Dbfetch
ID MH269368; SV 1; linear; genomic DNA; STD; HUM; 3030 BP. XX AC MH269368; XX DT 11-FEB-2019 (Rel. 139, Created) DT 11-FEB-2019 (Rel. 139, Last updated, Version 1) XX DE Homo sapiens MHC class I protein (HLA-C) gene, HLA-C*16:01:01New2 allele, DE complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3030 RA Balz V., Krause S., Enczmann J.; RT "New HLA class 1 alleles"; RL Unpublished. XX RN [2] RP 1-3030 RA Balz V., Krause S., Enczmann J.; RT ; RL Submitted (27-APR-2018) to the INSDC. RL University Hospital Duesseldorf, Institute for Transplantation Diagnostics RL and Cell Therapeutics, Medical Faculty, Moorenstr. 5, Duesseldorf, NRW RL 40225, Germany XX DR MD5; 6ff87a96dfbf7998c7be5a8ab96c4b5f. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. 2.9.0 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3030 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene 1..3030 FT /gene="HLA-C" FT /allele="HLA-C*16:01:01New2" FT mRNA join(1..170,301..570,817..1092,1680..1955,2077..2196, FT 2636..2668,2776..2823,2988..3030) FT /gene="HLA-C" FT /allele="HLA-C*16:01:01New2" FT /product="MHC class I protein" FT exon 1..170 FT /gene="HLA-C" FT /allele="HLA-C*16:01:01New2" FT /number=1 FT 5'UTR 1..97 FT /gene="HLA-C" FT /allele="HLA-C*16:01:01New2" FT CDS join(98..170,301..570,817..1092,1680..1955,2077..2196, FT 2636..2668,2776..2823,2988..2992) FT /codon_start=1 FT /gene="HLA-C" FT /allele="HLA-C*16:01:01New2" FT /product="MHC class I protein" FT /db_xref="GOA:O78179" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR010579" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:O78179" FT /protein_id="QAX33628.1" FT /translation="MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPR FT FIAVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRN FT LRGYYNQSEAGSHTLQWMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTA FT AQITQRKWEAARAAEQQRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLVSDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGG FT KGGSCSQAASSNSAQGSDESLIACKA" FT intron 171..300 FT /gene="HLA-C" FT /allele="HLA-C*16:01:01New2" FT /number=1 FT exon 301..570 FT /gene="HLA-C" FT /allele="HLA-C*16:01:01New2" FT /number=2 FT intron 571..816 FT /gene="HLA-C" FT /allele="HLA-C*16:01:01New2" FT /number=2 FT exon 817..1092 FT /gene="HLA-C" FT /allele="HLA-C*16:01:01New2" FT /number=3 FT intron 1093..1679 FT /gene="HLA-C" FT /allele="HLA-C*16:01:01New2" FT /number=3 FT exon 1680..1955 FT /gene="HLA-C" FT /allele="HLA-C*16:01:01New2" FT /number=4 FT intron 1956..2076 FT /gene="HLA-C" FT /allele="HLA-C*16:01:01New2" FT /number=4 FT exon 2077..2196 FT /gene="HLA-C" FT /allele="HLA-C*16:01:01New2" FT /number=5 FT intron 2197..2635 FT /gene="HLA-C" FT /allele="HLA-C*16:01:01New2" FT /number=5 FT exon 2636..2668 FT /gene="HLA-C" FT /allele="HLA-C*16:01:01New2" FT /number=6 FT intron 2669..2775 FT /gene="HLA-C" FT /allele="HLA-C*16:01:01New2" FT /number=6 FT exon 2776..2823 FT /gene="HLA-C" FT /allele="HLA-C*16:01:01New2" FT /number=7 FT intron 2824..2987 FT /gene="HLA-C" FT /allele="HLA-C*16:01:01New2" FT /number=7 FT exon 2988..3030 FT /gene="HLA-C" FT /allele="HLA-C*16:01:01New2" FT /number=8 FT 3'UTR 2993..3030 FT /gene="HLA-C" FT /allele="HLA-C*16:01:01New2" XX SQ Sequence 3030 BP; 567 A; 879 C; 963 G; 621 T; 0 other; ggtgtcgggt tctagagaag ccaatcagcg tctccgcagt cccggttcta aagtccccag 60 tcacccaccc ggactcggat tctccccaga cgccgagatg cgggtcatgg cgccccgaac 120 