Dbfetch
ID MH017046; SV 1; linear; genomic DNA; STD; HUM; 6700 BP. XX AC MH017046; XX DT 26-APR-2018 (Rel. 136, Created) DT 26-APR-2018 (Rel. 136, Last updated, Version 1) XX DE Homo sapiens isolate NT02119 MHC class II antigen (HLA-DQB1) gene, DE HLA-DQB1*06:46 allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-6700 RA Hou L., Persaud M., Hurley C.; RT ; RL Submitted (02-MAR-2018) to the INSDC. RL School of Medicine, Georgetown University, 11333 Woodglen Drive, Rockville, RL MD 20852, USA XX DR MD5; 2dfc0b337f9983bf4fb9248d5718d03d. XX CC ##Assembly-Data-START## CC Assembly Method :: Assign TruSight v. HLA-v2.1 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6700 FT /organism="Homo sapiens" FT /chromosome="6" FT /isolate="NT02119" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <1..>6700 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:46" FT mRNA join(<229..337,1769..2038,4588..4869,5379..5489, FT 6587..>6600) FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:46" FT /product="MHC class II antigen" FT CDS join(229..337,1769..2038,4588..4869,5379..5489,6587..6600) FT /codon_start=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:46" FT /product="MHC class II antigen" FT /db_xref="GOA:A0A2S0RR48" FT /db_xref="InterPro:IPR000353" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:A0A2S0RR48" FT /protein_id="AWA46100.1" FT /translation="MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKG FT MCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTR FT AELDTVCRHNYEVGYRGILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRW FT FRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRA FT QSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSQKGLLH" XX SQ Sequence 6700 BP; 1697 A; 1532 C; 1642 G; 1829 T; 0 other; aagacgtcac agtgccaggc actggattga gaaccttcac aaaaaaaatg tctgcccaga 60 gacagatgag gtccttcagc tccagtgctg attggttctt ttccgaggga ccatccaatc 120 ctgccactca cggaaacatc cacaggtttt tattctttct gccaggtaca tcagatccat 180 caggtccgag ctgtgttgac taccactgct tttcccttcg tctcagttat gtcttggaag 240 aaggctttgc ggatccccgg agaccttcgg gtagcaactg tcaccttgat gctggcgatg 300 ctgagctccc tactggctga gggcagagac tctcccggta agtgcagggc agctgctctc 360 cagagccgcc actctgggaa caggctctcc ttgggctggg gtatggggga tggtgatctc 420 tatgatcttg gacacaatct ttcatcaaca tttcctctct cttgggaaag aaagctatgt 480 tgcattccca tttatctttt agtgatgaga tgaggacaat ccaatcccca tcctacaggc 540 ttaagcctgg aagaggagga gagaggagag aaagaggaga taaagtgtac atttactacc 600 agcgatagga caaagtgagc atggggttat ttttgaagat atgaatttct ccaaagacac 660 agcaggattt gtcatttagg cgtgccccaa gactgcctgg acttaggatt atgagatcct 720 gcattggaaa atgtgaggca gcaatggtgt ctgtagtctc tgtatttgag gaaaatttgt 780 ctctattcct gaccgagtgg agcatttgtg gaggcaaaat cttggtgctg agggaagctg 840 actggctgac cacagagagg gagtcttcgg gtttcactga tttatgggca aatggtgact 900 tgagtgggat tcagagaccc gagttaatgg tggactgaat ttagtaggaa ggaggatgta 960 aagaagggaa ataacacata ttgtgaaacc actcacttca gacagaacaa tactttatat 1020 aacttctctc tcactccttc taacatcctg tgtgtagata tcatgatttt cttttacaca 1080 attatacttg tgatatggat attctgttac ataacctgcc caaactggtg actgccacag 1140 tttaattgga atctagttta tcaaattcaa aagcttgtgc tctttccatg aataaatgtc 1200 tctatctagg actcagaggt gtaggtcctt tccaacatag aagggagtga