Dbfetch
ID MG715479; SV 1; linear; genomic DNA; STD; HUM; 3359 BP.
XX
AC MG715479;
XX
DT 08-FEB-2018 (Rel. 135, Created)
DT 08-FEB-2018 (Rel. 135, Last updated, Version 2)
XX
DE Homo sapiens isolate NT01928 MHC class I antigen (HLA-C) gene, HLA-C*05:35
DE allele, partial cds.
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-3359
RA Lazaro A.M., Hou L., Enriquez E., Persaud M., Hurley C.K.;
RT "Novel HLA Class I alleles";
RL Unpublished.
XX
RN [2]
RP 1-3359
RA Lazaro A.M., Hou L., Enriquez E., Persaud M., Hurley C.K.;
RT ;
RL Submitted (20-DEC-2017) to the INSDC.
RL Oncology, C.W.Bill Young DoD Marrow Donor Recruitment and Research Program,
RL 11333 Woodglen Dr, Rockville, MD 20852, USA
XX
DR MD5; 6946bee74c2000d9f4bf54c7c01952e1.
XX
CC ##Assembly-Data-START##
CC Assembly Method :: Assign TruSight v. HLA2.1.0.934; GenDex v.
CC V2.7.0.9307; Sequencher v. V5.4.6
CC Sequencing Technology :: Illumina
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1..3359
FT /organism="Homo sapiens"
FT /chromosome="6"
FT /isolate="NT01928"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT gene <295..>3020
FT /gene="HLA-C"
FT /allele="HLA-C*05:35"
FT mRNA join(<295..367,498..767,1014..1289,1877..2152,2274..2393,
FT 2833..2865,2973..>3020)
FT /gene="HLA-C"
FT /allele="HLA-C*05:35"
FT /product="MHC class I antigen"
FT CDS join(295..367,498..767,1014..1289,1877..2152,2274..2393,
FT 2833..2865,2973..>3020)
FT /codon_start=1
FT /gene="HLA-C"
FT /allele="HLA-C*05:35"
FT /product="MHC class I antigen"
FT /db_xref="GOA:A0A2K9VPU4"
FT /db_xref="InterPro:IPR001039"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR010579"
FT /db_xref="InterPro:IPR011161"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="InterPro:IPR037055"
FT /db_xref="UniProtKB/TrEMBL:A0A2K9VPU4"
FT /protein_id="AUV64455.1"
FT /translation="MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPR
FT FIAVGYVDDTQFVQFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVNLRK
FT LRGYYNQSEVGSHTLQRMYGCDLGPDGRLLRGYNQFAYDGKDYIALNEDLRSWTAADKA
FT AQITQRKWEAAREAEQRRAYLEGTCVEWLRRYLENGKKTLQRAEHPKTHVTHHPVSDHE
FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY
FT TCHVQHEGLPEPLTLRWGPSSQPTIPIVGIVAGLAVLAVLAVLGAVMAVVMCRRKSSGG
FT KGGSCSQAASSNSAQGSDESLIACK"
XX
SQ Sequence 3359 BP; 634 A; 978 C; 1047 G; 700 T; 0 other;
aggagaagag ggatcaggac gaagtcccag gtcccgggcg gggctctcag ggtctcaggc 60
tccaagggcc gtgtctgcac tggggaggcg ccgcgttgag gattctccac tcccctgagt 120
ttcacttctt cttccaacct gcgtcgggtc cttcttcctg aatactcatg acgcgtcccc 180
aattcccact cccattgggt gtcgggttct agagaagcca atcagcgtct ccgcagtccc 240
ggttctaaag tccccagtca cccacccgga ctcggattct ccccagacgc cgagatgcgg 300
gtcatggcgc cccgaaccct catcctgctg ctctcgggag ccctggccct gaccgagacc 360
tgggcctgtg agtgcgaggt tgggagggaa acggcctctg cggagaggag cgaggggccc 420
gcccggcgag ggcgcaggac ccggggagcc gcgcagggag gagggtcggg cgggtctcag 480
cccctcctcg cccccaggct cccactccat gaggtatttc tacaccgccg tgtcccggcc 540
cggccgcgga gagccccgct tcatcgcagt gggctacgtg gacgacacgc agttcgtgca 600
gttcgacagc gacgccgcga gtccaagagg ggagccgcgg gcgccgtggg tggagcagga 660
ggggccggag tattgggacc gggagacaca gaagtacaag cgccaggcac agactgaccg 720
