Dbfetch
ID MH325441; SV 1; linear; genomic DNA; STD; HUM; 2981 BP. XX AC MH325441; XX DT 12-JUN-2018 (Rel. 137, Created) DT 06-JUL-2018 (Rel. 137, Last updated, Version 2) XX DE Homo sapiens MHC class I protein (HLA-B) gene, HLA-B*40var allele, complete DE cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-2981 RA Parab S., Sharma A., Pitale P., Morjaria M., Dedhia L., Khattry N., RA Parekh S.; RT ; RL Submitted (04-MAY-2018) to the INSDC. RL HLA Lab, Marrow Donor Registry India, SL Raheja Hospital, 2nd Floor old RL Wing, Mahim, Mumbai, Maharashtra 400016, India XX DR MD5; c9634beb0784f5799ffe4297b48d1182. XX CC ##Assembly-Data-START## CC Assembly Method :: Long Amplicon Analysis v. 5.1.0.26411 CC Sequencing Technology :: Pacific Biosciences CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2981 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <1..>2981 FT /gene="HLA-B" FT /allele="HLA-B*40var" FT mRNA join(<1..348,477..746,992..1267,1842..2117,2211..2327, FT 2769..2801,2908..>2981) FT /gene="HLA-B" FT /allele="HLA-B*40var" FT /product="MHC class I protein" FT exon <1..348 FT /gene="HLA-B" FT /allele="HLA-B*40var" FT /number=1 FT 5'UTR <1..275 FT /gene="HLA-B" FT /allele="HLA-B*40var" FT CDS join(276..348,477..746,992..1267,1842..2117,2211..2327, FT 2769..2801,2908..2951) FT /codon_start=1 FT /gene="HLA-B" FT /allele="HLA-B*40var" FT /product="MHC class I protein" FT /db_xref="GOA:A0A2U9AEP5" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR010579" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:A0A2U9AEP5" FT /protein_id="AWO72996.1" FT /translation="MRVTAPRTVLLLLSAALALTETWAGSHSMRYFHTAMSRPGRGEPR FT FITVGYVDDTLFVRFDSDATSPRKEPRAPWIEQEGPEYWDRETQISKTNTQTYRESLRN FT LRGYYNQSEAGSHTLQRMYGCDVGPDGRLLRGHNQYAYDGKDYIALNEDLRSWTAADTA FT AQISQRKLEAAREAEQLRAYLEGECVEWLRRYLENGKDKLERADPPKTHVTHHPISDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPKPLTLRWEPSSQSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGK FT GGSYSQAACSDSAQGSDVSLTA" FT intron 349..476 FT /gene="HLA-B" FT /allele="HLA-B*40var" FT /number=1 FT exon 477..746 FT /gene="HLA-B" FT /allele="HLA-B*40var" FT /number=2 FT intron 747..991 FT /gene="HLA-B" FT /allele="HLA-B*40var" FT /number=2 FT exon 992..1267 FT /gene="HLA-B" FT /allele="HLA-B*40var" FT /number=3 FT intron 1268..1841 FT /gene="HLA-B" FT /allele="HLA-B*40var" FT /number=3 FT exon 1842..2117 FT /gene="HLA-B" FT /allele="HLA-B*40var" FT /number=4 FT intron 2118..2210 FT /gene="HLA-B" FT /allele="HLA-B*40var" FT /number=4 FT exon 2211..2327 FT /gene="HLA-B" FT /allele="HLA-B*40var" FT /number=5 FT intron 2328..2768 FT /gene="HLA-B" FT /allele="HLA-B*40var" FT /number=5 FT exon 2769..2801 FT /gene="HLA-B" FT /allele="HLA-B*40var" FT /number=6 FT intron 2802..2907 FT /gene="HLA-B" FT /allele="HLA-B*40var" FT /number=6 FT exon 2908..>2981 FT /gene="HLA-B" FT /allele="HLA-B*40var" FT /number=7 FT 3'UTR 2952..