Dbfetch
ID LT963706; SV 1; linear; genomic DNA; STD; HUM; 7047 BP. XX AC LT963706; XX PR Project:PRJEB22131; XX DT 22-OCT-2018 (Rel. 138, Created) DT 22-OCT-2018 (Rel. 138, Last updated, Version 1) XX DE Homo sapiens HLA-DQB1 gene for MHC class II antigen, allele DE HLA-DQB1*04:02:01:NEW XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RA Turner R T.; RT ; RL Submitted (24-NOV-2017) to the INSDC. RL ANTHONY NOLAN RESEARCH INSTITUTE, The Royal Free Hospital, Pond Street, RL London, NW3 2QU, United Kingdom XX DR MD5; d927da21428c5d4bf07f61936c897fbd. XX FH Key Location/Qualifiers FH FT source 1..7047 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /clone="SPL" FT /db_xref="taxon:9606" FT CDS join(410..518,1973..2242,4773..5054,5570..5680,6150..6173, FT 6784..6797) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*04:02:01:NEW" FT /product="MHC class II antigen" FT /function="antigen presenting molecule" FT /protein_id="SOT80000.1" FT /translation="MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVFQFKG FT MCYFTNGTERVRGVTRYIYNREEYARFDSDVGVYRAVTPLGRLDAEYWNSQKDILEEDR FT ASVDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRW FT FRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRA FT QSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKGPQGPPPAGLLH" FT exon 410..518 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*04:02:01:NEW" FT /number=1 FT intron 519..1972 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*04:02:01:NEW" FT /number=1 FT exon 1973..2242 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*04:02:01:NEW" FT /number=2 FT intron 2243..4772 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*04:02:01:NEW" FT /number=2 FT exon 4773..5054 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*04:02:01:NEW" FT /number=3 FT intron 5055..5569 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*04:02:01:NEW" FT /number=3 FT exon 5570..5680 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*04:02:01:NEW" FT /number=4 FT intron 5681..6149 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*04:02:01:NEW" FT /number=4 FT exon 6150..6173 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*04:02:01:NEW" FT /number=5 FT intron 6174..6783 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*04:02:01:NEW" FT /number=5 FT exon 6784..6797 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*04:02:01:NEW" FT /number=6 XX SQ Sequence 7047 BP; 1775 A; 1629 C; 1715 G; 1928 T; 0 other; tttgccctac tgaaagaatc ccaagtataa aaacaaccag tttttaatca atattacaaa 60 gatgtttact gttgaatcgc atttttcttt ggcttcttaa aatcccttag gcattcaatc 120 ttcagctctt ctataattga gaggaagttt tcacctcaaa tgttcatcca gtgcaatttg 180 aagacgtcac agtgccaggg actgaattga gaaccttcac aaaaaaaaat gtctgcctag 240 agacagatta ggtccttcag ctccagtgct gattggttcc tttccaaagg accatccaat 300 cctgccacgc agggaaacat ccacaggttt ttattctttc tgccaggtac atcagatcca 360 tcaggtccaa gctgtgttga ctaccactac ttttcccttc gtctcaatta tgtcttggaa 420 gaaggctttg cggatccctg gaggccttcg ggtagcaact gtgaccttga tgctggcgat 480 gctgagcacc ccggtggctg agggcagaga ctctcccggt aagtgcaggg ccactgctct 540 ccagagccgc cactctggga acaggctctc cttgggctgg ggtaggggga tggtgatctc 600 catgatctcg gacacaatct ttcatcaaca tttcctctct ttggggaaag agaacgatgt 660 tgcattccca tttatctttt agtgatgagg tgagcacagt cggatcccca tcctacaggc 720 ttaagcctgg aagagaagga gagaggagag gaaagaggag acaaagtgta catttactac 780 cagtgacagg acaaagtgag catggggtta tttttgaaga tatgaatttc tccagagaca 840 cagcaggatt tgtcatttag gcgtgcccca agactttgcc tggactaaat attatgggat 900 cctgcattgg gaaatgtaag gcagcaatgg tgtctgtagt ctccgtattt gaggaaaagt 960 tgtctgtatt