agtgaacctg cggaaactgc gcggctacta caaccagagc gaggtcggtg agtgaccccg 780
gcccggggcg caggtcacga cccctcccca tcccccacgg acggcccggg tcgccccgag 840
tctcccggtc tgagatccac cccgaggctg cggaacccgc ccagaccctc gaccggagag 900
agccccagtc acctttaccc ggtttcattt tcagtttagg ccaaaatccc cgcgggttgg 960
tcggggctgg ggcggggctc gggggacggg gctgaccacg ggggcggggc cagggtctca 1020
caccctccag aggatgtatg gctgcgacct ggggcccgac gggcgcctcc tccgcgggta 1080
taaccagttc gcctacgacg gcaaggatta catcgccctg aatgaggacc tgcgctcctg 1140
gaccgccgcg gacaaggcgg ctcagatcac ccagcgcaag tgggaggcgg cccgtgaggc 1200
ggagcagcgg agagcctacc tggagggcac gtgcgtggag tggctccgca gatacctgga 1260
gaacgggaag aagacgctgc agcgcgcggg taccaggggc agtggggagc cttccccatc 1320
tcctgtagat ctcccgggat ggcctcccac gaggagggga ggaaaatggg atcagcgctg 1380
gaatatcgcc ctcccttgaa tggagaatgg gatgagtttt cctgagtttc ttctgagggc 1440
cccctctgct ctctaggaca attaagggat gaagtccttg aggaaatgga ggggaagaca 1500
gtccctggaa tactgatcag gggtcccctt tgaccacttt gaccactgca gcagctgtgg 1560
tcaggctgct gacctttctc tcaggccttg ttctctgcct cacgctcaat gtgtttaaag 1620
gtttgattcc agcttttctg agtccttcgg cctccactca ggtcaggacc agaagtcgct 1680
gttcctccct cagagactag aactttccaa tgaataggag attatcccag gtgcctgtgt 1740
ccaggctggc gtctgggttc tgtgccccct tccccacccc aggtgtcctg tccattctca 1800
ggatggtcac atgggcactg ttggagtgtc gcaagagaga tacaaagtgt ctgaattttc 1860
tgactcttcc cgtcagaaca cccaaagaca cacgtgaccc accatcccgt ctctgaccat 1920
gaggccaccc tgaggtgctg ggccctgggc ttctaccctg cggagatcac actgacctgg 1980
cagcgggatg gcgaggacca aactcaggac accgagcttg tggagaccag gccagcagga 2040
gatggaacct tccagaagtg ggcagctgtg gtggtgcctt ctggagaaga gcagagatac 2100
acgtgccatg tgcagcacga ggggctgcca gagcccctca ccctgagatg gggtaaggag 2160
ggggatgagg ggtcatgtgt cttctcaggg aaagcagaag tcctggagcc cttcagccgg 2220
gtcagggctg aggcttgggg gtcagggccc ctcaccttcc cctcctttcc cagggccatc 2280
ttcccagccc accatcccca tcgtgggcat cgttgctggc ctggctgtcc tggctgtcct 2340
agctgtccta ggagctgtga tggctgttgt gatgtgtagg aggaagagct caggtaggga 2400
aggggtgagg agtggggtct gggttttctt gtcccactgg gagtttcaag ccccaggtag 2460
aagtgtgccc cacctcgtta ctggaagcac catccacaca tgggccatcc cagcctggga 2520
ccctgtgtgc tagcacttac tctgttgtga agcacatgac aatgaaggac agatgtatca 2580
ccttgatgat tatggtgttg gggtccttga ttccagcatt catgagtcag gggaaggtcc 2640
ctgctaagga cagaccttag gagggcagtt gctccagaac ccacagctgc tttccccgtg 2700
tttcctgatc ctgccctggg tctgcagtca tagttctgga aacttctctt gggtccaaga 2760
ctaggaggtt cccctaagat cgcatggccc tgcctcctcc ctgtcccctc acagggcatt 2820
ttcttcccac aggtggaaaa ggagggagct gctctcaggc tgcgtgtaag tgatggcggt 2880
gggcgtgtgg aggagctcac ccaccccata attcctcttg tcccacatct cctgcgggct 2940
ctgaccaggt cttttttttt gttctacccc agccagcaac agtgcccagg gctctgatga 3000
gtctctcatc gcttgtaaag gtgagattct ggggagctga agtggtcggg ggtggggcag 3060
agggaaaagg cctaggtaat ggggatcctt tgattgggac gtttcgaatg tgtggtgagc 3120
tgttcagagt gtcatcactt accatgactg acctgaattt gttcatgact attgtgttct 3180
gtagcctgag acagctgcct gtgtgggact gagatgcagg atttcttcac acctttcctt 3240
tgtgacttca agagcctctg gcatctcttt ctgcaaaggc atctgaatgt gtctgcgttc 3300
ctgttagcat aatgtgagga ggtggagaga cagcccaccc ccgtgtccac cgtgacccc 3359
//