Dbfetch
ID MG491998; SV 1; linear; genomic DNA; STD; HUM; 3218 BP. XX AC MG491998; XX DT 09-APR-2018 (Rel. 136, Created) DT 09-APR-2018 (Rel. 136, Last updated, Version 2) XX DE Homo sapiens MHC class I antigen (HLA-C) gene, HLA-C*15:05:01new allele, DE complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-3218 RX DOI; .4049/jimmunol.1701780. RX PUBMED; 29549179. RA Nemat-Gorgani N., Hilton H.G., Henn B.M., Lin M., Gignoux C.R., RA Myrick J.W., Werely C.J., Granka J.M., Moller M., Hoal E.G., Yawata M., RA Yawata N., Boelen L., Asquith B., Parham P., Norman P.J.; RT "Different Selected Mechanisms Attenuated the Inhibitory Interaction of RT KIR2DL1 with C2+ HLA-C in Two Indigenous Human Populations in Southern RT Africa"; RL J. Immunol. 200(8):2640-2655(2018). XX RN [2] RP 1-3218 RA Nemat-Gorgani N., Norman P.J., Parham P.; RT ; RL Submitted (09-NOV-2017) to the INSDC. RL Structural Biology, Stanford University, 299 West Campus Drive, Stanford, RL CA 94305, USA XX DR MD5; 4bb43099daf5a286f19c6f911543f350. DR EuropePMC; PMC5990024; 29549179. XX CC ##Assembly-Data-START## CC Assembly Method :: GenDx v. 15 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3218 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <284..>3178 FT /gene="HLA-C" FT /allele="HLA-C*15:05:01new" FT mRNA join(<284..356,487..756,1003..1278,1866..2141,2263..2382, FT 2822..2854,2962..3009,3174..>3178) FT /gene="HLA-C" FT /allele="HLA-C*15:05:01new" FT /product="MHC class I antigen" FT CDS join(284..356,487..756,1003..1278,1866..2141,2263..2382, FT 2822..2854,2962..3009,3174..3178) FT /codon_start=1 FT /gene="HLA-C" FT /allele="HLA-C*15:05:01new" FT /product="MHC class I antigen" FT /db_xref="GOA:A0A2R4FYN5" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR010579" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:A0A2R4FYN5" FT /protein_id="AVT42619.1" FT /translation="MRVMAPRTLLLLLSGALALTETWACSHSMRYFYTAVSRPGRGEPH FT FIAVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQNYKRQAQTDRVNLRK FT LRGYYNQSEAGSHIIQRMYGCDLGPDGRLLRGHDQFAYDGKDYIALNEDLRSWTAADTA FT AQITQRKWEAAREAEQLRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHE FT ATLRCWALGFYPAEITLTWQQDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVMAVVMCRRKSSGG FT KGGSCSQAASSNSAQGSDESLIACKA" XX SQ Sequence 3218 BP; 601 A; 942 C; 1011 G; 664 T; 0 other; gatcaggacg aagtcccagg tcccgggcgg ggctctcagg gtctcaggct ccaagggccg 60 tgtctgcact ggggaggcgc cgcgttgagg attctccact cccctgagtt tcacttcttc 120 tcccaacctg cgacgggtcc ttcttcctga atactcatga cgcgtcccca attcccactc 180 ccattgggtg tcgggttcta gagaagccaa tcagcgtctc cgcagtcccg gttctaaagt 240 ccccagtcac ccacccggac tcggattctc cccagacgcc gagatgcggg tcatggcgcc 300 ccgaaccctc ctcctgctgc tctcgggagc cctggccctg accgagacct gggcctgtga 360 gtgcggggtt gggagggaaa cggcctctgc ggagaggagc gaggggcccg cccggcgagg 420 gcgcaggacc cggggagccg cgcagggagg agggtcgggc gggtctcagc ccctcctcgc 480 ccccaggctc ccactccatg aggtatttct acaccgctgt gtcccggccc ggccgcggag 540 agccccactt catcgcagtg ggctacgtgg acgacacgca gttcgtgcgg ttcgacagcg 600 acgccgcgag tccaagaggg gagccgcggg