cctgactgac tggagcgttt gtggaggcaa aatcttggta ctgaaggaag 1020 ctgactggat gaccacagac agggagtctt caggtttcac tgatttatgg gcaaatggtg 1080 acttgagtgg gattcagaga cccgagttgg tggactgaat ttagcagaaa ggaggatgta 1140 aagaagggaa ataacatata ttgtgaaacc actcatttca gacacagcac aatactttac 1200 ataaattctc tctcactcct tctaacatcc tgtgtgtaga tatcatgatt ttcttttaca 1260 caattatact tgtgatatgg atattctgtt acatacctgc cctagctggt gactgccaca 1320 gcttaattgg aatctagttt atcaaattca aaagcttgtg ctctttccat gaataaatgt 1380 ttctttctag gactcggagg tgtaggtcct ttctaacata aaagtgagtg aacctcacat 1440 ggcattcgga agggtaaatc caggcatggg aagggaggta ttttaccgag ggaccaagag 1500 aatacgcata tcagaacgag gacaggctta atttctggac ccgtctcatc attcccttga 1560 actcccaggt ttatgtggat aattttatct ctgaggtttc caggagctca atggaaaatg 1620 ggatttcatg cgagagcgcc ctgattccct ctaagtgcag aggtctatgt aaaatcagcc 1680 cgactgcctc ttccctcggt tcacaggctc cggcagggac agggctttcc gccctttcct 1740 gcctgcagga aggcggattc cggaagcccc cagagagggc gggcagggct gggcagggct 1800 gggcagagcc gccgggcgga tcacaagtct ggagcgccag gcacgggcgg gcgggaactg 1860 gaggtcgcgc gggcggttcc acagctccgg gccgggtcag ggcggcggct gcgggggcgg 1920 ccgggctggg gccgggccgg ggcctgactg accggccggt gattccccgc agaggatttc 1980 gtgttccagt ttaagggcat gtgctacttc accaacggga ccgagcgcgt gcggggtgtg 2040 accagataca tctataaccg agaggagtac gcgcgcttcg acagcgacgt gggggtgtat 2100 cgggcggtga cgccgctggg gcggcttgac gccgagtact ggaatagcca gaaggacatc 2160 ctggaggagg accgggcgtc ggtggacacc gtatgcagac acaactacca gttggagctc 2220 cgcacgacct tgcagcggcg aggtgagcgt cgtcgcccgt ctgcgaggcc catccttggc 2280 aggggcccag agtctctgcg ccaggagggg cgaagggggc gcggcctctg gaacctgagc 2340 cttgttcgtt ccaccccggc tgacaggagg cggcggtggg ggtgctgggg gctggtgcat 2400 cggaggggca gggacctagg gcagagcagg gggacaggca gagttggtca agctgcctag 2460 tttcgcccca tcctccccgt ccgtcggcct cgccctctgc tctgcacgtt cttgcctcgt 2520 gccttatgcg tttgcctcct cgtgccttac ctttactaag cagttctctc tgcccccaat 2580 ttccgccctc ttcccctgcc cgcccgcccg gctagcactg ccgcacccgg caaggtccac 2640 ctacacagct catgcagtgg gaagcttcag acttggcctg atggagttag ggctgcccca 2700 caactgcgcg cagggcatcc agcaattaca gttgtcaaat aagatatttt gatttttgac 2760 ttcaaattat tattcatcgt aattctgttt tcttaaatgg ctctcattca tggcggagct 2820 ctttgagatg agagtgtttt aatcattgca tgcctggtat ctgacacatt gactggcatg 2880 tggtatgagc tcaatgatct tctgttaaat taatgaataa atgtgctcag ctgccaatcc 2940 acttaggctc aagggaaagc agaggataaa tagagcctta aaaatggact tttattaatt 3000 attttctgtc attttgctta attctttaaa gtaaactctt attgacttga atcttaatag 3060 agtttgtgaa tacaaagtct gaggaaaaaa gtgtttgcta aaaataaaaa caacacttga 3120 atgatgtttg taaggcagtt ttaatttctt agaaaagctg aacaaatggc acaatgcaaa 3180 gagcagaagt tttggaataa atagattgaa gcaattaaat tattggataa aaatagtttc 3240 aggttgcttt tggcttaggt tctcccctcc ccccatcact atccacttca ggaataaaca 3300 ttctgaaagt caattttacc catttagtga gcacttattt ctagacagtt accttatcaa 3360 ataccatcta tgttacgtca tttaatctca cagttgcctg tgcattaggg attagcatca 3420 ccactttata tatcctaata ttagtacatg ataaacactt taagtaatca gcccacaagt 3480 actcaccaag accttaagcc tcccaaagta cacaatattc tttatgttct tcactacaca 3540 tctatagagt caaagggaca caaagccttg ttaaagccag ttttgactag aagcagcaat 3600 gagtctcatc ctgtttgatc tccatgttaa tgggacaaaa tgatactttc aaggcattga 3660 aaatttatga ttaatcaatc cctagtctga ctccagtgtt acctatgcag attcacaaaa 3720 cttttagttt actttacact cccttgcctt cttttgactc acatcgtagt gccagcaagt 3780 acttacattt ttgctatttt ggttctattt ccataaaatt tattttatca tcttttctca 3840 taaatttgtg ccctctattt tactcccagt ctgtgtaaga tgaacaaatc ttataaggcc 3900 acatagctga ctgtgatttc aggtggactc caggaaggag aaccaaagaa aagttcaagt 3960 ccaagcagaa accgtgattc cttccggatg atggctcaag agtgcctttt