Dbfetch
ID MH753030; SV 1; linear; genomic DNA; STD; HUM; 5718 BP. XX AC MH753030; XX DT 04-APR-2019 (Rel. 140, Created) DT 04-APR-2019 (Rel. 140, Last updated, Version 1) XX DE Homo sapiens isolate AN70 MHC class II antigen (HLA-DPA1) gene, DE HLA-DPA1*02:06 allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5718 RA Hayward D.R.; RT "Extension of HLA-DPA1*02:06 as identified in AN70"; RL Unpublished. XX RN [2] RP 1-5718 RA Hayward D.R.; RT ; RL Submitted (15-AUG-2018) to the INSDC. RL Research and Development, Anthony Nolan Research Institute, The Royal Free RL Hospital, London, London NW3 2QU, UK XX DR MD5; 94cff60b4e806fbb5bfb4f87c5ef204e. XX CC ##Assembly-Data-START## CC Assembly Method :: SMRT v. 5 CC Assembly Name :: HLA-DPA1*02:06 CC Coverage :: 5UTR to 3UTR CC Sequencing Technology :: PacBio CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5718 FT /organism="Homo sapiens" FT /isolate="AN70" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <297..>5199 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*02:06" FT mRNA join(<297..396,3963..4208,4549..4830,5045..>5199) FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*02:06" FT /product="MHC class II antigen" FT CDS join(297..396,3963..4208,4549..4830,5045..5199) FT /codon_start=1 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*02:06" FT /product="MHC class II antigen" FT /db_xref="GOA:A0A140EDI6" FT /db_xref="InterPro:IPR001003" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:A0A140EDI6" FT /protein_id="QBQ82072.1" FT /translation="MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAMFVQ FT THRPTGEFMFEFDEDEQFYVDLDKKETVWHLEEFGRAFSFEAQGGLANIAILNNNLNTL FT IQRSNHTQAANDPPEVTVFPKEPVELGQPNTLICHIDRFFPPVLNVTWLCNGEPVTEGV FT AESLFLPRTDYSFHKFHYLTFVPSAEDVYDCRVEHWGLDQPLLKHWEAQEPIQMPETME FT TVLCALGLVLGLVGIIVGTVLIIKSLRSGHDPRAQGPL" XX SQ Sequence 5718 BP; 1511 A; 1378 C; 1082 G; 1747 T; 0 other; tttttacatc tctttctcta actctgaaaa tgaactgtga actggagctc tcttgaccac 60 gctggtacct aaaattctcc catctcttcc ccagcacctt ccagcgtcct ctttacccag 120 caacagagaa tgtcagctct atgatttctc tgataggtga atcccagcca tgctgattcc 180 tctccaccca tttccagtgc tagaggccca cagtttcagt ctcatctgcc tccactcggc 240 ctcagttcct catcactgtt cctgtgctca cagtcatcaa ttatagaccc cacaacatgc 300 gccctgaaga cagaatgttc catatcagag ctgtgatctt gagagccctc tccttggctt 360 tcctgctgag tctccgagga gctggggcca tcaagggtga gtgctcagga ggacgcaaga 420 gcgtcggggt gagtgatggg gtggttcaca tcaattgttg cttcaggaat cacagatttt 480 aggggctcat tgatctatct ggtcctcata gtctatgttc cctctggccc tcataataat 540 aacagcaata acagccagaa tttatgagac gcctgcatag tttctttccc catttacatc 600 tcacaggaac cttcaatgaa gataatattc cattcattta gaaattattc cttttattta 660 gaaattattt tgaaaaaact gaagctcaaa aagatgaata agttttccaa ggttacacag 720 cagatcaacg agccaagttt gaagtccaga cccagctctg agggtcgtac actgccttcc 780 ccagattcct gcacacagtg acctactacc agggccctcc tatctctctg ggatccccag 840 cctctgtctt