Dbfetch

ID   MG715479; SV 1; linear; genomic DNA; STD; HUM; 3359 BP.
XX
AC   MG715479;
XX
DT   08-FEB-2018 (Rel. 135, Created)
DT   08-FEB-2018 (Rel. 135, Last updated, Version 2)
XX
DE   Homo sapiens isolate NT01928 MHC class I antigen (HLA-C) gene, HLA-C*05:35
DE   allele, partial cds.
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-3359
RA   Lazaro A.M., Hou L., Enriquez E., Persaud M., Hurley C.K.;
RT   "Novel HLA Class I alleles";
RL   Unpublished.
XX
RN   [2]
RP   1-3359
RA   Lazaro A.M., Hou L., Enriquez E., Persaud M., Hurley C.K.;
RT   ;
RL   Submitted (20-DEC-2017) to the INSDC.
RL   Oncology, C.W.Bill Young DoD Marrow Donor Recruitment and Research Program,
RL   11333 Woodglen Dr, Rockville, MD 20852, USA
XX
DR   MD5; 6946bee74c2000d9f4bf54c7c01952e1.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: Assign TruSight v. HLA2.1.0.934; GenDex v.
CC                            V2.7.0.9307; Sequencher v. V5.4.6
CC   Sequencing Technology :: Illumina
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..3359
FT                   /organism="Homo sapiens"
FT                   /chromosome="6"
FT                   /isolate="NT01928"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   gene            <295..>3020
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*05:35"
FT   mRNA            join(<295..367,498..767,1014..1289,1877..2152,2274..2393,
FT                   2833..2865,2973..>3020)
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*05:35"
FT                   /product="MHC class I antigen"
FT   CDS             join(295..367,498..767,1014..1289,1877..2152,2274..2393,
FT                   2833..2865,2973..>3020)
FT                   /codon_start=1
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*05:35"
FT                   /product="MHC class I antigen"
FT                   /db_xref="GOA:A0A2K9VPU4"
FT                   /db_xref="InterPro:IPR001039"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR010579"
FT                   /db_xref="InterPro:IPR011161"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR036179"
FT                   /db_xref="InterPro:IPR037055"
FT                   /db_xref="UniProtKB/TrEMBL:A0A2K9VPU4"
FT                   /protein_id="AUV64455.1"
FT                   /translation="MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPR
FT                   FIAVGYVDDTQFVQFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVNLRK
FT                   LRGYYNQSEVGSHTLQRMYGCDLGPDGRLLRGYNQFAYDGKDYIALNEDLRSWTAADKA
FT                   AQITQRKWEAAREAEQRRAYLEGTCVEWLRRYLENGKKTLQRAEHPKTHVTHHPVSDHE
FT                   ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY
FT                   TCHVQHEGLPEPLTLRWGPSSQPTIPIVGIVAGLAVLAVLAVLGAVMAVVMCRRKSSGG
FT                   KGGSCSQAASSNSAQGSDESLIACK"
XX
SQ   Sequence 3359 BP; 634 A; 978 C; 1047 G; 700 T; 0 other;
     aggagaagag ggatcaggac gaagtcccag gtcccgggcg gggctctcag ggtctcaggc        60
     tccaagggcc gtgtctgcac tggggaggcg ccgcgttgag gattctccac tcccctgagt       120
     ttcacttctt cttccaacct gcgtcgggtc cttcttcctg aatactcatg acgcgtcccc       180
     aattcccact cccattgggt gtcgggttct agagaagcca atcagcgtct ccgcagtccc       240
     ggttctaaag tccccagtca cccacccgga ctcggattct ccccagacgc cgagatgcgg       300
     gtcatggcgc cccgaaccct catcctgctg ctctcgggag ccctggccct gaccgagacc       360
     tgggcctgtg agtgcgaggt tgggagggaa acggcctctg cggagaggag cgaggggccc       420
     gcccggcgag ggcgcaggac ccggggagcc gcgcagggag gagggtcggg cgggtctcag       480
     cccctcctcg cccccaggct cccactccat gaggtatttc tacaccgccg tgtcccggcc       540
     cggccgcgga gagccccgct tcatcgcagt gggctacgtg gacgacacgc agttcgtgca       600