aattggggtg 4020 caacctgctg acctcagcaa atctcagcta tatttatatg ttcacattac aggctcatta 4080 acctaggctg atctctgcaa ggatctcaga atattttcta cagataacat acatgataat 4140 atctgatttc aggacaaaaa agtaattctc aatagcaagg gaatggagta gggtagacag 4200 ctagtaatta aactcacttg tatgttaaaa ataaattaag gaaaaaaaga aaatgagaga 4260 acatattact aaataaagaa agcatacatt aaatatttac tatagtttca cactaagaga 4320 ataaaggaaa tgcaataaag tggcctgaaa gataaaggat gagatgtgta aagagacagg 4380 gaaagatgtg tcattttttt actatgagca gcagtctgag aagataaagg aatcgagtta 4440 tgggcaaaca tgatgtttga tcagtgctat ttgttttgaa ggcctgccta cttttgtttc 4500 aaatattaca gacttttgaa atcacattct ttttgttttt tgctgtctgt tactagatcg 4560 cacattctgt aaaggcaggg accatggtat gttgtttatc tttggattct cagtgattgt 4620 catatttata tttgttgaat gaatcttaat ccaagacttg gactccaggt atctttccac 4680 tctggttcca aggagggacc attcccaatg gtagacgtgc tgtgtggtct cacatctcac 4740 tcctgtcttt tcctgtctgt tactgccctc agtggagccc acagtgacca tctccccatc 4800 caggacagag gccctcaacc accacaacct gctggtctgc tcagtgacag atttctatcc 4860 agcccagatc aaagtccggt ggtttcggaa tgaccaggag gagacaactg gcgttgtgtc 4920 cacccccctt attaggaacg gtgactggac cttccagatc ctggtgatgc tggaaatgac 4980 tccccagcgt ggagacgtct acacctgcca cgtggagcac cccagcctcc agaaccccat 5040 catcgtggag tggcgtaagg ggatattgag tttctgttac tatgggcccc acaagacaaa 5100 gggcagagct ccttctgacc cattccttcc catctcttat ccctgatgtc actactgagc 5160 tggggatcac aggagactag agcacctctt gctccatggc aagtgcatca gaagaatcct 5220 gatctcatca cctttccaga tgctagggaa attattctat gtactgtttc tccagatccc 5280 agtcctgata gctcggaggg actgattatt agggctggtg actgggatct tagggtttaa 5340 ggtatggatg agttcctgag gagtggagat ctgcttcccc gctctctcac ctactcactg 5400 taccgaagga cctattggct ggctttcccc tcccttaggg gtggtctgaa tggaggacta 5460 ggttcctttg acactttcac ctcctgcatc tcagactgga cttcagctcc tcagcaggga 5520 tgctatgggg tgtagggaca aacactgaca ctcaggctct gcttcttagg ggctcagtct 5580 gaatctgccc agagcaagat gctgagtggc attggaggct tcgtgctggg gctgatcttc 5640 ctcgggctgg gccttattat ccatcacagg agtcagaaag gtgaggaacc ccaagggaaa 5700 aggggaagat gggctgtgac ccagaccctc tgttcaggga ggtcctgtct ctagatgtgg 5760 ctctttcctc ctgaccctga gaggaagaaa actgagctgg aggtgggagg agacaggaca 5820 agattggagg aggcattact agctgaaagg tagccctgtc acacaggtga ctgatagagc 5880 ttattccagg atgtacttac tgttcatcgt ctcattggct cctttccaaa agcttcctcc 5940 attaagaggg tcagagcctt ggcctccttg ccttctagtg acaatttcct ttgttttagg 6000 ggattttaaa ttagggtact taaggccttg aagaacatga gtggtaagag aatataactc 6060 taattaagtc acatgtgtca ttttcctttg gggtgagaga gtggctgttt gtgtaatgag 6120 acctttctct gcataacttc cttttgtaag acctcaaggg cctccaccag caggtgatat 6180 ttcagccatg agccagtgtg ggggggcaca ggtgtaagag ggaagagcat gagctgaatg 6240 cacctgacca caatggtctc tgttcatggt atatttgctg ctatgaggat caagacttag 6300 ggtcgaagtt tgccagtttc taggaatctc cagaggttgt tccccagaac caagccttaa 6360 ctttggtggt atcttcttgt gaaatgtgaa gccagaacca cagcttaaat gttagacaag 6420 aggatgatgc ccactttgtg ccacatgttg gtggctactg cctgtaggca ttttccagtg 6480 actgaaagag gctgctagtg gtagggatga ggtatcatcc aattttctaa aaagattgaa 6540 cccttcatat tccccagaag agtaacagct gttccgccac ttcccacata tctgcatcaa 6600 gctgaagttc tgtgtcctca cgagctgatt tcacctttgc acagatcttg cgggaggtga 6660 cgataataca ttctggacct cagctttctc tgtctgaagc tgcagggggc ccctgagggg 6720 tgggggagat tgcaggccca ccagcgtacc ctgtgctgat catccctctt ctctcttctt 6780 cagggctcct gcactgactc ctgagactat tttaactggg attggttatc acttttctgt 6840 aacgcctgct tgtccctgcc cagaattccc agctgcctgt gtcagcctgt ccccctgaga 6900 tcagagtcct acagtggctg tcacgcagcc accaggtcat ctcctttcat ccccacctcg 6960 aggctgatgg ctgtgaccct gcttcctgca cttacccaga gcctctgcct gtgcacggcc 7020 agctgcgtct actgaggccc caagggg 7047 //