Dbfetch
ID MF069226; SV 1; linear; genomic DNA; STD; HUM; 3441 BP. XX AC MF069226; XX DT 02-MAY-2018 (Rel. 136, Created) DT 02-MAY-2018 (Rel. 136, Last updated, Version 2) XX DE Homo sapiens isolate 1929-1940-5 MHC class II antigen (HLA-DQB1) gene, DE partial cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3441 RA Yin Y., Takemura P., Bolon Y.-T., Springer B., Saito K., Reed E.F., RA Zhang Q.J.; RT "Advances in HLA clinical relevant exon novelty detection from over 21,000 RT donor recruitment samples"; RL Unpublished. XX RN [2] RP 1-3441 RA Yin Y., Reed E.F., Bolon Y.-T., Zhang Q.J.; RT ; RL Submitted (05-MAY-2017) to the INSDC. RL Department of Pathology and Laboratory Medicine, UCLA Immunogenetics RL Center, 1000 Veteran Ave, LA, CA 90095, USA XX DR MD5; 00d415ac379553d2dc7b2a55bb5bbd72. XX CC ##Assembly-Data-START## CC Assembly Method :: GenDx NGSengine v. 2.4.0; Omixon Twin v. CC 1.0.7 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3441 FT /organism="Homo sapiens" FT /isolate="1929-1940-5" FT /mol_type="genomic DNA" FT /isolation_source="buccal-extracted" FT /db_xref="taxon:9606" FT gene <1..>3441 FT /gene="HLA-DQB1" FT mRNA join(<1..270,3160..>3441) FT /gene="HLA-DQB1" FT /product="MHC class II antigen" FT CDS join(<1..270,3160..>3441) FT /codon_start=3 FT /gene="HLA-DQB1" FT /product="MHC class II antigen" FT /db_xref="GOA:A0A2S0SYZ6" FT /db_xref="InterPro:IPR000353" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:A0A2S0SYZ6" FT /protein_id="AWB14555.1" FT /translation="DFVYQFKGMCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAV FT TLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEAL FT NHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRG FT DVYTCHVEHPSLQSPITMEW" XX SQ Sequence 3441 BP; 906 A; 789 C; 768 G; 978 T; 0 other; aggatttcgt gtaccagttt aagggcatgt gctacttcac caacgggaca gagcgcgtgc 60 gtcttgtgag cagaagcatc tataaccgag aagagatcgt gcgcttcgac agcgacgtgg 120 gggagttccg ggcggtgacg ctgctggggc tgcctgccgc cgagtactgg aacagccaga 180 aggacatcct ggagaggaaa cgggcggcgg tggacagggt gtgcagacac aactaccagt 240 tggagctccg cacgaccttg cagcggcgag gtgagcggcg tcgcccctct gcgaggccca 300 cccttggccc caagtctctg cgccaggagg ggcgaagggt cgtggcctct ggaacctgag 360 ccccgtttgt tccaccccag aggacaggag gcagcggcga gagtggtggg ggcaggtgca 420 tcggaggtgc ggggacctag ggcagagcag ggggacaggc agagttggcc aggctgccta 480 gtgtcgcccc agcctacccg ttcgtcggcc ttgtcctctg ctctgcatgt tcttgcctcg 540 tgccttatgc atttgcctcc ttttgcctta cctttgctaa gcagctctct ctgctcagaa 600 tgcccgccct cttcccctgc ccgcccgccc gccccactag cactgcccca cccagcaagg 660 cccacgtgca cagctcttgc agcaggaagc ttcaggctta gcctggtgga gttagggctg 720 ttccacaact gcgcgcagga cattcagcaa ttacagttgt gaaataagat attttaactt 780 ttggcttcaa atcattattc atcgtaattc tgttttctta aatggctctc attcatggca 840 gagatctttg aggtgagggt gttttaatca ttgcatgcct agtacctgac acattgactg 900 gtatgtggtg tgagctcaat gatcttctgt taaattaatg aataaatgta ctcagctgcc 960 catccactta