Dbfetch
ID MG525278; SV 1; linear; genomic DNA; STD; HUM; 2989 BP. XX AC MG525278; XX DT 15-JAN-2018 (Rel. 135, Created) DT 08-MAR-2018 (Rel. 136, Last updated, Version 2) XX DE Homo sapiens isolate NT01691 MHC class I antigen (HLA-B) gene, HLA-B*08:39 DE allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RC Publication Status: Available-Online prior to print DOI: 10.1111/iji.12357 RP 1-2989 RX DOI; .1111/iji.12357. RX PUBMED; 29405566. RA Marsh S.G.; RT "Nomenclature for factors of the HLA system, update December 2017"; RL Int. J. Immunogenet. 45(2):88-93(2018). XX RN [2] RP 1-2989 RA Lazaro A.M., Hou L., Enriquez E., Persaud M., Hurley C.K.; RT "Novel HLA Class I alleles"; RL Unpublished. XX RN [3] RP 1-2989 RA Lazaro A.M., Hou L., Enriquez E., Persaud M., Hurley C.K.; RT ; RL Submitted (13-NOV-2017) to the INSDC. RL Oncology, C.W.Bill Young DoD Marrow Donor Recruitment and Research Program, RL 11333 Woodglen Dr, Rockville, MD 20852, USA XX DR MD5; a8dcb0dc954bfffd30a567e590adde92. XX FH Key Location/Qualifiers FH FT source 1..2989 FT /organism="Homo sapiens" FT /chromosome="6" FT /isolate="NT01691" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <285..>2959 FT /gene="HLA-B" FT /allele="HLA-B*08:39" FT mRNA join(<285..357,486..755,1002..1277,1850..2125,2219..2335, FT 2777..2809,2916..>2959) FT /gene="HLA-B" FT /allele="HLA-B*08:39" FT /product="MHC class I antigen" FT CDS join(285..357,486..755,1002..1277,1850..2125,2219..2335, FT 2777..2809,2916..2959) FT /codon_start=1 FT /gene="HLA-B" FT /allele="HLA-B*08:39" FT /product="MHC class I antigen" FT /db_xref="GOA:A0A2I6Q7B1" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR010579" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:A0A2I6Q7B1" FT /protein_id="AUM84851.1" FT /translation="MLVMAPRTVLLLLSAALALTETWAGSHSMRYFDTAMSRPGRGEPR FT FISVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYWDRNTQIFKTNTQTDRESLRN FT LRGYYNQSEARSHTLQSMYGCDVGPDGRLLRGHNQYAYDGKDYIALNEDLRSWTAADTA FT AQITQRKWEAARVAEQDRAYLEGTCVEWLRRYLENGKDTLERADPPKTHVTHHPISDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPKPLTLRWEPSSQSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGK FT GGSYSQAACSDSAQGSDVSLTA" XX SQ Sequence 2989 BP; 554 A; 899 C; 942 G; 594 T; 0 other; gatcaggacg aagtcccagg tcccggacgg ggctctcagg gtctcaggct ccgagggccg 60 cgtctgcaat ggggaggcgc agcgttgggg attccccact cccctgagtt tcacttcttc 120 tcccaacttg tgtcgggtcc ttcttccagg atactcgtga cgcatcccca cttcccactc 180 ccattgggtg tcggatatct agagaagcca atcagcgtcg ccggggtccc agttctaaag 240 tccccacgca cccacccgga ctcagagtct cctcagacgc cgagatgctg gtcatggcgc 300 cccgaaccgt cctcctgctg ctctcggcgg ccctggccct gaccgagacc tgggccggtg 360 agtgcgggtc gggagggaaa tggcctctgc cgggaggagc gaggggaccg caggcggggg 420 cgcaggacct gaggagccgc gccgggagga gggtcgggcg ggtctcagcc cctcctcgcc 480 cccaggctcc cactccatga ggtatttcga caccgccatg tcccggcccg gccgcgggga 540 gccccgcttc