Dbfetch
ID MG525298; SV 1; linear; genomic DNA; STD; HUM; 3003 BP.
XX
AC MG525298;
XX
DT 15-JAN-2018 (Rel. 135, Created)
DT 08-MAR-2018 (Rel. 136, Last updated, Version 2)
XX
DE Homo sapiens isolate NT01715 MHC class I antigen (HLA-B) gene, HLA-B*78:04
DE allele, complete cds.
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RC Publication Status: Available-Online prior to print DOI: 10.1111/iji.12357
RP 1-3003
RX DOI; .1111/iji.12357.
RX PUBMED; 29405566.
RA Marsh S.G.;
RT "Nomenclature for factors of the HLA system, update December 2017";
RL Int. J. Immunogenet. 45(2):88-93(2018).
XX
RN [2]
RP 1-3003
RA Lazaro A.M., Hou L., Enriquez E., Persaud M., Hurley C.K.;
RT "Novel HLA Class I alleles";
RL Unpublished.
XX
RN [3]
RP 1-3003
RA Lazaro A.M., Hou L., Enriquez E., Persaud M., Hurley C.K.;
RT ;
RL Submitted (13-NOV-2017) to the INSDC.
RL Oncology, C.W.Bill Young DoD Marrow Donor Recruitment and Research Program,
RL 11333 Woodglen Dr, Rockville, MD 20852, USA
XX
DR MD5; 9e8eef472f83961e27bde0747d4023dd.
XX
FH Key Location/Qualifiers
FH
FT source 1..3003
FT /organism="Homo sapiens"
FT /chromosome="6"
FT /isolate="NT01715"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT gene <285..>2973
FT /gene="HLA-B"
FT /allele="HLA-B*78:04"
FT mRNA join(<285..357,487..756,1002..1277,1853..2128,2233..2349,
FT 2791..2823,2930..>2973)
FT /gene="HLA-B"
FT /allele="HLA-B*78:04"
FT /product="MHC class I antigen"
FT CDS join(285..357,487..756,1002..1277,1853..2128,2233..2349,
FT 2791..2823,2930..2973)
FT /codon_start=1
FT /gene="HLA-B"
FT /allele="HLA-B*78:04"
FT /product="MHC class I antigen"
FT /db_xref="GOA:A0A2I6Q7C9"
FT /db_xref="InterPro:IPR001039"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR010579"
FT /db_xref="InterPro:IPR011161"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="InterPro:IPR037055"
FT /db_xref="UniProtKB/TrEMBL:A0A2I6Q7C9"
FT /protein_id="AUM84871.1"
FT /translation="MRVTAPRTVLLLLWGAVALTETWAGSHSMRYFYTAMSRPGRGEPR
FT FIAVGYVDDTQFVRFDSDAASPRTEPRAPWIEQEGPEYWDRNTQIFKTNTQTYRESLRN
FT LRGYYNQSEAGSHTWQTMYGCDVGPDGRLLRGHNQYAYDGKDYIALNEDLSSWTAADTA
FT AQITQRKWEAARVAEQLRAYLEGLCVEWLRRYLENGKETLQRADPPKTHVTHHPVSDHE
FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRY
FT TCHVQHEGLPKPLTLRWEPSSQSTIPIVGIVAGLAVLAVVVIGAVVATVMCRRKSSGGK
FT GGSYSQAASSDSAQGSDVSLTA"
XX
SQ Sequence 3003 BP; 560 A; 895 C; 944 G; 604 T; 0 other;
gatcaggacg aagtcccagg ccccgggcgg ggctctcagg gtctcaggct ccgagagcct 60
tgtctgcatt ggggaggcgc agcgttgggg attccccact cccacgagtt tcacttcttc 120
tcccaaccta tgtcgggtcc ttcttccagg atactcgtga cgcgtcccca tttcccactc 180
ccattgggtg tcggatatct agagaagcca atcagtgtcg ccggggtccc agttctaaag 240
tccccacgca cccacccgga ctcagaatct cctcagacgc cgagatgcgg gtcacggcgc 300
cccgaaccgt cctcctgctg ctctgggggg cagtggccct gaccgagacc tgggccggtg 360
agtgcggggt cgggagggaa atggcctctg tggggaggag cgaggggacc gcaggcgggg 420
gcgcaggacc tgaggagccg cgccgggagg agggtcgggc gggtctcagc ccctcctcgc 480