ggctcaagaa aaaaaaagag gtaaacagag ccttaaaaat ggactttatt 1020 aattattttc tataattttg cttaatgctt taaagtaaac tcttattgac ttggatctta 1080 atagagtttg tgaatacaaa atctgaggaa aaaagttttt gctaaaaata aaaacaacgc 1140 ttgaaagata ttgtaaggca gtttaaattt cttttctttt cttttttttt tttttttgag 1200 acggattctc actctgtcgc ccaggccgga gtgcagtggc gcgatctcgg ctcactgcaa 1260 gctccgcctc ccgggttcac gccattctcc tgcctcagcc tcctgagtag gtgggattac 1320 aggcgcgtgc caccacgccc ggctaatttt tttgtatttt tagtagaggc ggggtttcac 1380 cgtgttagcc aggatggtct ggatctcctg acctcatgat ccgcccgcct cggcctccca 1440 aagtgctggg attacaggtg tgagccacag tgcccggccg gcacttttaa tttcttagaa 1500 aagctgaaca aatggcacaa tgcaaagagc aaaagttttg gaataaatag attgaagcca 1560 ttaaattatt ggataaaaat agtttcgggt tgcttttggc ctaggttctc ccctcccccc 1620 atgactatcc acttcaggaa taaacattct gaaagtcaat tttacccatt tagtgagcat 1680 ttatttctag acagttgcct tatcaaatac catctatgtt acgtcattta atctcacagt 1740 tacttgtgca tcagagatta gcatcaccac tttatatatt ggtacatgat aaacacttta 1800 ttggtcatgg atggggagat ggtcactgta ggctaatatt ggtacatgat aaacacttta 1860 agtaatcagc ccataattgc tcaccaagac cttaagcctc ccaaagtaca caacattctt 1920 tgtgttcttc actacacatc catagagtct aagggacgta aagcctcgtt aaagccagtt 1980 ttgaccagaa gcagcaatga gtctattcct gtgtgttttc catgttaatg ggacaaaatg 2040 atactttcaa ggcattgaaa attcatgatt aatcaatccc tagtctgacc ccagtgttat 2100 ctatgcaggt ttgcaaaacc tttagtttac ttaatactcc cttgccttct tttgattcac 2160 atcctaatgc cagcaaatac ttatgttttt gctatttcag ttccatttcc ataaaattta 2220 ttttatcatc ttttctcata aatttatgcc ctctattttt actcccaatc tgtttaagat 2280 gaacaaatct tataaggcca catagctgac tgttatttct gttggactcc aggaaggaga 2340 acctaaagaa aagttcaagt ccaagcagaa accgtgattt cttccagatg atggctcatg 2400 agtgccattt aattggggtg ccacctggtg acctcagcaa atcccagcta tatttatgtg 2460 ttcacattac aggatcatta acccagaccg accactgcac agatctcaga atattttcta 2520 tggagaacat acataataat gcctgatttc agaagaagaa agtaattctc aatagcaagg 2580 ggatggagta gggtagacag ctgtaattaa actcacttgt gtgataaaaa gaaattaagg 2640 aaaaaagaaa atgagagaac atattactaa ataaagaaag catacattaa atatttacta 2700 tagtttcaca ctaagagaat aaaggaaatg caataaagtg gcctgaaagg taaaggatga 2760 gatgtgtaaa ggggtgtagt atttttacta tgagcagcaa tctgagaaga taaaggaatc 2820 gagttacggg caaacatgat gtttgatcag tgttatttgt tttcaaggcc tgcctaaatt 2880 tttttcaaat attacaaact tttgaaataa cattcttttt gttttttgct gtctgttact 2940 aggttgcaca ttttataaag gcagggacca tggtatgttg tttgtctttg gattctcagt 3000 gattgttata tttatatttg ttgaaggaac cttaatccaa gacttggact ccaagtatct 3060 ttccactctg gttccaagga gggaccttcc tcacagcagg catgctgtgt ggtctcacat 3120 ctcactccta tatctttccc tgtctgttac tgccctcagt ggagcccaca gtgaccatct 3180 ccccatccag gacagaggcc ctcaaccacc acaacctgct ggtctgctcg gtgacagatt 3240 tctatccagc ccagatcaaa gtccggtggt ttcggaatga ccaggaggag acagctggcg 3300 ttgtgtccac cccccttatt aggaatggtg actggacctt ccagatcctg gtgatgctgg 3360 aaatgactcc ccagcgtgga gacgtctaca cctgccacgt ggagcacccc agcctccaga 3420 gccccatcac catggagtgg c 3441 //