Dbfetch
ID MH042876; SV 1; linear; genomic DNA; STD; HUM; 7122 BP. XX AC MH042876; XX DT 08-MAY-2018 (Rel. 136, Created) DT 09-MAY-2018 (Rel. 136, Last updated, Version 5) XX DE Homo sapiens isolate NT02135 MHC class II antigen (HLA-DQB1) gene, DE HLA-DQB1*03:01:03 allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-7122 RA Hou L., Persaud M., Gerfen J., Hurley C.; RT ; RL Submitted (09-MAR-2018) to the INSDC. RL School of Medicine, Georgetown University, 11333 woodglen drive, Rockville, RL MD 20852, USA XX DR MD5; 310652be4918987cfe905621b485785f. DR Ensembl-Gn; ENSG00000231286; homo_sapiens. DR Ensembl-Tr; ENST00000399088; homo_sapiens. DR Ensembl-Tr; ENST00000413089; homo_sapiens. XX CC ##Assembly-Data-START## CC Assembly Method :: Assign TruSight v. HLA-v2.1 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..7122 FT /organism="Homo sapiens" FT /chromosome="6" FT /isolate="NT02135" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <1..>7122 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:01:03" FT mRNA join(<418..526,1975..2244,4874..5155,5673..5783, FT 6904..>6917) FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:01:03" FT /product="MHC class II antigen" FT CDS join(418..526,1975..2244,4874..5155,5673..5783,6904..6917) FT /codon_start=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:01:03" FT /product="MHC class II antigen" FT /db_xref="GOA:S6B230" FT /db_xref="InterPro:IPR000353" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:S6B230" FT /protein_id="AWC68307.1" FT /translation="MSWKKALRIPGGLRAATVTLMLAMLSTPVAEGRDSPEDFVYQFKA FT MCYFTNGTERVRYVTRYIYNREEYARFDSDVEVYRAVTPLGPPDAEYWNSQKEVLERTR FT AELDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRW FT FRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQHGDVYTCHVEHPSLQNPITVEWRA FT QSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKGLLH" XX SQ Sequence 7122 BP; 1815 A; 1671 C; 1700 G; 1936 T; 0 other; tccccactta atttgcccta ttgaaagaat cccaagtatg aaaacaactg gtttttaatc 60 aatattacaa agatgtttac tgttgaatcg catttttttt ggcttcttaa aatcccttag 120 gcattcagtc ttcagctctt ccataattga gaggaaattt tcacctcaaa tgttcatcca 180 gtgcaattgg aagacgtcac agtgccaggc actggattga gaaccttcac aaaaaaaaat 240 ctgcccagag acagatgagg tccttcagct ccagtgctga ttggttcctt tccaagggac 300 catccaatcc taccacgcat ggaaacatcc acaggttttt attctttctg ccaggtacat 360 cagatccatc aggtccgagc tgtgttgact accactactt ttcccttcgt ctcaattatg 420 tcttggaaaa aggctttgcg gatccccgga ggccttcggg cagcaactgt taccttgatg 480 ctggcgatgc tgagcacccc agtggctgag ggcagagact ctcccggtaa gtgcagggca 540 gctgctctcc agagccgcca ctctgggaac agactctcct tgggctgggg tatggggatg 600 gtgatctcga ttatctcaga cacaatcttt atcaatattt cctctgtttt gggaaagaga 660 gctatgttgc attcccattt atcttttaat gatgaggtga ggacaatcca atcccatcct 720 acagacttaa gcctggaaga ggagagagga gagaaaagag gagacaaagt gttcatttac 780 taccagtgat aggacaaagt gagcatgggg ttatttttga agatatgaat ttctccaaag 840 acacagcatg atttgtcatt taggcgtgcc ccaagactgc ctggactaac tattatgaga 900 tcctgcactg ggaaatgtaa ggcagcaatg gtgtctgtag tccccgtatt tggggaaaag 960 gtgtctgtat tcctgactca gtggagcgtt tgtggaggca aaatcttggt actgagggaa 1020 gctgactggc tgaccacaga cagggagtct tcaggtttca ctgatttatg ggcaaatggt 1080 gacctgagtg ggattcagag acccgagttg atggtggact aaatttagta gaaaggagga 1140 tgtaaagaag agaaattaca catactgtga aaccactcat ttcagacaca gaacaatact 1200 ttacataaat tctctctcac tccttctaac atcctgtgtg tagatatcat gattttcttt 1260 tacacaatta tacttgtgac atggatattc tgttacgtaa