Dbfetch
ID MG249973; SV 1; linear; genomic DNA; STD; HUM; 3191 BP. XX AC MG249973; XX DT 20-SEP-2018 (Rel. 138, Created) DT 20-SEP-2018 (Rel. 138, Last updated, Version 1) XX DE Homo sapiens isolate 09617 MHC class I antigen (HLA-C) gene, DE HLA-C*16:01:01:01 allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3191 RA Alizadeh M., Bennasar F., Semana G.; RT ; RL Submitted (19-OCT-2017) to the INSDC. RL LNPRM, EFS, Rue pierre Jean Gineste, Rennes, Bretagne 35016, France XX DR MD5; b0a2749094203165178ac6da4cff4181. XX CC ##Assembly-Data-START## CC Assembly Method :: Profiler HLA v. 0.0.0.1 Rev2.0.207 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3191 FT /organism="Homo sapiens" FT /isolate="09617" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene 1..3191 FT /gene="HLA-C" FT /allele="HLA-C*16:01:01:01" FT mRNA join(1..305,436..705,952..1227,1815..2090,2212..2331, FT 2771..2803,2911..2958,3123..3191) FT /gene="HLA-C" FT /allele="HLA-C*16:01:01:01" FT /product="MHC class I antigen" FT 5'UTR 1..232 FT /gene="HLA-C" FT /allele="HLA-C*16:01:01:01" FT CDS join(233..305,436..705,952..1227,1815..2090,2212..2331, FT 2771..2803,2911..2958,3123..3127) FT /codon_start=1 FT /gene="HLA-C" FT /allele="HLA-C*16:01:01:01" FT /product="MHC class I antigen" FT /db_xref="GOA:A0A1W1RN26" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR010579" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:A0A1W1RN26" FT /protein_id="AXY96381.1" FT /translation="MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPR FT FIAVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRN FT LRGYYNQSEAGSHTLQWMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTA FT AQITQRKWEAARAAEQQRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLVSDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGG FT KGGSCSQAASSNSAQGSDESLITCKA" FT 3'UTR 3128..3191 FT /gene="HLA-C" FT /allele="HLA-C*16:01:01:01" XX SQ Sequence 3191 BP; 593 A; 937 C; 996 G; 665 T; 0 other; caagggccgt gtctgcactg gggaggcgcc gcgttgagga ttctccactc ccctgagttt 60 cacttcttct cccaacctgc gtcgggtcct tcttcctgaa tactcatgac gcgtccccaa 120 ttcccactcc cattgggtgt cgggttctag agaagccaat cagcgtctcc gcagtcccgg 180 ttctaaagtc cccagtcacc cacccggact cggattctcc ccagacgccg agatgcgggt 240 catggcgccc cgaaccctca tcctgctgct ctcgggagcc ctggccctga ccgagacctg 300 ggcctgtgag tgcggggttg ggagggaaac ggcctctgcg gagaggagcg aggggcccgc 360 ccggcgaggg cgcaggaccc ggggagccgc gcagggagga gggtcgggcg ggtctcagcc 420 cctcctcgcc cccaggctcc cactccatga ggtatttcta caccgccgtg tcccggcccg 480 gccgcggaga gccccgcttc atcgcagtgg gctacgtgga cgacacgcag ttcgtgcggt 540 tcgacagcga cgccgcgagt ccaagagggg agccgcgggc gccgtgggtg gagcaggagg 600 ggccggagta ttgggaccgg gagacacaga agtacaagcg ccaggcacag actgaccgag 660 tgagcctgcg gaacctgcgc ggctactaca accagagcga ggccggtgag tgaccccggc 720 ccggggcgca ggtcacgacc cctccccatc ccccacggac ggcccgggtc gccccgagtc 