ttgtggctgc ttcacaggaa ctccgagcta tggactctgc attaggagag 900 gaagtgcgaa gagtgtttct gtatcctctc tctcttctag gaccctaggg ctcttcctgg 960 gtctttgtgg gtggtcacaa gctttcctct ctcaagacag cagggttgca tggtcttgat 1020 agccttgtga ttcgggttct gagagatcca ggactgcaag ggaggcctag acttttgata 1080 gctgcaagga ctcagccaga gatggaccgt agtgaatgct cctttttcct gtagctgaaa 1140 tcagggagaa tgacatcaag cctgtgcatg atgctgtcat tccaaaatct agtgatgggg 1200 aaggttagaa tccataacgt acaagatgca cactggcttc agacagtttt atttaagatg 1260 tgtagaataa agaggaggtc aggctgggta gaaccagaag tatctattgc cctgttcgcg 1320 gtcacctgag ttatttttaa tgttatgtta taataaacac cacaataggc ttctcttcat 1380 agatgcaaat actttttagt attcttggta gaaattccta atgagctcag ctgtctcttc 1440 agggcttccc tgcccagtgg ttccttgtct cttaacattt aaacatgtaa tttaccttaa 1500 aaacataagt gcaaatcaac tgataaaaaa caaccttgcc ttcagtctgc atcctatccc 1560 agagacactt tctttgtgtc ctcacacgtg gagctaagct tctgacttgt ctctggtaca 1620 tccctgagga tcctctcatc ttggccatca ggaacctcta cagaaggtca aatccagtgg 1680 gttcttctca gtgcccctga cttgagttac taataacatt tgcactgtaa tccacttctt 1740 tctgatgaac taccgtgtcc ttatttttct cctgtttacc tggatcctcc ttatcatcct 1800 ttaaatcacc tcttaattat catgttctct cattataccc tgagatctca gcaattctga 1860 tttttggcac tcttcctgga aaatctcatt taacctgtgc ctgccactaa tgactctcag 1920 ttctctggcc taaactcctc tcctgagacc acccataatc cacaaatgtc tatgtattat 1980 ttctccttag atgactttca ggtcttctaa gtgcaatagc cccacagtga actcagtatc 2040 ttctcccagt caggctgtct tccccctgag agaagtggct tttgccctgt tttctgaatg 2100 cctacattga agccatctgt tccccaggaa gccttccctg atgtgctgct tgatcgcatc 2160 ttgtgtatac ccacgtatct gcacttatcc ttctgaacct gctgttgtct tgtcacttgt 2220 gtttccttct gtgacttata cgcgtctgca caacaggacg tatgtattat ttttatttga 2280 gtatttagca tctaacagtg tttgacatat agtagtcttt taatacatat ttttgtctga 2340 atggaaatga tattttgaag taaaataatc tgttccatag ctggctgatc tttggactgc 2400 agaacttgtg aaagtgtttt ttaaaaagca ttttaaaaag tacaagggac attcatgtat 2460 taagaagatg agttttcaat aactgctaga ggactttgtg tctttttata ttaccctctt 2520 tttcctgatg agtcctttga gtcctttaaa ctgaggagca agctaagttt cctagtgaaa 2580 tacctatagg atttgttttg tttagtttca aataccactc tttgcttggc cacttactgt 2640 gtcagggagt cattctcagt gaaaaataag acacagatca taccctctag acacttacaa 2700 ttacagtgac aaggagtcat tctcctgtcc ccacatgtca gggctgaaaa ctcacaggga 2760 aatccgtgag ttgggaagtg agagcagaag agctccatag ttccttctca ctctgatgca 2820 tttatcattc taaacccaga ctttcacata cacattcatc attttctttc atgataatag 2880 ttgcttttat cctcttatct ttgctaattc ttacaaacta ataaagacta agaaacaaaa 2940 taaattaaat cctacaggtg ttccaaactc agcaataatt tctagttggc ctctaaaaca 3000 aaaatcaaaa tataaatgta agaaaagttc agaatgctta gtacctgcgt gatgaaataa 3060 tctgtacact aaacccccga atcatgagtt tacctataca acaaacctgc acatgtactc 3120 ctgaacataa aataaatgtt gaaatatttt taaaaaggaa acaaaagttt ggaacaaatg 3180 ccaaaataac tgtactgtac ttttgaattt atatgcccca aatgaaaaat attatcaaca 3240 aagctataca ttctacattt tcatgttcat aaactaagac agaaacttta