc tctggtacat ccctgaggat 1620
cctctcatct tggccatcag gaacctctac agaaggtcaa attcagtggg ttcttctcag 1680
tgcctctgac ttgagttact aataacattt gcactataat ccacttcttt ctgatgaact 1740
accctgtcct tatttttctc ctgtttacct ggatcctcct tatcatcttt taaaccacct 1800
cttaactatc atgttctctc attataccct gagatctcgg caattctgat ttttggcact 1860
cttcctggaa aatcttattt aacctgcacc tgccactaat gactctcagt tctatggcct 1920
aaattcctct cctgagacca cccataatcc acaaatatct atgtattatt tctccttaga 1980
tgactttcag gtcttctaag tgcaatagcc ccacagtgaa ctcagtatct tctcccggtc 2040
aggctgtctt ccctgagaga agtggctttt gccctgtttt ctgaatgcct acattgaagc 2100
catctgttcc ccaggaagcc ttccctgatg tgctgtttgg tcgcatcttg tgtataccta 2160
cgtatctgca cttatccttc tgaacctgct gttgtcctgt cacttgtgtt tccttctgtg 2220
acttatacgc gtctgcagaa caggacgtat gtattatttt tatttgggta tttagcatct 2280
aacagtgttt gacatatagt agtcttttaa tacatatttt tgtctgaatg gaaatgatat 2340
tttgaagaaa aataatctgt tccatagctg gctgatcttt ggactgcaga acttgtgaaa 2400
gtgtttttta aaaagcattt taaaaagtac aagggacatt catgtattaa gaagatgagt 2460
ttccaataac tgctagagga ctttgtgtct ttttatttta ccctcttttt cctgatgagt 2520
cctttgagtc ctttaaactg aggagcaagc taagtttcct agtgaaatac ctataggatt 2580
tgttttgttt agtttcaaat accactcttt gcttggccac ttactgtgtc agggagtcat 2640
tctcagtgaa aaataagaca caggtcatac cctctagaca cttacaatta cagtggcaag 2700
gagtcattct cctgtcactg taagtggcca agcacagact gggtccccac atgtcagggc 2760
tgaaaactca cagggaaatc tgtgagttgg gaggtgagag cagaagagtc ccgtagttcc 2820
ttctcactct gatgcattta tcattctaaa cccagacttt cacatacaca ttcatcgttt 2880
tctttcatga taatagttgc ttttatcctc ttatctttgc taattcttac aaactaataa 2940
agactaagaa acaaaataaa ttaaatccta caggtgttcc aaactcagca ataatttcta 3000
gttggcctct aaaacaaaaa tcaaaatata aatgtaagaa aagtttagaa tgcttagtac 3060
ctgtgtgatg aaataatctg tacactaaac ccccaagtca tgagtttacc tatacaacaa 3120
acctgcacat gtactcctga acataaaata aatgttgaaa tatttttaaa aaggaaacaa 3180
aagtttggaa caaatgccaa aataactgta ctgtactttt gaatttatat gccccaaatg 3240
aaaaatatta tcaacaaagc tatacattct acagtttcat gttcataaac taagacagaa 3300
actttaaaac tgtcaagagc cctaaaattt gaaggatatt ttcttcttcc tctcaatttt 3360
gtattttttt ctaccttttc tataataaga aaaagaaaat gtccattccc ccacccccat 3420
gactctaaaa acaattttac atctgtgtca tagaaaaatt aagatcttaa tgggagagaa 3480
aacctctcta ctagttccgc cagtagccgt atgaccttag caagttatta atatgtaact 3540
tccctgcatt tccttacctg taaaatgtat gatatgtatt tgcttcatag ggttattgtg 3600
acaattcagc gactgaaata tgtaaagtat ttagaaggat gcctggcaca agtaagtgct 3660
caacaaatgt tagctgtcat tgttactatt actattgtgt agggtcagga tgcccagact 3720
ttcaaagacc aggaagcagc ttgacttatc agtgataaac ttttcatttt gttctttgct 3780
cctttctttt tataactgct catctgctct gtattatttc ctttatggtg ttgctccttc 3840
ttcttcccca tatgtccttc ctttgacctc ttaccttctt cctttttata ttcataagtc 3900
tttattcatt ctctagcttt gaccacttgc atattcaaac tgacattttg tcgtgttttt 3960
ctctactgtc tttatgcagc ggaccatgtg tcaacttatg ccgcgtttgt acagacgcat 4020
agaccaacag gggagtttat gtttgaattt gatgaagatg agatgttcta tgtggatctg 4080
gacaagaagg agaccgtctg gcatctggag gagtttggcc aagccttttc ctttgaggct 4140
cagggcgggc tggctaacat tgctatattg aacaacaact tgaatacctt gatccagcgt 4200
tccaaccaca ctcaggccac caacggtacg ccctatcttt gcctcttcct ctgtagccca 4260
actggaaggg atgagagggc ctctctgcca ccctcagact aggaagccta agtgccccct 4320
gctgtgtgat cctcttcccc tagtggccat gggctgatcc cactacagca agggcttgca 4380
tcctctcttc tcaggagaga gaaaggtgag cagagtgagg ctggtcagtg gtgtgatacc 4440
cctctctgtg attcagagct gccataaaat ctaaggctga ggtagaggac caccctcccc 4500
taagaggtgg agcctttgtg attcatccca gaagaggggc ctaacctggt gctgtctcct 4560
tccagatccc cctgaggtga ccgtgtttcc caaggagcct gtggagctgg gccagcccaa 4620
caccctcatc tgccacattg acaagttctt cccaccagtg ctcaacgtca cgtggctgtg 4680
caacggggag ctggtcactg agggtgtcgc tgagagcctc ttcctgccca gaacagatta 4740
cagcttccac aagttccatt acctgacctt tgtgccctca gcagaggact tctatgactg 4800
cagggtggag cactggggct tggaccagcc gctcctcaag cactggggta tgcaactgct 4860
tttctctcca taatctcctg gcatcctcta ttccaaagac ctggtgtcct ctgcaccagc 4920
tttccgcact ggctgggtct cagtcctctc ctcgtcctaa catccaatta actggtccat 4980
aaccttcaat tcccacaacc atcccaggcc atcaccaccc tcactgcacc tcctgaccct 5040
atctcttcat tcttccccca gaggcccaag agccaatcca gatgcctgag acaacggaga 5100
ctgtgctctg tgccctgggc ctggtgctgg gcctagtcgg catcatcgtg ggcaccgtcc 5160
tcatcataaa gtctctgcgt tctggccatg acccccgggc ccaggggacc ctgtgaaata 5220
ctgtaaaggt gggaatgtaa agaggaggcc ctaggatttg tagaatgtaa ggaagggagg 5280
aaaaattcaa tctgataagt gttcattgat cttctaatgg gttaaaagca ttcagccaca 5340
taacaacaac aacaccgata actaactgag tagttaatat ggtcaggcgc tattctgagg 5400
atttacattt attaactcac tttattctca cacatagtct ttgaggtagg tactattatt 5460
ttcactattt cacatgagag atacttacat ctttttacat acacagagac tttaagcact 5520
ttgatcaagt tcccacagct atgaagtagt agggctagct tccaatccag aaagtctgga 5580
tccaagactg tttatccact gtcctattca ccctattttg tgaaggaaaa gaccaagttc 5640
aaattctcca gagtccattg ccaaataatg gagtcagatc tatatttcta tacataatta 5700
caacacagtg tggtgggtgc ctgtaactac tta 5733
//