Dbfetch
ID MH269337; SV 1; linear; genomic DNA; STD; HUM; 3149 BP. XX AC MH269337; XX DT 11-FEB-2019 (Rel. 139, Created) DT 11-FEB-2019 (Rel. 139, Last updated, Version 1) XX DE Homo sapiens MHC class I protein (HLA-A) gene, HLA-A*11:01:01New3 allele, DE complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3149 RA Balz V., Krause S., Enczmann J.; RT "New HLA class 1 alleles"; RL Unpublished. XX RN [2] RP 1-3149 RA Balz V., Krause S., Enczmann J.; RT ; RL Submitted (27-APR-2018) to the INSDC. RL University Hospital Duesseldorf, Institute for Transplantation Diagnostics RL and Cell Therapeutics, Medical Faculty, Moorenstr. 5, Duesseldorf, NRW RL 40225, Germany XX DR MD5; 1729a76bcccc5754b6226e4bfc8ac25e. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. 2.9.0 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3149 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene 1..3149 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01New3" FT mRNA join(1..213,344..613,855..1130,1710..1985,2088..2204, FT 2647..2679,2822..2869,3039..3149) FT /gene="HLA-A" FT /allele="HLA-A*11:01:01New3" FT /product="MHC class I protein" FT exon 1..213 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01New3" FT /number=1 FT 5'UTR 1..140 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01New3" FT CDS join(141..213,344..613,855..1130,1710..1985,2088..2204, FT 2647..2679,2822..2869,3039..3043) FT /codon_start=1 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01New3" FT /product="MHC class I protein" FT /db_xref="GOA:Q5S3G3" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR010579" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:Q5S3G3" FT /protein_id="QAX33597.1" FT /translation="MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPR FT FIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGT FT LRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMA FT AQITKRKWEAAHAAEQQRAYLEGRCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPKPLTLRWELSSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRK FT GGSYTQAASSDSAQGSDVSLTACKV" FT intron 214..343 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01New3" FT /number=1 FT exon 344..613 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01New3" FT /number=2 FT intron 614..854 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01New3" FT /number=2 FT exon 855..1130 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01New3" FT /number=3 FT intron 1131..1709 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01New3" FT /number=3 FT exon 1710..1985 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01New3" FT /number=4 FT intron 1986..2087 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01New3" FT /number=4 FT exon 2088..2204 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01New3" FT /number=5 FT intron 2205..2646 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01New3" FT /number=5 FT exon 2647..2679 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01New3" FT /number=6 FT intron 2680..2821 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01New3" FT /number=6 FT exon 2822..2869 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01New3" FT /number=7 FT intron 2870..3038 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01New3" FT /number=7 FT exon 3039..3149 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01New3" FT /number=8 FT 3'UTR 3044..3149 FT /gene="HLA-A" FT /allele="HLA-A*11:01:01New3" XX SQ Sequence 3149 BP; 606 A; 905 C; 973 G; 665 T; 0 other; cctggatact cacgacgcgg acccagttct cactcccatt gggtgtcggg tttccagaga 60 agccaatcag tgtcttcgcg gtcgctcttc