aaactgtcaa 3300 gagcactaaa atttgaagga tattttcttc ttcctctcaa tttcgtattt ttttctacct 3360 tttctataat aagaaaaaga aaatgtccac tctcccaacc ccacgactct aaaaacaatt 3420 ttacatctgt gtcctagaag aattaagaac ttaatgggat agaaaacctc tctactagtt 3480 ccaccagtag ccgtatgacc ttagcaagtt attaatatgt aacttccctg catttcctta 3540 cctgtaaaat gtatgatatg tatttgcttc ataaagttat tgtgacaatt caacgagtga 3600 atatgtaaag tatttagaag gatgcctggc acaactaagt gctcaacaaa tgttagctgt 3660 cattgttact attactattg tgtagggtca ggatgcccag actttcaaag accaggaagc 3720 agcttgactt atcaatgata aactttttat tttgttcttc actcctttct ttttataact 3780 gctcatctgc tctgtattat ttcctttatg gtgttgctcc ttcttcttcc ccatatgtcc 3840 ttcctttgac ctcttacttt cttccttttt atattcataa gtctttattc attctctagc 3900 tttgaccact tgcatattca aactgacatt ttgtcatgtt tttctctact ttctttatgc 3960 agcggaccat gtgtcaactt atgccatgtt tgtacagacc catagaccaa caggagagtt 4020 tatgtttgaa tttgatgaag atgagcagtt ctatgtggat ctggacaaga aggagaccgt 4080 ctggcatctg gaggagtttg gccgagcctt ttcctttgag gctcagggcg ggctggctaa 4140 cattgctata ttgaacaaca acttgaatac cttgatccag cgttccaacc acactcaggc 4200 cgccaatggt actgcctatc tttgcctctt cctctgtagc ccaactggaa gggatgagag 4260 ggcctctctg ccaccctcag actaggaagc ctaagtgccc cctgctgtgt gatcctcttc 4320 cactagtggc cgtgggctga tcccaccaca gcaagggctt tcatcctctc ttctcaggag 4380 agagaaaggt gagcagagtg aggctggtca gtggtgtgat acccctctct gtgattcaca 4440 gctgccataa aatctaaggc tgaggtagag gaccaccctc ccccaagagg tggagccttt 4500 gtgattcatc ccagaagagg gacctaacct ggtgctgtct cctcctagat ccccctgagg 4560 tgacggtgtt tcccaaggag cctgtggagc tgggccagcc caacaccctc atctgccaca 4620 ttgacaggtt cttcccacca gtgctcaatg tcacatggct gtgcaatggg gagccggtca 4680 ctgagggtgt cgctgagagc ctcttcctgc ccagaacaga ttacagcttc cacaagttcc 4740 attacctgac ctttgtgccc tcagcagagg acgtctatga ctgcagggtg gagcactggg 4800 gcttggacca gccgctcctc aagcactggg gtatgcaact gcttttctct ccataatctc 4860 ctggcatcct ctattccaaa gacctggtgt cctctgcacc agctttcccc actggccagg 4920 tctcagtcct ctcctcgtcc taacatccaa ttaactggtc cataaccttc aattcccaca 4980 accatcccag gccagaacca ccctcactac acctcctgac cctatctctt cattcttccc 5040 ccagaggccc aagagccaat ccagatgcct gagacaatgg agactgtgct ctgtgccctg 5100 ggcctggtgc tgggcctagt gggcatcatc gtgggcaccg tcctcatcat aaagtctctg 5160 cgttctggcc atgacccccg ggcccagggg cccctgtgaa atactgtaaa ggtgggaatg 5220 taaaaaagga ggtcctagaa tttgtagaat gtaaggaagg gaggaaaaat tcaatctgat 5280 aagtgttcat tgatcttcta atgggttaga agcactcagc cacataacaa caacaacatt 5340 gataactaac tgagtagtta atatggtcag gcgctattct gagggtttac attcattaac 5400 tcactttatt ctcacaaata gtctttgagg taggtactat tattttcacc atttcacatg 5460 agagatactt acatcttttt acatacacag agatcttaag cactttgatc cagttcccac 5520 agctatgaag tagtagggct accttccaat ccagaaagtc tggatccaag actgtttatc 5580 cactgtccta ttcaccctat tttgtgaagg aaaagaccaa gttgaaattc tccaagagtc 5640 cgttgtctaa taacggagcc agatctatat ttctatacat aattacaaca cagtgtggtg 5700 ggagcctgta actactta 5718 //