cgccgtgggt ggagcaggag gggccggagt 660 attgggaccg ggagacacag aactacaagc gccaggcaca gactgaccga gtgaacctgc 720 ggaaactgcg cggctactac aaccagagcg aggccggtga gtgaccccgg cccggggcgc 780 aggtcacgac ccctccccat cccccacgga cggcccgggt cgccccgagt ctcccggtct 840 gagatccacc ccgaggctgc ggaacccgcc cagaccctcg accggagaga gccccagtca 900 cctttacccg gtttcatttt cagtttaggc caaaatcccc gcgggttggt cggggctggg 960 gcggggctcg ggggacgggg ctgaccacgg gggcggggcc agggtctcac atcatccaga 1020 ggatgtatgg ctgcgacctg gggcccgacg ggcgcctcct ccgcgggcat gaccagttcg 1080 cctacgacgg caaggattac atcgccctga acgaggacct gcgctcctgg accgccgcgg 1140 acacggcggc tcagatcacc cagcgcaagt gggaggcggc ccgtgaggcg gagcagctga 1200 gagcctacct ggagggcacg tgcgtggagt ggctccgcag atacctggag aacgggaagg 1260 agacgctgca gcgcgcgggt accaggggca gtggggagcc ttccctatct cctgtagatc 1320 tcccgggatg gccttccacg aggaggggag gaaaatggga tcagcgctag aatatcgccc 1380 tcccttgaat ggagaatggg atgagttttc ctgagtttcc tctgagggcc ccctctgctc 1440 tctaggacaa ttaagggatg aagtccttga ggaaatggag gggaagacag tccctggaat 1500 actgatcagg ggtccccttt gaccactttg accactgcag cagctgtggt caggctgctg 1560 acctttctct caggccttgt tctctgcctc acgctcaatg tgtttgaagg tttgattcca 1620 gcttttctga gtccttcggc ctccactcag gtcaggacca gaagtcgctg ttcctccctc 1680 agagactaga actttccaat gaataggaga ttatcccagg tgcctgtgtc caggctggcg 1740 tctgggttct gtgccccctt ccccacccca ggtgtcctgt ccattctcag gatggtcaca 1800 tgggcgctgt tggagtgtcg caagagagat acaaagtgtc tgaattttct gactcttccc 1860 gtcagaacac ccaaagacac acgtgaccca ccatcccgtc tctgaccatg aggccaccct 1920 gaggtgctgg gccctgggct tctaccctgc ggagatcaca ctgacctggc agcaggatgg 1980 cgaggaccaa actcaggaca ccgagcttgt ggagaccagg ccagcaggag atggaacctt 2040 ccagaagtgg gcagctgtgg tggtgccttc tggagaagag cagagataca cgtgccatgt 2100 gcagcacgag gggctgccgg agcccctcac cctgagatgg ggtaaggagg gggatgaggg 2160 gtcatgtgtc ttctcaggga aagcagaagt cctggagccc ttcagccggg tcagggctga 2220 ggcttggggg tcagggcccc tcaccttccc ctcctttccc agagccatct tcccagccca 2280 ccatccccat cgtgggcatc gttgctggcc tggctgtcct ggctgtccta gctgtcctag 2340 gagctgtgat ggctgttgtg atgtgtagga ggaagagctc aggtagggaa ggggtgagga 2400 gtggggtctg ggttttcttg tcccactggg agtttcaagc cccaggtaga agtgtgcccc 2460 acctcgttac tggaagcacc atccacacat gggccatccc agcctgggac cctgtgtgcc 2520 agcacttact ctgttgtgaa gcacatgaca atgaaggaca gatgtatcac cttgatgatt 2580 atggtgttgg ggtccttgat tccagcattc atgagtcagg ggaaggtccc tgctaaggac 2640 agaccttagg agggcagttg ctccagaacc cacagctgct ttccccgtgt ttcctgatcc 2700 tgccctgggt ctgcagtcat agttctggaa acttctcttg ggtccaagac taggaggttc 2760 ccctaagatc gcatggccct gcctcctccc tgtcccctca cagggcattt tcttcccaca 2820 ggtggaaaag gagggagctg ctctcaggct gcgtgtaagt gatggcggtg ggcgtgtgga 2880 ggagcttacc caccccataa ttcctcttgt cccacatctc ctgcgggctc tgaccaggtc 2940 tttttttttg ttctacccca gccagcaaca gtgcccaggg ctctgatgag tctctcatcg 3000 cttgtaaagg tgagattctg gggagctgaa gtggtcgggg gtggggcaga gggaaaaggc 3060 ctaggtaatg gggatccttt gattgggacg tttcgaatgt gtggtgagct gttcagagtg 3120 tcatcactta ccatgactga cctgaatttg ttcatgacta ttgtgttctg tagcctgaga 3180 cagctgcctg tgtgggactg agatgcagga tttcttca 3218 //