taaagtccgc acgcacccac cgggactcag 120 attctcccca gaccccgagg atggccgtca tggcgccccg aaccctcctc ctgctactct 180 cgggggccct ggccctgacc cagacctggg cgggtgagtg cggggtcggg agggaaaccg 240 cctctgcggg gagaagcaag gggccctcct ggcgggggcg caggaccgtg ggagccgcgc 300 cgggaggagg gtcgggcagg tctcagccac tgctcgcccc caggctccca ctccatgagg 360 tatttctaca cctccgtgtc ccggcccggc cgcggggagc cccgcttcat cgccgtgggc 420 tacgtggacg acacgcagtt cgtgcggttc gacagcgacg ccgcgagcca gaggatggag 480 ccgcgggcgc cgtggataga gcaggagggg ccggagtatt gggaccagga gacacggaat 540 gtgaaggccc agtcacagac tgaccgagtg gacctgggga ccctgcgcgg ctactacaac 600 cagagcgagg acggtgagtg accccggccc ggggcgcagg tcacgacccc tcatccccca 660 cggacgggcc aggtggccca cagtctccgg gtccgagatc caccccgaag ccgcgggacc 720 ccgagaccct tgccccggga gaggcccagg cgcctttacc cggtttcatt ttcagtttag 780 gccaaaaatc cccccgggtt ggtcggggcc gggcagggct tgggggactg ggctgaccgc 840 ggggtcgggg ccaggttctc acaccatcca gataatgtat ggctgcgacg tggggccgga 900 cgggcgcttc ctccgcgggt accggcagga cgcctacgac ggcaaggatt acatcgccct 960 gaacgaggac ctgcgctctt ggaccgcggc ggacatggca gctcagatca ccaagcgcaa 1020 gtgggaggcg gcccatgcgg cggagcagca gagagcctac ctggagggcc ggtgcgtgga 1080 gtggctccgc agatacctgg agaacgggaa ggagacgctg cagcgcacgg gtaccagggg 1140 ccacggggcg cctccctgat cgcctataga tctcccgggc tggcctccca caaggagggg 1200 agacaattgg gaccaacact agaatatcac cctccctctg gtcctgaggg agaggaatcc 1260 tcctgggttt ccagatcctg taccagagag tgactctgag gttccgccct gctctctgac 1320 acaattaagg gataaaatct ctgaaggagt gacgggaaga cgatccctcg aatactgatg 1380 agtggttccc tttgacaccg gcagcagcct tgggcccgtg acttttcctc tcaggccttg 1440 ttctctgctt cacactcaat gtgtgtgggg gtctgagtcc agcacttctg agtctctcag 1500 cctccactca ggtcaggacc agaagtcgct gttcccttct cagggaatag aagattatcc 1560 caggtgcctg tgtccaggct ggtgtctggg ttctgtgctc tcttccccat cccgggtgtc 1620 ctgtccattc tcaagatggc cacatgcgtg ctggtggagt gtcccatgac agatgcaaaa 1680 tgcctgaatt ttctgactct tcccgtcaga cccccccaag acacatatga cccaccaccc 1740 catctctgac catgaggcca ccctgaggtg ctgggccctg ggcttctacc ctgcggagat 1800 cacactgacc tggcagcggg atggggagga ccagacccag gacacggagc tcgtggagac 1860 caggcctgca ggggatggaa ccttccagaa gtgggcggct gtggtggtgc cttctggaga 1920 ggagcagaga tacacctgcc atgtgcagca tgagggtctg cccaagcccc tcaccctgag 1980 atggggtaag gagggagatg ggggtgtcat gtctcttagg gaaagcagga gcctctctgg 2040 agacctttag cagggtcagg gcccctcacc ttcccctctt ttcccagagc tgtcttccca 2100 gcccaccatc cccatcgtgg gcatcattgc tggcctggtt ctccttggag ctgtgatcac 2160 tggagctgtg gtcgctgccg tgatgtggag gaggaagagc tcaggtggag aaggggtgaa 2220 aggtggggtc tgagatttct tgtctcactg agggttccaa gccccagcta gaaatgtgcc 2280 ctgtctcatt actgggaagc accttccaca atcatgggcc gacccagcct gggccctgtg 2340 tgccagcact tactcttttg taaagcacct gttaaaatga aggacagatt tatcaccttg 2400 attacggcgg tgatgggacc tgataccagc agtcacaagt cacaggggaa ggtccctgag 2460 gacagacctc aggagggcta ttggtccagg acccacacct gctttcttca tgtttcctga 2520 tcccgccctg ggtctgcagt cacacatttc tggaaacttc tctggggtcc aagactagga 2580 ggttcctcta ggaccttaag gccctggctc ctttctggta tctcacagga cattttcttc 2640 ccacagatag aaaaggaggg agttacactc aggctgcaag taagtatgaa ggaggctgat 2700 gcctgaggtc cttgggatat tgtgtttggg agcccatggg ggagctcacc caccccacaa 2760 ttcctcctct agccacatct tctgtgggat ctgaccaggt tctgtttttg ttctacccca 2820 ggcagtgaca gtgcccaggg ctctgatgtg tctctcacag cttgtaaagg tgagagcttg 2880 gagggcctga tgtgtgttgg gtgttgggcg gaacagtgga cacagctgtg ctatggggtt 2940 tctttgcatt ggatgtattg agcatgcgat gggctgttta aggtgtgacc cctcactgtg 3000 atggatatga atttgttcat gaatattttt ttctatagtg tgagacagct gccttgtgtg 3060 ggactgagag gcaagagttg ttcctgccct tccctttgtg acttgaagaa ccctgacttt 3120 gtttctgcaa aggcacctgc atgtgtctg 3149 //