cctcatcctg ctgctctcgg gagccctggc cctgaccgag acctgggcct gtgagtgcgg 180 ggttgggagg gaaacggcct ctgcggagag gagcgagggg cccgcccggc gagggcgcag 240 gacccgggga gccgcgcagg gaggagggtc gggcgggtct cagcccctcc tcgcccccag 300 gctcccactc catgaggtat ttctacaccg ccgtgtcccg gcccggccgc ggagagcccc 360 gcttcatcgc agtgggctac gtggacgaca cgcagttcgt gcggttcgac agcgacgccg 420 cgagtccaag aggggagccg cgggcgccgt gggtggagca ggaggggccg gagtattggg 480 accgggagac acagaagtac aagcgccagg cacagactga ccgagtgagc ctgcggaacc 540 tgcgcggcta ctacaaccag agcgaggccg gtgagtgacc ccggcccggg gcgcaggtca 600 cgacccctcc ccatccccca cggacggccc gggtcgcccc gagtctcccg gtctgagatc 660 caccccgagg ctgcggaacc cgcccagacc ctcggccgga gagagcccca gtcaccttta 720 cccggtttca ttttcagttt aggccaaaat ccccgcgggt tggtcggggc tggggcgggg 780 ctcgcgggac ggggctgacc acgggggcgg ggccagggtc tcacaccctc cagtggatgt 840 atggctgcga cctggggccc gacgggcgcc tcctccgcgg gtatgaccag tccgcctacg 900 acggcaagga ttacatcgcc ctgaacgagg acctgcgctc ctggaccgcc gcggacacgg 960 cggctcagat cacccagcgc aagtgggagg cggcccgtgc ggcggagcag cagagagcct 1020 acctggaggg cacgtgcgtg gagtggctcc gcagatacct ggagaacggg aaggagacgc 1080 tgcagcgcgc gggtaccagg ggcagtgggg agccttcccc atctcctgta gatctcccgg 1140 gatggcctcc cacgaggagg ggaggaaaat gggatcagcg ctagaatatc gccctccctt 1200 gaatggagaa tgggatgagt tttcctgagt ttcctctgag ggccccctct gctctctagg 1260 acaattaagg gatgaagtcc ttgaggaaat ggaggggaag acagtccctg gaatactgat 1320 caggggtccc ctttgaccac tttgaccact gcagcagctg tggtcaggct gctgaccttt 1380 ctctcaggcc ttgttctctg cctcatgctc aatgtgtttg aaggtttgat tccagctttt 1440 ctgagttctt cagcctccac tcaggtcagg accagaagtc gctgttcctc cctcagagac 1500 tagaactttc caatgaatag gagattatcc caggtgcctg tgtccaggct ggcgtctggg 1560 ttctgtgccc ccttccccac cccaggtgtc ctgtccattc tcaggatggt cacatgggca 1620 ctgttggagt gtcgcaagag agatacaaag tgtctgaatt ttctgactct tcccgtcaga 1680 acacccaaag acacacgtga cccaccatct cgtctctgac catgaggcca ccctgaggtg 1740 ctgggccctg ggcttctacc ctgcggagat cacactgacc tggcagcggg atggcgagga 1800 ccaaactcag gacaccgagc ttgtggagac caggccagca ggagatggaa ccttccagaa 1860 gtgggcagct gtggtggtgc cttctggaga agagcagaga tacacgtgcc atgtgcagca 1920 cgaggggctg ccggagcccc tcaccctgag atggggtaag gagggggatg aggggtcatg 1980 tgtcttctca gggaaagcag aagtcctgga gcccttcagc cgggtcaggg ctgaggcttg 2040 ggggtcaggg cccctcacct tcccctcctt tcccagagcc atcttcccag cccaccatcc 2100 ccatcgtggg catcgttgct ggcctggctg tcctggctgt cctagctgtc ctaggagctg 2160 tggtggctgt tgttatgtgt aggaggaaga gctcaggtag ggaaggggtg aggagtgggg 2220 tctgggtttt cttgtcccac tgggagtttc aagccccagg tagaagtgtg ccccacctcg 2280 ttactggaag caccatccac acatgggcca tcccagcctg ggaccctgtg tgccagcact 2340 tactctgttg tgaagcacat gacaatgaag gacagatgta tcaccttgat gattatggtg 2400 ttggggtcct tgattccagc attcatgagt caggggaagg tccctgctaa ggacagacct 2460 taggagggca gttgctccag aacccacagc tgctttccct gtgtttcctg atcctgccct 2520 gggtctgcag tcatagttct ggaaacttct cttgggtcca agactaggag gttcccctaa 2580 gatcgcatgg ccctgcctcc tccctgtccc ctcacagggc attttcttcc cacaggtgga 2640 aaaggaggga gctgctctca ggctgcgtgt aagtgatggc agtgggcgtg tggaggagct 2700 cacccacccc ataattcctc ttgtcccaca tctcctgcgg gctctgacca ggtctttttt 2760 tttgttctac cccagccagc aacagtgccc agggctctga tgagtctctc atcgcttgta 2820 aaggtgagat tctggggagc tgaagtggtc gggggtgggg cagagggaaa aggcctaggt 2880 aatggggatc ctttgattgg gacgtttcga atgtgtggtg agctgttcag agtgtcatca 2940 cttaccatga ctgacctgaa tttgttcatg actattgtgt tctgtagcct gagacagctg 3000 cctgtgtggg actgagatgc aggatttctt 3030 //