cctgcccgag ctggtgactg 1320 ccacagttta atgggattct agtttatcaa attcaaaagc ttgtgctctt tcagtgaata 1380 aacgtttctt tctaggactc agagatctag gactcccttc tttctaacac agaagtgagt 1440 gaacctcaca gggcacttgg gagggtaaat ccaggcatgg gaaggaaggt attttaccca 1500 gggaccaaga gaataggcat atcaaaagag gacaggttta attcctggac ctgtctcgtc 1560 attcccttga actctcaggt ttatgtggat aactttatct ctgaggtacc caggagctcc 1620 atggaaaatg ggatttcatg cgagaacgcc ctgatccctc taagtgcaga ggtccatgca 1680 aaatcaaccc gactgcctct tcgcttggtt cacaggccca gccagacagg gacagggctt 1740 tcctcccttt cctgcctgta ggaaggcgga ttcccgaaga cccccgagag ggcgggcagg 1800 gctgggcaga gcccccggga ggatcccagg tctgcagcgc gaggcacggg ccggcgggaa 1860 ctggaggtcg cgcgggcggt tccacagctc cgggccgggt cagggcggcg gctgcggggt 1920 ggccgggctg gggccgggcc ggggccggac tgaccggccg gtgattcccc gcagaggatt 1980 tcgtgtacca gtttaaggcc atgtgctact tcaccaacgg gacggagcgc gtgcgttatg 2040 tgaccagata catctataac cgagaggagt acgcacgctt cgacagcgac gtggaggtgt 2100 accgggcggt gacgccgctg gggccccctg acgccgagta ctggaacagc cagaaggaag 2160 tcctggagag gacccgggcg gagttggaca cggtgtgcag acacaactac cagttggagc 2220 tccgcacgac cttgcagcgg cgaggtgagc gtcgtcgccc cgctgcgagg cccactcttg 2280 gccggggccc cgagtctctg cgctaggagg gacgaggggg gcgaagcctc tggaacctga 2340 gccgcgttcg ttccacccca ggggacagga gttggcggcg tgggtggtgg ggcaggtgca 2400 taggaggggc agggacctag gggcagagca ggggtacagg tagagttggt caaactgcct 2460 agttttgccc cagccttccc gtccgtcagc ctcgccctct gctgtgcacg ttctcgcctc 2520 gtgccttatg cgtttgcctc ctcgtgcctt gcctttgcta agcagtcctc tctgccccca 2580 atttctgccc tcttcccctg cccgcccgcc ccgctagcac tgccccaccc agcaaggtcc 2640 acgtgcactg ctcgcgccgc aggaagcttc aggcttggcc tggtggagtt agggctgctc 2700 cacaactgtg cgcagggcat ccagcaatta cagttgtgaa ataagatatt ttgacttttg 2760 gcttcaaatt attattcatc gtaattccgt tttcttaaat ggctctcatt catggcggag 2820 ctctttgagg tgagagtgtt ttaatcattt tatggccggt acctgacaca ttgactggca 2880 tgtggtataa gctcaataat cttctgttaa attaatgaat aaatgtgctc agctgccaat 2940 ccacttaggc tcaagaaaaa ccagaggtaa acagaacctt aaaaatggac ttttattaat 3000 tattttctat cattttgctt aattctttaa agtaaactct tattgacttg gatctaaata 3060 gtttgtgaat acaaagtctg aggaaaaaag tgtttgctaa aaataaaaac aacacttgaa 3120 tgatgtttgt aaggcagttt taatttctta gaaaagctga acaaatggca caatgcaaag 3180 agcagaagtt ttggaataaa tagattgaag ccattaaatt attggataaa aatagtttca 3240 ggttgctttt ggcctaggtt ctcccctccc cccatcacta tccacttcag gaataaacat 3300 tctgaaagtt aattttaccc atatagtgag cacttatttc taagttgcct tatcaaatac 3360 catctatgtt atgtcattta atctcgcagt tgcctgtgca ttagagatta gcatcaccac 3420 tttatatatc ctaatattag tacatgataa acactttaag taatcagccc acaagtactc 3480 accaagacct taagcctccc aaagtacaca acattcttac gttcctcact acacatctgt 3540 agagtcaaag ggacataaag ccttgttaaa gccagttttg accagaagca gcaatggtct 3600 cttcctgttt gatctccatg ttaatgggac aaaatgatac tttcaaggca ttgaaaattt 3660 atgattaatc aatcaaattt atgattaatc aatccctagt ctgactccag tgagattcac 3720 aaaactttca gtttacttta tactcccttg ccttcttttg actcacatca tagtgccggc 3780 aagtacttat atttttgcta tttcagttct atttccataa aatttatttt atcatctttt 3840 ctcataaatt tgtgccctct atttttactc ccaatctgtg taagatgaac aaatcttata 3900 agaccacata gctgactgtg atttcaggtg gactccagga aggagaacca aagaaaactt 3960 tcagtctttt taagatgaac aaatcttgta agtccccaca tagctgactg tgatttcagg 4020 tggactccag gaaggagaac caaagaaaag ttcaagtcca agcagaaacc gtgattcctt 4080 ccggatgatg gctcatgagt gccatttaat tggggtgcca cctgctgtcc tcagcaaatc 4140 ccagctatat gtatatgttc gcattacagg ctcattaacc taggctgacc tctgcaagga 4200 tctcagaata