acctcaacgg 1260 gacttgggag ggtaaatcta ggcatgggaa ggaaggtatt ttacccaggg accaagagaa 1320 tacgcgtgtc agaacgaggc caggcttaat tcctggacct atctcgtcat tccgttgaac 1380 tctcagattt atgtggataa ctttatctct gaggtatcca ggagcttcat gaaaaatggg 1440 atttcatgcg agaacgccct gatccctcta agtgcagagg tgcatgtaaa atcagcccga 1500 ctgcctcttc gctgggttca caggctcagg cagggacagg gctttcctcc ctttcctgga 1560 tgtaggaagg cagattccag aagcccgcaa agaaggcggg cagagctggg cagagccgcc 1620 gggaggatcc caggtctgga gcgccaggca cgggcgggcg ggaactggag gtcgcgcggg 1680 cggttccaca gctccaggcc gggtcagggc ggcggctgcg ggggcggccg ggctggggcc 1740 tgactgaccg gccggtgatt ccccgcagag gatttcgtgt tccagtttaa gggcatgtgc 1800 tacttcacca acgggacgga gcgcgtgcgt cttgtgacca gatacatcta taaccgagag 1860 gagtacgcgc gcttcgacag cgacgtgggg gtgtaccgcg cggtgacgcc gcaggggcgg 1920 cctgatgccg agtactggaa cagccagaag gaagtcctgg aggggacccg ggcggagttg 1980 gacacggtgt gcagacacaa ctacgaggtg gggtaccgcg ggatcctgca gaggagaggt 2040 gagcgtcgtc gcccctccgt gaggcccacc cttggccgag accccgagtt tctgtgccgg 2100 gaggggcgat gggggcgagg tctctgaaat ctgagcccag ttcattccac cccaggggaa 2160 aggaggcggc ggcggggtgg tgggggcagg tgcatcggag gggcggggac ctagggcaga 2220 gcagggggac aagcagagtt ggccaggctg cctagtgtcc cccccagcct ccccgtccgt 2280 cggcctcgtc ctccgctctg cacgtttctc gcctcgtgcc ttatgtgttt gcctcctcgt 2340 accttacctt cgctaagcag ttctctctgc ccccagtgcc caccctcttc ccctgcccgc 2400 cggcctcgct agcactgccc cacccagcaa ggcccacgtg cgcagcttgc gccgcaggaa 2460 gcttcaggct tggcctggtg gagttagggc tgccccacag ctgcgcgcag ggcatccagc 2520 aattacagtt gcgaaataag atattttgac tttttggctt caaatcatta ttcatcgtaa 2580 ttctgttttc ttaaatggct accactaatg gcggagatct ttgaggcgag agactgttta 2640 attattgcat gcctggtacc tgacacattg actggtatgt ggtgtgagct caatgatctt 2700 ctgttaaatt catgaataaa tgtactcagc tgccaatcca gttaggttca agaaaaaaac 2760 agaggcttac aaatgaactt tatcaattat tttctaacat tttgcttaat gctttcaagt 2820 aaactcttac tgacttggat cttaatagaa tttgtgaata caaagtctga ggaaaatgtg 2880 tttgctaaaa ataaaaacaa tgcttgaatg atgttgtaag gcagagtttt aatttcttag 2940 aaaagctgaa caaatagcac tatgcaaaga tcagaagttt gggaataaat aggttgaagc 3000 tattaaatta ttggataaaa atagtttcag gttgcttttg gcctaggtta tcccctcccc 3060 cccatcacta tccacttcag gaataaacat tctgaaagtc aattttaccc attcaggaag 3120 cacttatttc tagacagttg ccttatcaaa taccatctat gttatgtcat ttaatctcac 3180 agctacctgt gcattagaga ttagcatcac cactttatat atcctaatat tggtacatga 3240 taaacacttt aagtaatcag cccacaatta ctcaccaaga tcttaagcct cccaaagtac 3300 acaacattct tatgttcctc actacacata tgtagagtct aagggatgta aggccttgtt 3360 aaagccagtt ttgaccagaa gcagcaatga gtctattcct gtttgttctg tgtgttaatg 3420 cggcattgaa aattcatgat taatcaatcc ctagtctgac cccggtgtta tctatgcagg 3480 ttcacaaaac ttttagtttg ctttacactc ccttgccttc ttttgactca catcctaatg 3540 ccagcaagta cttatatttt tgctatttca gttttatttc cataaaattt attttatcat 3600 cttttctcat aaatttgtgc cctctatttt tactcccagt ctgttgaaga tgaacaaatc 3660 ttataaggcc acatagctga ctctgatttc agttggcctc caggaaggag aacctaaaga 3720 aaagttcaag tccaagcaga aaccatgatt ccttccggat gatggctcaa gagtgccatt 3780 taattggggt gccacctgct gacctcagca aatcccagtt atatgtatat gttcacatta 3840 caggctcatt agcccaggcc gacctctgca cggatctcag aatattttct gtggagaaca 3900 tacacgataa tgtctgattt cagaacaaga aagtaattgt caatagcaag gaaatggagt 3960 agggtagaca