Dbfetch
ID MG941004; SV 1; linear; genomic DNA; STD; HUM; 2855 BP. XX AC MG941004; XX DT 14-NOV-2018 (Rel. 138, Created) DT 14-NOV-2018 (Rel. 138, Last updated, Version 1) XX DE Homo sapiens isolate 17-4748 MHC class I antigen (HLA-Cw) gene, DE HLA-Cw-HLA-C*04var allele, partial cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-2855 RA Biagini C., Curcio M.; RT "Identification of a new HLA-C*04 allele variant in an Italian patient"; RL Unpublished. XX RN [2] RP 1-2855 RA Biagini C., Curcio M.; RT ; RL Submitted (12-FEB-2018) to the INSDC. RL Medicina Trasfusionale e Biologia dei Trapianti, Azienda RL Ospedaliera-Universitaria Pisana, via Paradisa, Pisa, Pisa 56124, Pisa XX DR MD5; 94c030cd90be9f69be867985a7f2b187. XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2855 FT /organism="Homo sapiens" FT /chromosome="6p21.33" FT /isolate="17-4748" FT /mol_type="genomic DNA" FT /country="Italy:Tuscany" FT /collection_date="Dec-2017" FT /sex="female" FT /cell_type="leukocytes" FT /PCR_primers="fwd_name: c_96g, fwd_seq: ggtgagtgcggggttg, FT fwd_name: c_96a, fwd_seq: tgtgagtgcggggtta, rev_name: FT c_427c, rev_seq: gttcactcggtcagc" FT /db_xref="taxon:9606" FT gene <59..>2784 FT /gene="HLA-Cw" FT /allele="HLA-C*04var" FT mRNA join(<59..131,262..531,778..1053,1641..1916,2038..2157, FT 2597..2629,2737..>2784) FT /gene="HLA-Cw" FT /allele="HLA-C*04var" FT /product="MHC class I antigen" FT CDS join(59..131,262..531,778..1053,1641..1916,2038..2157, FT 2597..2629,2737..>2784) FT /codon_start=1 FT /gene="HLA-Cw" FT /allele="HLA-C*04var" FT /product="MHC class I antigen" FT /db_xref="GOA:A0A3G3NG95" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR010579" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:A0A3G3NG95" FT /protein_id="AYR18391.1" FT /translation="MRVMAPRTLILLLSGALALTETWAGSHSMRYFSTSVSWPGRGEPR FT FIAVGYVDDTQFVRFDSDAASPRGESREPWVEQEGPEYWDRETQKYKRQAQADRVNLRK FT LRGYYNQSEDGSHTLQRMFGCDLGPDGRLLRGYNQFAYDGKDYIALNEDLRSWTAADTA FT AQITQRKWEAAREAEQRRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHE FT ATLRCWALGFYPAEITLTWQWDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPEPLTLRWKPSSQPTIPIVGIVAGLAVLAVLAVLGAMVAVVMCRRKSSGG FT KGGSCSQAASSNSAQGSDESLIACK" XX SQ Sequence 2855 BP; 538 A; 833 C; 914 G; 570 T; 0 other; tcccggttct aaagtcccca gtcacccacc cggactcaga ttctccccag acgccgagat 60 gcgggtcatg gcgccccgaa ccctcatcct gctgctctcg ggagccctgg ccctgaccga 120 gacctgggcc ggtgagtgcg gggttgggag ggaaacggcc tctggggaga ggagcgaggg 180 gcccgcccgg cgagggcgca ggacccgggg agccgcgcag ggaggagggt cgggcgggtc 240 tcagccactc ctcgtcccca ggctcccact ccatgaggta tttctccaca tccgtgtcct 300 ggcccggccg cggggagccc cgcttcatcg cagtgggcta cgtggacgac acgcagttcg 360 tgcggttcga cagcgacgcc gcgagtccaa gaggggagtc gcgggagccg tgggtggagc 420 aggaggggcc ggagtattgg gaccgggaga cacagaagta caagcgccag gcacaggctg 