ccccaggctc ccactccatg aggtatttct acaccgccat gtcccggccc ggccgcgggg 540
agccccgctt catcgcagtg ggctacgtgg acgacaccca gttcgtgagg ttcgacagcg 600
acgccgcgag tccgaggacg gagccccggg cgccatggat agagcaggag gggccggagt 660
attgggaccg gaacacacag atcttcaaga ccaacacaca gacttaccga gagagcctgc 720
ggaacctgcg cggctactac aaccagagcg aggccggtga gtgaccccgg cccggggcgc 780
aggtcacgac tccccatccc ccacgtacgg cccgggtcgc cccgagtctc cgggtccgag 840
atccgcctcc ctgaggccgc gggacccgcc cagaccctcg accggcgaga gccccaggcg 900
cgtttacccg gtttcatttt cagttgaggc caaaatcccc gcgggttggt cggggcgggg 960
cggggctcgg gggacggggc tgaccgcggg gccggggcca gggtctcaca cttggcagac 1020
gatgtatggc tgcgacgtgg ggccggacgg gcgcctcctc cgcgggcata accagtacgc 1080
ctacgacggc aaagattaca tcgccctgaa cgaggacctg agctcctgga ccgcggcgga 1140
caccgcggct cagatcaccc agcgcaagtg ggaggcggcc cgtgtggcgg agcagctgag 1200
agcctacctg gagggcctgt gcgtggagtg gctccgcaga tacctggaga acgggaagga 1260
gacgctgcag cgcgcgggta ccaggggcag tggggagcct tccccatctc ctataggtcg 1320
ccggggatgg cctcccacga gaagaggagg aaaatgggat cagcgctaga atgtcgccct 1380
cccttgaatg gagaatggca tgagttttcc tgagtttcct ctgagggccc cctcttctct 1440
ctaggacaat taagggatga cgtctctgag gaaatggagg ggaagacagt ccctagaata 1500
ctgatcaggg gtcccctttg acccctgcag cagccttggg aaccgtgact tttcctctca 1560
ggccttgttc tctgcctcac actcagtgtg tttggggctc tgattccagc acttctgagt 1620
cactttacct ccactcagat caggagcaga agtccctgtt ccccgctcag agactcgaac 1680
tttccaatga ataggagatt atcccaggtg cctgcgtcca ggctggtgtc tgggttctgt 1740
gccccttccc cacaccaggt gtcctgtcca ttctcaggct ggtcacatgg gtggtcctag 1800
ggtgtcccat gagagatgca aagcgcctga attttctgac tcttcccatc agacccccca 1860
aagacacacg tgacccacca ccccgtctct gaccatgagg ccaccctgag gtgctgggcc 1920
ctgggcttct accctgcgga gatcacactg acctggcagc gggatggcga ggaccaaact 1980
caggacactg agcttgtgga gaccagacca gcaggagata gaaccttcca gaagtgggca 2040
gctgtggtgg tgccttctgg agaagagcag agatacacat gccatgtaca gcatgagggg 2100
ctgccgaagc ccctcaccct gagatggggt aaggaggggg atgaggggtc atatctcttc 2160
tcagggaaag caggagccct tctggagccc ttcagcaggg tcagggcccc tcgtcttccc 2220
ctcctttccc agagccatct tcccagtcca ccatccccat cgtgggcatt gttgctggcc 2280
tggctgtcct agcagttgtg gtcatcggag ctgtggtcgc tactgtgatg tgtaggagga 2340
agagctcagg tagggaaggg gtgaggggtg gggtctgggt tttcttgtcc cactgggggt 2400
ttcaagcccc aggtagaagt gttccctgcc tcattactgg gaagcagcat ccacacaggg 2460
gctaacgcag cctgggaccc tgtgtgccag cacttactct tttgtgcagc acatgtgaca 2520
atgaaggacg gatgtatcac cttgatggtt gtggtgttgg ggtcctgatt tcagcattca 2580
tgagtcaggg gaaggtccct gctaaggaca gaccttagga gggcagttgg tccaggaccc 2640
acacttgctt tcctcgtgtt tcctgatcct gccttgggtc tgtagtcata cttctggaaa 2700
ttccttttgg gtccaagacg aggaggttcc tctaagatct catggccctg cttcctccca 2760
gtcccctcac aggacatttt cttcccacag gtggaaaagg agggagctac tctcaggctg 2820
cgtgtaagtg gtgggggtgg gagtgtggag gagctcaccc accccataat tcctcctgtc 2880
ccacgtctcc tgcgggctct gaccaggtcc tgtttttgtt ctactccagc cagcgacagt 2940
gcccagggct ctgatgtgtc tctcacagct tgaaaaggtg agattcttgg ggtctagagt 3000
ggg 3003
//