     gttcgacagc gacgccgcga gtccaagagg ggagccgcgg gcgccgtggg tggagcagga       660
     ggggccggag tattgggacc gggagacaca gaagtacaag cgccaggcac agactgaccg       720
     agtgaacctg cggaaactgc gcggctacta caaccagagc gaggtcggtg agtgaccccg       780
     gcccggggcg caggtcacga cccctcccca tcccccacgg acggcccggg tcgccccgag       840
     tctcccggtc tgagatccac cccgaggctg cggaacccgc ccagaccctc gaccggagag       900
     agccccagtc acctttaccc ggtttcattt tcagtttagg ccaaaatccc cgcgggttgg       960
     tcggggctgg ggcggggctc gggggacggg gctgaccacg ggggcggggc cagggtctca      1020
     caccctccag aggatgtatg gctgcgacct ggggcccgac gggcgcctcc tccgcgggta      1080
     taaccagttc gcctacgacg gcaaggatta catcgccctg aatgaggacc tgcgctcctg      1140
     gaccgccgcg gacaaggcgg ctcagatcac ccagcgcaag tgggaggcgg cccgtgaggc      1200
     ggagcagcgg agagcctacc tggagggcac gtgcgtggag tggctccgca gatacctgga      1260
     gaacgggaag aagacgctgc agcgcgcggg taccaggggc agtggggagc cttccccatc      1320
     tcctgtagat ctcccgggat ggcctcccac gaggagggga ggaaaatggg atcagcgctg      1380
     gaatatcgcc ctcccttgaa tggagaatgg gatgagtttt cctgagtttc ttctgagggc      1440
     cccctctgct ctctaggaca attaagggat gaagtccttg aggaaatgga ggggaagaca      1500
     gtccctggaa tactgatcag gggtcccctt tgaccacttt gaccactgca gcagctgtgg      1560
     tcaggctgct gacctttctc tcaggccttg ttctctgcct cacgctcaat gtgtttaaag      1620
     gtttgattcc agcttttctg agtccttcgg cctccactca ggtcaggacc agaagtcgct      1680
     gttcctccct cagagactag aactttccaa tgaataggag attatcccag gtgcctgtgt      1740
     ccaggctggc gtctgggttc tgtgccccct tccccacccc aggtgtcctg tccattctca      1800
     ggatggtcac atgggcactg ttggagtgtc gcaagagaga tacaaagtgt ctgaattttc      1860
     tgactcttcc cgtcagaaca cccaaagaca cacgtgaccc accatcccgt ctctgaccat      1920
     gaggccaccc tgaggtgctg ggccctgggc ttctaccctg cggagatcac actgacctgg      1980
     cagcgggatg gcgaggacca aactcaggac accgagcttg tggagaccag gccagcagga      2040
     gatggaacct tccagaagtg ggcagctgtg gtggtgcctt ctggagaaga gcagagatac      2100
     acgtgccatg tgcagcacga ggggctgcca gagcccctca ccctgagatg gggtaaggag      2160
     ggggatgagg ggtcatgtgt cttctcaggg aaagcagaag tcctggagcc cttcagccgg      2220
     gtcagggctg aggcttgggg gtcagggccc ctcaccttcc cctcctttcc cagggccatc      2280
     ttcccagccc accatcccca tcgtgggcat cgttgctggc ctggctgtcc tggctgtcct      2340
     agctgtccta ggagctgtga tggctgttgt gatgtgtagg aggaagagct caggtaggga      2400
     aggggtgagg agtggggtct gggttttctt gtcccactgg gagtttcaag ccccaggtag      2460
     aagtgtgccc cacctcgtta ctggaagcac catccacaca tgggccatcc cagcctggga      2520
     ccctgtgtgc tagcacttac tctgttgtga agcacatgac aatgaaggac agatgtatca      2580
     ccttgatgat tatggtgttg gggtccttga ttccagcatt catgagtcag gggaaggtcc      2640
     ctgctaagga cagaccttag gagggcagtt gctccagaac ccacagctgc tttccccgtg      2700
     tttcctgatc ctgccctggg tctgcagtca tagttctgga aacttctctt gggtccaaga      2760
     ctaggaggtt cccctaagat cgcatggccc tgcctcctcc ctgtcccctc acagggcatt      2820
     ttcttcccac aggtggaaaa ggagggagct gctctcaggc tgcgtgtaag tgatggcggt      2880
     gggcgtgtgg aggagctcac ccaccccata attcctcttg tcccacatct cctgcgggct      2940
     ctgaccaggt cttttttttt gttctacccc agccagcaac agtgcccagg gctctgatga      3000
     gtctctcatc gcttgtaaag gtgagattct ggggagctga agtggtcggg ggtggggcag      3060
     agggaaaagg cctaggtaat ggggatcctt tgattgggac gtttcgaatg tgtggtgagc      3120
     tgttcagagt gtcatcactt accatgactg acctgaattt gttcatgact attgtgttct      3180
     gtagcctgag acagctgcct gtgtgggact gagatgcagg atttcttcac acctttcctt      3240
     tgtgacttca agagcctctg gcatctcttt ctgcaaaggc atctgaatgt gtctgcgttc      3300
     ctgttagcat aatgtgagga ggtggagaga cagcccaccc ccgtgtccac cgtgacccc       3359
//