ttttctacag agaacataca tgataatatc tgattttagg acaaaaaagt 4260 aattctcaat agcaagggaa tggagtaggg tagacagcta gtaattaaac tcacttgtgt 4320 gttaaaaata aattaaggaa aaaagaaaat gagagaacat attactaaat aaagaaagca 4380 tacattaaat atttactata gttttacact aagagaataa aggaaatgca ataaagtggc 4440 ctgaaaggta aaggatgaga tgtgtaaaag aggcggggaa agatgtgtca tttttttttt 4500 actatgagca gcaatctgag aagataaagg aatcgagtta tgggcagaca tgatgtttga 4560 tcagtgttat ttgttttcaa ggcctgccta cttttttttc aaatattaca aacttttgaa 4620 gtcacattct ttttgttttt tgctgtctgt tactagatcg cacattctgt aaaggcaggg 4680 accatggtat gttgtttatc tttggattct cagtgattgt catatttatg tttgttgaat 4740 gaatcttaat ccaagacttg ggctccaggt atctttccat tctggttcca aggagggacc 4800 ttcctcacag caggcgtgct gtgtggtctc acatctcact cctatatctt tccctgtctg 4860 ttactgccct cagtggagcc cacagtgacc atctccccat ccaggacaga ggccctcaac 4920 caccacaacc tgctggtctg ctcagtgaca gatttctatc cagcccagat caaagtccgg 4980 tggtttcgga atgaccagga ggagacaacc ggcgttgtgt ccacccccct tattaggaac 5040 ggtgactgga ccttccagat cctggtgatg ctggaaatga ctccccagca tggagacgtc 5100 tacacctgcc acgtggagca ccccagcctc cagaacccca tcaccgtgga gtggcgtaag 5160 gggatattga gtttctgtta ctatgggccc cacaagacaa agggcagagc tcattctgac 5220 ccatcccttc ccatctctta tccctgatgt cactactgag ctgggaatca caggagacta 5280 gagcacttct tcctccatgg caagtgcatc agaagaatcc tgatctcatc acctttccag 5340 atgctaggga aattactcta catactgttt ctctggatcc cagtcctgat agctcggagg 5400 gactgatcat tagggctggt gactgggatc ttagggttta aggttatgga tgagctcctg 5460 aggagtggag atctgcttct ccactctctc acctactcac tgtacccaag gacctattgg 5520 ctggcctttc ccctccctta ggggtggtct gaatggagga ctagtttcct ttgacgcctt 5580 cacctcctga atctcagact ggacttcagc tcctcagcag ggatgctatg gggtgtgggg 5640 acaaacactg acactcaggc tctgcttctt aggggctcag tctgaatctg cccagagcaa 5700 gatgctgagt ggcattggag gcttcgtgct ggggctcatc ttcctcgggc tgggccttat 5760 tatccatcac aggagtcaga aaggtgagga accccaaggg aaaaggggaa gatgggctgt 5820 gacccagacc ctctgttcag agaggtcctg tctctagatg tggctctttc ctcctgaccc 5880 cgagaggaag aaagctgagc tggaggtggg aggagacagg acaagattgg aggaggcatt 5940 ggaatctgat tttactagtt gaaaggtagc cctgtcacac agctcactga tagagcttat 6000 tgaaggacat ccttaccttt catcattgtc tcattggctc ctttccaaaa gcttcctcca 6060 ttaagagggt cagagccttg gcctccttgc cttctagtga caatttcctt tgttttaggg 6120 gattttaaat tagggtgctt aaggccttga aggacatggg tgggaagaga atataactct 6180 aattaagtca catgtgtcat tttccattgg ggtgagagag tggctgtttg tgtaatgaga 6240 cctttctctg cataacttcc ttttgtaaga cctcaagggc ctccaccagc aggtaatatt 6300 tcagccgtga tccagtgtgg ggagggcaca gatgtaagag ggaagagcat gagctgagtg 6360 tacctgacca cagtggtctc cgttcatggt atatttgctg ctatgaggat caagacttag 6420 gggcgaagtt tgccagtttc taggaatctc cagaggctgt tccccagaac caagccttaa 6480 ctttggtggc atcttcctgt gaaatgtgaa gccagaacca cagcttaaat gttagacact 6540 aggatgatgc ccactttgtg ccacatgttg gtggctactg cctgtaggca ttttccagtg 6600 actgaaagag gctgctagtg gtagggatga ggtatcatcc aatttcctaa aaagaccgaa 6660 cccttcatat tccccagaag agtaacagct gttcccccac ctccctcaca tctgcatcaa 6720 gctgaagttc tgtgtcttca tgagctgatt tcacctttgc acagatcttg ggggaggtga 6780 tgacaataca ctctggacct cagctttgtc tgtctgaagc tgcagggggc ccctgagggg 6840 tgggggagat ggcaggccca ccagcgtacc ctgtgctgat catccctctt ctctcttctc 6900 cagggctcct gcactgactc ctgagactat tttaactggg attggttatc acttttctgt 6960 aacgcctgct tgtccctgcc cagaattccc aactgcctgt gtcagcctgt ccccctgaga 7020 tcagagtcct acagtggctg tcacgcagcc accaggtcat ctcctttcat ccccacccca 7080 aggcgctggc tgtgactctg cttcctgcac tgacccagag cc 7122 //