atctcagtgg gctacgtgga cgacacgcag ttcgtgaggt tcgacagcga 600 cgccgcgagt ccgagagagg agccgcgggc gccgtggata gagcaggagg ggccggagta 660 ttgggaccgg aacacacaga tcttcaagac caacacacag actgaccgag agagcctgcg 720 gaacctgcgc ggctactaca accagagcga ggccagtgag tgaccccggc ccggggcgca 780 ggtcacgact ccccatcccc cacggacggc ccgggtcgcc ccgagtctcc gggtccgaga 840 tccgcctccc tgaggccgcg ggacccgccc agaccctcga ccggcgagag ccccaggcgc 900 gtttacccgg tttcattttc agttgaggcc aaaatccccg cgggttggtc ggggcggggc 960 ggggctcggg gggacggggc tgaccgcggg gccggggcca gggtctcaca ccctccagag 1020 catgtacggc tgcgacgtgg ggccggacgg gcgcctcctc cgcgggcata accagtacgc 1080 ctacgacggc aaggattaca tcgccctgaa cgaggacctg cgctcctgga ccgcggcgga 1140 caccgcggct cagatcaccc agcgcaagtg ggaggcggcc cgtgtggcgg agcaggacag 1200 agcctacctg gagggcacgt gcgtggagtg gctccgcaga tacctggaga acgggaagga 1260 cacgctggag cgcgcgggta ccaggggcag tggggagcct tccccatctc ctataggtcg 1320 ccggggatgg cctcccacga gaagaggagg aaaatgggat cagcgctaga atgtcgccct 1380 cccttgaatg gagaatggca tgagttttcc tgagtttcct ctgagggccc cctcttctct 1440 ctagacaatt aagggatgac gtctctgagg aaatggaggg gaagacagtc cctagaatac 1500 tgatcagggg tcccctttga cccctgcagc agccttggga accgtgactt ttcctctcag 1560 gccttgttct ctgcctcaca ctcagtgtgt ttggggctct gattccagca cttctgagtc 1620 actttacctc cactcagatc aggagcagaa gtccctgttc cccgctcaga gactcgaact 1680 ttccaatgaa taggagatta tcccaggtgc ctgcatccgc tggtgtctgg gttctgtgcc 1740 ccttccccac cccaggtgtc ctgtccattc tcaggctggt cacatgggtg gtcctagggt 1800 gtgccatgag agatgcaaag cgcctgaatt ttctgactct tcccatcaga ccccccaaag 1860 acacacgtga cccaccaccc catctctgac catgaggcca ccctgaggtg ctgggccctg 1920 ggcttctacc ctgcggagat cacactgacc tggcagcggg atggcgagga ccaaactcag 1980 gacactgagc ttgtggagac cagaccagca ggagatagaa ccttccagaa gtgggcagct 2040 gtggtggtgc cttctggaga agagcagaga tacacatgcc atgtacagca tgaggggctg 2100 ccgaagcccc tcaccctgag atggggtaag gagggggatg aggggtcata tctcttctca 2160 gggaaagcag gagcccttca gcagggtcag ggcccctcat cttcccctcc tttcccagag 2220 ccgtcttccc agtccaccgt ccccatcgtg ggcattgttg ctggcctggc tgtcctagca 2280 gttgtggtca tcggagctgt ggtcgctgct gtgatgtgta ggaggaagag ctcaggtagg 2340 gaaggggtga ggggtggggt ctgggttttc ttgtcccact gggggtttca agccccaggt 2400 agaagtgttc cctgcctcat tactgggatg cagcatccac acaggggcta acgcagcctg 2460 ggaccctgtg tgccagcact tactcttttg tgcagcacat gtgacaatga aggacggatg 2520 tatcaccttg gtggttgtgg tgttggggtc ctgattccag cattcatgag tcaggggaag 2580 gtccctgcta aggacagacc ttaggagggc agttggtcca ggacccacac ttgctttcct 2640 cgtgtttcct gatcctgcct tgggtctgta gtcatacttc tggaaattcc ttttgggtcc 2700 aagacgagga ggttcctcta agatctcatg gccctgcttc ctcccagtcc cctcacaggg 2760 cattttcttc ccacaggtgg aaaaggaggg agctactctc aggctgcgtg taagtgatgg 2820 gggtgggagt gtggaggagc tcacccaccc cataattcct cctgtcccac gtctcctgcg 2880 ggctctgacc aggtcctgtt tttgttctac tccaggcagc gacagtgccc agggctctga 2940 tgtgtctctc acagcttgaa aaggtgagat tcttggggtc tagagtggg 2989 //