780 tcccggtctg agatccaccc cgaggctgcg gaacccgccc agaccctcgg ccggagagag 840 ccccagtcac ctttacccgg tttcattttc agtttaggcc aaaatccccg cgggttggtc 900 ggggctgggg cggggctcgc gggacggggc tgaccacggg ggcggggcca gggtctcaca 960 ccctccagtg gatgtatggc tgcgacctgg ggcccgacgg gcgcctcctc cgcgggtatg 1020 accagtccgc ctacgacggc aaggattaca tcgccctgaa cgaggacctg cgctcctgga 1080 ccgccgcgga cacggcggct cagatcaccc agcgcaagtg ggaggcggcc cgtgcggcgg 1140 agcagcagag agcctacctg gagggcacgt gcgtggagtg gctccgcaga tacctggaga 1200 acgggaagga gacgctgcag cgcgcgggta ccaggggcag tggggagcct tccccatctc 1260 ctgtagatct cccgggatgg cctcccacga ggaggggagg aaaatgggat cagcgctaga 1320 atatcgccct cccttgaatg gagaatggga tgagttttcc tgagtttcct ctgagggccc 1380 cctctgctct ctaggacaat taagggatga agtccttgag gaaatggagg ggaagacagt 1440 ccctggaata ctgatcaggg gtcccctttg accactttga ccactgcagc agctgtggtc 1500 aggctgctga cctttctctc aggccttgtt ctctgcctca tgctcaatgt gtttgaaggt 1560 ttgattccag cttttctgag ttcttcagcc tccactcagg tcaggaccag aagtcgctgt 1620 tcctccctca gagactagaa ctttccaatg aataggagat tatcccaggt gcctgtgtcc 1680 aggctggcgt ctgggttctg tgcccccttc cccaccccag gtgtcctgtc cattctcagg 1740 atggtcacat gggcgctgtt ggagtgtcgc aagagagata caaagtgtct gaattttctg 1800 actcttcccg tcagaacacc caaagacaca cgtgacccac catctcgtct ctgaccatga 1860 ggccaccctg aggtgctggg ccctgggctt ctaccctgcg gagatcacac tgacctggca 1920 gcgggatggc gaggaccaaa ctcaggacac cgagcttgtg gagaccaggc cagcaggaga 1980 tggaaccttc cagaagtggg cagctgtggt ggtgccttct ggagaagagc agagatacac 2040 gtgccatgtg cagcacgagg ggctgccgga gcccctcacc ctgagatggg gtaaggaggg 2100 ggatgagggg tcatgtgtct tctcagggaa agcagaagtc ctggagccct tcagccgggt 2160 cagggctgag gcttgggggt cagggcccct caccttcccc tcctttccca gagccatctt 2220 cccagcccac catccccatc gtgggcatcg ttgctggcct ggctgtcctg gctgtcctag 2280 ctgtcctagg agctgtggtg gctgttgtta tgtgtaggag gaagagctca ggtagggaag 2340 gggtgaggag tggggtctgg gttttcttgt cccactggga gtttcaagcc ccaggtagaa 2400 gtgtgcccca cctcgttact ggaagcacca tccacacatg ggccatccca gcctgggacc 2460 ctgtgtgcca gcacttactc tgttgtgaag cacatgacaa tgaaggacag atgtatcacc 2520 ttgatgatta tggtgttggg gtccttgatt ccagcattca tgagtcaggg gaaggtccct 2580 gctaaggaca gaccttagga gggcagttgc tccagaaccc acagctgctt tccctgtgtt 2640 tcctgatcct gccctgggtc tgcagtcata gttctggaaa cttctcttgg gtccaagact 2700 aggaggttcc cctaagatcg catggccctg cctcctccct gtcccctcac agggcatttt 2760 cttcccacag gtggaaaagg agggagctgc tctcaggctg cgtgtaagtg atggcagtgg 2820 gcgtgtggag gagctcaccc accccataat tcctcttgtc ccacatctcc tgcgggctct 2880 gaccaggtct ttttttttgt tctaccccag ccagcaacag tgcccagggc tctgatgagt 2940 ctctcatcac ttgtaaaggt gagattctgg ggagctgaag tggtcggggg tggggcagag 3000 ggaaaaggcc taggtaatgg ggatcctttg attgggacgt ttcgaatgtg tggtgagctg 3060 ttcagagtgt catcacttac catgactgac ctgaatttgt tcatgactat tgtgttctgt 3120 agcctgagac agctgcctgt gtgggactga gatgcaggat ttcttcacac ctctcctttg 3180 tgacttcaag a 3191 //