gctagtaatt aaactcactt gtgcgttaaa aagaaattaa ggaaaaaaag 4020 aaaatgagag aacatattac taaataaaga aagcacacat taaatatttg ctatagtttc 4080 acactaagag aataaaggaa atgtgataaa gtggcctaaa aggaaaggat gagatgtgta 4140 aaagaggcgg ggaaagatgt gtcatttttt ttactatgag cagcaatctg agaagataaa 4200 ggaattgagt tgtggacaaa catgatgttt gatcaagggt tatttgtttt gaaggcctgc 4260 ctactttttt ttcaaatatt acaaactttt gaaataacat tctacttttt tttcaaatat 4320 tacaaacttt tgaaataaca ttctttttgt tttttgctgt ctgttactag attgcacatt 4380 ctataaatgc agggaccata gtatgttatt tatctttgaa ttctcagtga ttgtcaaatt 4440 tatatttgtt gaatgaacct taatccaaga cttcgactcc aggtatcttt ccactctggt 4500 ccaaggaggg atccttcctc atggtagacg tggtgtgtgt tctcacatct cactcctatg 4560 tcttttcctg tctgttactg ccctcagtgg agcccacagt gaccatctcc ccatccagga 4620 cagaggccct caaccaccac aacctgctgg tctgctcggt gacagatttc tatccaggcc 4680 agatcaaagt ccggtggttt cggaatgatc aggaggagac agccggcgtt gtgtccaccc 4740 cccttattag gaatggtgac tggactttcc agatcctggt gatgctggaa atgactcccc 4800 agcgtggaga tgtctacacc tgccacgtgg agcaccccag cctccagagc cccatcaccg 4860 tggagtggcg taaggggata ttgagtttct gttactatgg gcccacaaga caaagagctc 4920 cttctgaccc attccttccc atctcttatc cctgatgtca ctactgagct gggaatcaca 4980 ggagactaga gcacctcttg ctccatggca agtgcatcag aagaatcctg gtctcatcac 5040 ctttccagat gctagggaaa ttactctaca tactgttgct ctgaatccca gtcctgatag 5100 ctctgaggga ctgattctta gggctggtga ctgggatctt agggtctaag gttatggatg 5160 agttcttgaa gagcagagat ttgcttcccc actctctcac ctattcactg tatccaagga 5220 cctattggct ggtctttccc ctccttaggg gtggtctgaa tggagaacta ggttcctttg 5280 atgccttcac cttctgcacc tcagactgga cttcaactcc tcagcaggga tgctatgggg 5340 tgtggggaca aacacagaca ctcagttctg ctctttaggg gctcagtctg aatctgccca 5400 gagcaagatg ctgagtggcg ttggaggctt cgtgctgggg ctgatcttcc ttgggctggg 5460 ccttatcatc cgtcaaagga gtcagaaagg tgaggaaccc caggggaaaa ggggaagatg 5520 ggctgtgacc cagaccctct gttcagagtg gtcctgtctg tagattagct ctttcctcct 5580 gaccctgaga agaagtgcga ggagacagga caagatggga ggaggcattg gaatctgatt 5640 ttactggttg aaaggtagcg ctgtcacaga gctgactgat agagcttatt ccagggcatc 5700 cttaccattc atcattgtct cactggctcc tttccaaaag cttcctccat taagagggtc 5760 agagcctcag cttcctttct ttctagtgac aatttccttt gttttagggg attttaaatt 5820 agggtgctga aggcctggaa gaacatgggt gggaagagaa tgtaactcta agtcatgtgt 5880 gtcattttcc tttggggtga gagagtggct gtttgtgtaa tgagaccttt ctctgcataa 5940 cttccttttg taagacctca agggcctcca ccagcaggta atatttcagc catgatccag 6000 tgtggggagg cacaggtata agagggaaga gcatgagctg agtgtacctg accacagtgg 6060 tccatgttca tggcctattt gctgctatga ggatcaagac ttaggggaga agtttgccag 6120 tttctaggaa tctccagaca ttgttcccca gaaccaagcc ttaactttgg tggcatcttc 6180 ttgtgaaatg tggagccaga accacagctt aaatgttaga cactaggatg atgcccactt 6240 tgtgccacat gatggtggct actgcctgta agcattttcc agtgactgaa agaggctgct 6300 agtggtcggg aagagatatc atccaatttc ctaaaaagac tgaacccttc atattcccca 6360 gaagaataac agctgttccc cacctcccac acatctgcat caagctgaag ttctgtgtcc 6420 tcatgagctg atttcacctt tgcacagatc ttgggggagg tgatgacaat acaccctgga 6480 cctcaacttt ctctgtctga agctgcaggg ggcccctgaa gggtggggga gatggcaggc 6540 ccaccaggat accctgtgct gatcaatgct cttctctctt ctccagggct tctgcactga 6600 ctcctgagac tattttaact aggattggtt atcactcttc tgtgatgcct gcttatgcct 6660 gcccagaatt cccagctgcc tgtgtcagct tgtccccctg 6700 //