>2981 FT /gene="HLA-B" FT /allele="HLA-B*40var" XX SQ Sequence 2981 BP; 554 A; 893 C; 937 G; 597 T; 0 other; gaagtcccag gccccgggcg gggctctcag ggtctcaggc tccgagggcc gcgtctgcaa 60 tggggaggcg cagcgttggg gattccccac tcccacgagt ttcacttctt ctcccaacct 120 atgtcgggtc cttcttccag gatactcgtg acgcgtcccc atttcccact cccattgggt 180 gtcgggtgtc tagagaagcc aatcagcgtc gccgtggtcc cagttctaaa gtccccacgc 240 acccacccgg actcagaatc tcctcagacg ccgagatgcg ggtcacggca ccccgaaccg 300 tcctcctgct gctctcggcg gccctggccc tgaccgagac ctgggccggt gagtgcgggt 360 cggcagggaa atggcctctg tggggaggag cgaggggacc gcaggcgggg gcgcaggacc 420 cggggagccg cgccgggagg agggtcgggc gggtctcagc tcctcctcgc ccccaggctc 480 ccactccatg aggtatttcc acaccgccat gtcccggccc ggccgcgggg agccccgctt 540 catcaccgtg ggctacgtgg acgacacgct gttcgtgagg ttcgacagcg acgccacgag 600 tccgaggaag gagccgcggg cgccatggat agagcaggag gggccggagt attgggaccg 660 ggagacacag atctccaaga ccaacacaca gacttaccga gagagcctgc ggaacctgcg 720 cggctactac aaccagagcg aggccggtga gtgaccccgg cccggggcgc aggtcacgac 780 tccccatccc ccacgtacgg cccgggtcgc cccgagtctc cgggtccgag atccgacccc 840 ctgaggccgc gggacccgcc cagaccctcg accggcgaga gccccaggcg cgtttacccg 900 gtttcatttt cagttgaggc caaaatcccc gcgggttggt cggggcgggg cggggctcgg 960 gggactgggc tgaccgcggg gccggggcca gggtctcaca ccctccagag gatgtacggc 1020 tgcgacgtgg ggccggacgg gcgcctcctc cgcgggcata accagtacgc ctacgacggc 1080 aaggattaca tcgccctgaa cgaggacctg cgctcctgga ccgccgcgga cacggcggct 1140 cagatctccc agcgcaagtt ggaggcggcc cgtgaggcgg agcagctgag agcctacctg 1200 gagggcgagt gcgtggagtg gctccgcaga tacctggaga acgggaagga caagctggag 1260 cgcgctggta ccaggggcag tggggagcct tccccatctc ctataggtcg ccggggatgg 1320 cctcccacga gaagaggagg aaaatgggat cagcgctaga atgtcgccct ccgttgaatg 1380 gagaatggca tgagttttcc tgagtttcct ctgagggccc cctcttctct ctagacaatt 1440 aaggaatgac gtctctgagg aaatggaggg gaagacagtc cctagaatac tgatcagggg 1500 tcccctttga cccctgcagc agccttggga accgtgactt ttcctctcag gccttgttct 1560 ctgcctcaca ctcagtgtgt ttggggctct gattccagca cttctgagtc actttacctc 1620 cactcagatc aggagcagaa gtccctgttc cccgctcaga gactcgaact ttccaatgaa 1680 taggagatta tcccaggtgc ctgcgtccag gctggtgtct gggttctgtg ccccttcccc 1740 accccaggtg tcctgtccat tctcaggctg gtcacatggg tggtcctagg gtgtcccatg 1800 aaagatgcaa agcgcctgaa ttttctgact cttcccatca gaccccccaa agacacacgt 1860 gacccaccac cccatctctg accatgaggc caccctgagg tgctgggccc tgggtttcta 1920 ccctgcggag atcacactga cctggcagcg ggatggcgag gaccaaactc aggacactga 1980 gcttgtggag accagaccag caggagatag aaccttccag aagtgggcag ctgtggtggt 2040 gccttctgga gaagagcaga gatacacatg ccatgtacag catgaggggc tgccgaagcc 2100 cctcaccctg agatggggta aggaggggga tgaggggtca tatctcttct cagggaaagc 2160 aggagccctt cagcagggtc agggcccctc atcttcccct cctttcccag agccgtcttc 2220 ccagtccacc gtccccatcg tgggcattgt tgctggcctg gctgtcctag cagttgtggt 2280 catcggagct gtggtcgctg ctgtgatgtg taggaggaag agttcaggta gggaaggggt 2340 gaggggtggg gtctgggttt tcttgtccca ctgggggttt caagccccag gtagaagtgt 2400 tccctgcctc attactggga agcagcatgc acacaggggc taacgcagcc tgggaccctg 2460 tgtgccagca cttactcttt tgtgcagcac atgtgacaat gaaggatgga tgtatcacct 2520 tgatggttgt ggtgttgggg tcctgattcc agcattcatg agtcagggga aggtccctgc 2580 taaggacaga ccttaggagg gcagttggtc caggacccac acttgctttc ctcgtgtttc 2640 ctgatcctgc cctgggtctg tagtcatact tctggaaatt ccttttgggt ccaagactag 2700 gaggttcctc taagatctca tggccctgct tcctcccagt gccctcacag gacattttct 2760 tcccacaggt ggaaaaggag ggagctactc tcaggctgcg tgtaagtggt gggggtggga 2820 gtgtggagga gctcacccac cccataattc ctcctgtccc acgtctcctg cgggctctga 2880 ccaggtcctg tttttgttct actccaggca gcgacagtgc ccagggctct gatgtgtctc 2940 tcacagcttg aaaaggtgag attcttgggg tctagagtgg g 2981 //