480 accgagtgaa cctgcggaaa ctgcgcggct actacaacca gagcgaggac ggtgagtgac 540 cccggcccgg ggcgcaggtc acgacccctc cccatccccc acggacggcc cgggtcgccc 600 cgagtctccc cgtctgagat ccaccccgag gctgcggaac ccgcccagac cctcgaccgg 660 agagagcccc agtcaccttt acccggtttc attttcagtt taggccaaaa tccccgcggg 720 ttggtcggga ctggggcggg gctcggggga ccgggctgac cacgggggcg gggccagggt 780 ctcacaccct ccagaggatg tttggctgcg acctggggcc ggacgggcgc ctcctccgcg 840 ggtataacca gttcgcctac gacggcaagg attacatcgc cctgaacgag gatctgcgct 900 cctggaccgc cgcggacacg gcggctcaga tcacccagcg caagtgggag gcggcccgtg 960 aggcggagca gcggagagcc tacctggagg gcacgtgcgt ggagtggctc cgcagatacc 1020 tggagaacgg gaaggagacg ctgcagcgcg cgggtaccag gggcagtggg gagccttccc 1080 catctcccgt agatctcccg ggatggcctc ccacgaggag gggaggaaaa tgggatcagc 1140 gctagaatat cgccctccct tgaatggaga atgggatgag ttttcctgag tttcctctga 1200 gggccccctc tgctctctag gacaattaag ggatgaagtc cttgaggaaa tggaggggaa 1260 gacagtccct ggaatactga tcaggggtcc cctttgacca ctttgaccac tgcagcagct 1320 gtggtcaggc tgctgacctt tctctcaggc cttgttctct gcctgacgct caatgtgttt 1380 gaaggtttga ttccagcttt tctgagtcct tcggcctcca ctcaggtcag gaccagaagt 1440 cgctgttcct ccctcagaga ctagaacttt ccaatgaata ggagattatc ccaggtgcct 1500 gtgtccaggc tggcgtctgg gttctgtgcc cccttcccca ccccaggtgt cctgtccatt 1560 ctcaggatgg tcacatgggc gctgttggag tgtcgcaaga gagatacaaa gtgtctgaat 1620 tttctgactc ttcccatcag aacacccaaa gacacacgtg acccaccatc ccgtctctga 1680 ccatgaggcc accctgaggt gctgggccct gggcttctac cctgcggaga tcacactgac 1740 ctggcagtgg gatggggagg accaaactca ggacaccgag cttgtggaga ccaggccagc 1800 aggagatgga accttccaga agtgggcagc tgtggtggtg ccttctggag aagagcagag 1860 atacacgtgc catgttcagc acgaggggct gccggagccc ctcaccctga gatggagtaa 1920 ggagggggat gaggggtgat gtgtcttctc agggaaagca gaagtcctgg agcccttcag 1980 ccgggtcagg gctgaggctt ggaggtcagg gcccctcacc ttcccctcct ttcccagagc 2040 cgtcttccca gcccaccatc cccatcgtgg gcatcgttgc tggcctggct gtcctggctg 2100 tcctagctgt cctaggagct atggtggctg ttgtgatgtg taggaggaag agctcaggta 2160 gggaaggggt gaggagtggg gtctgggttt tcttgttcca ctgggagttt caagccccag 2220 gtagaagtgt gccccacctc gttactggaa gcaccatcca cacgtgggcc atcccagcct 2280 gggaccctgt gtgccagcac ttactctgtt gtgaagcaca tgacaatgaa ggacagatgt 2340 atcaccttga tgattatggt gttggggtcc ttgattccag cattcatgag tcaggggaag 2400 gtccctgcta aggacagacc ttaggagggc agttgcttca gaacccacag ctgctttccc 2460 cgtgtttcct gatcctgccc tgggtctgca gtcatagttc tggaaacttc tcttgggtcc 2520 aagactagga ggttccccta agatcgcatg gccctgcctc ctccctgtcc cctcacaggg 2580 cattttcttc ccacaggtgg aaaaggaggg agctgctctc aggctgcgtg taagtgatgg 2640 cggtgggcgt gtggaggagc tcacccaccc cataattcct cttgtcccac atctcctgcg 2700 ggctctgacc aggtcttttt ttttgttcta ccccagccag caacagtgcc cagggctctg 2760 atgagtctct catcgcttgt aaaggtgaga ttctggggag ctgaagtggt cgggggtggg 2820 gcagagggaa aaggcctagg taatggggat ccttt 2855 //