Dbfetch
ID LT963658; SV 1; linear; genomic DNA; STD; HUM; 7028 BP. XX AC LT963658; XX PR Project:PRJEB22131; XX DT 22-OCT-2018 (Rel. 138, Created) DT 22-OCT-2018 (Rel. 138, Last updated, Version 1) XX DE Homo sapiens HLA-DQB1 gene for MHC class II antigen, allele DE HLA-DQB1*06:02:01:01 XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RA Turner R T.; RT ; RL Submitted (24-NOV-2017) to the INSDC. RL ANTHONY NOLAN RESEARCH INSTITUTE, The Royal Free Hospital, Pond Street, RL London, NW3 2QU, United Kingdom XX DR MD5; a29550d82ae2c18d20ef7c0c6593f764. XX FH Key Location/Qualifiers FH FT source 1..7028 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /clone="DO208915" FT /db_xref="taxon:9606" FT CDS join(408..516,1948..2217,4767..5048,5558..5668,6133..6156, FT 6766..6779) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:01" FT /product="MHC class II antigen" FT /function="antigen presenting molecule" FT /protein_id="SOT79952.1" FT /translation="MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKG FT MCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTR FT AELDTVCRHNYEVAFRGILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRW FT FRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRA FT QSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSQKGPQGPPPAGLLH" FT exon 408..516 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:01" FT /number=1 FT intron 517..1947 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:01" FT /number=1 FT exon 1948..2217 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:01" FT /number=2 FT intron 2218..4766 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:01" FT /number=2 FT exon 4767..5048 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:01" FT /number=3 FT intron 5049..5557 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:01" FT /number=3 FT exon 5558..5668 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:01" FT /number=4 FT intron 5669..6132 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:01" FT /number=4 FT exon 6133..6156 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:01" FT /number=5 FT intron 6157..6765 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:01" FT /number=5 FT exon 6766..6779 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:01" FT /number=6 XX SQ Sequence 7028 BP; 1774 A; 1622 C; 1701 G; 1931 T; 0 other; tttgctttat taaaaatccc aagtataata acaactggtt tttaacaata ttacagagat 60 gtttactgtt gaatcgcatt tttttctttt gcctctcaaa atccccgagg cattcgttct 120 tcagctcttc tataatcgag aggaaatttt cacctcagat gttcatccag tacaatttga 180 agacgtcaca gtgccaggca ctggattgag aaccttcaca aaaaaaatgt ctgcccagag 240 acagatgagg tccttcagct ccagtgctga ttggttcttt tccgagggac catccaatcc 300 tgccactcac ggaaacatcc acaggttttt attctttctg ccaggtacat cagatccatc 360 aggtccgagc tgtgttgact accactgctt ttcccttcgt ctcagttatg tcttggaaga 420 aggctttgcg gatccccgga gaccttcggg tagcaactgt caccttgatg ctggcgatgc 480 tgagctccct actggctgag ggcagagact ctcccggtaa gtgcagggca gctgctctcc 540 agagccgcca ctctgggaac aggctctcct tgggctgggg tatgggggat ggtgatctct 600 atgatcttgg acacaatctt tcatcaacat ttcctctctc ttgggaaaga aagctatgtt 660 gcattcccat ttatctttta gtgatgagat gaggacaatc caatccccat cctacaggct 720 taagcctgga agaggaggag agaggagaga aagaggagat aaagtgtaca tttactacca 780 gcgataggac aaagtgagca tggggttatt tttgaagata tgaatttctc caaagacaca 840 gcaggatttg tcatttaggc gtgccccaag actgcctgga cttaggatta tgagatcctg 900 cattggaaaa tgtgaggcag caatggtgtc tgtagtctct gtatttgagg aaaatttgtc 960 tctattcctg accgagtgga gcatttgtgg aggcaaaatc ttggtgctga gggaagctga 1020 ctggctgacc acagagaggg agtcttcggg tttcactgat ttatgggcaa atggtgactt 1080 gagtgggatt cagagacccg agttaatggt ggactgaatt tagtaggaag gaggatgtaa 1140 agaagggaaa taacacatat tgtgaaacca ctcacttcag acagaacaat actttatata 1200 acttctctct cactccttct aacatcctgt gtgtagatat catgattttc ttttacacaa 1260 ttatacttgt gatatggata ttctgttaca taacctgccc aaactggtga ctgccacagt 1320 ttaattggaa tctagtttat caaattcaaa agcttgtgct ctttccatga ataaatgtct 1380 ctatctagga ctcagaggtg taggtccttt ccaacataga agggagtgaa cctcaacggg 1440 acttgggagg gtaaatctag gcatgggaag gaaggtattt tacccaggga ccaagagaat 1500 acgcgtgtca gaacgaggcc aggcttaatt cctggaccta tctcgtcatt ccgttgaact 1560 ctcagattta tgtggataac tttatctctg aggtatccag gagcttcatg aaaaatggga 1620 tttcatgcga gaacgccctg atccctctaa gtgcagaggt gcatgtaaaa tcagcccgac 1680 tgcctcttcg ctgggttcac aggctcaggc agggacaggg ctttcctccc tttcctggat 1740 gtaggaaggc agattccaga agcccgcaaa gaaggcgggc agagctgggc agagccgccg 1800 ggaggatccc aggtctggag cgccaggcac gggcgggcgg gaactggagg tcgcgcgggc 1860 ggttccacag ctccaggccg ggtcagggcg gcggctgcgg gggcggccgg gctggggcct 1920 gactgaccgg ccggtgattc cccgcagagg atttcgtgtt ccagtttaag ggcatgtgct 1980 acttcaccaa cgggacggag cgcgtgcgtc ttgtgaccag atacatctat aaccgagagg 2040 agtacgcgcg cttcgacagc gacgtggggg tgtaccgcgc ggtgacgccg caggggcggc 2100 ctgatgccga gtactggaac agccagaagg aagtcctgga ggggacccgg gcggagttgg 2160 acacggtgtg cagacacaac tacgaggtgg cgttccgcgg gatcttgcag aggagaggtg 2220 agcgtcgtcg cccctccgtg aggcccaccc ttggccgaga ccccgagttt ctgtgccggg 2280 aggggcgatg ggggcgaggt ctctgaaatc tgagcccagt tcattccacc ccaggggaaa 2340 ggaggcggcg gcggggtggt gggggcaggt gcatcggagg ggcggggacc tagggcagag 2400 cagggggaca agcagagttg gccaggctgc ctagtgtccc ccccagcctc cccgtccgtc 2460 ggcctcgtcc tccgctctgc acgtttctcg cctcgtgcct tatgtgtttg cctcctcgta 2520 ccttaccttc gctaagcagt tctctctgcc cccagtgccc accctcttcc cctgcccgcc 2580 ggcctcgcta gcactgcccc acccagcaag gcccacgtgc gcagcttgcg ccgcaggaag 2640 cttcaggctt ggcctggtgg agttagggct gccccacagc tgcgcgcagg gcatccagca 2700 attacagttg cgaaataaga tattttgact ttttggcttc aaatcattat tcatcgtaat 2760 tctgttttct taaatggcta ccactaatgg cggagatctt tgaggcgaga gactgtttaa 2820 ttattgcatg cctggtacct gacacattga ctggtatgtg gtgtgagctc aatgatcttc 2880 tgttaaattc atgaataaat gtactcagct gccaatccag ttaggttcaa gaaaaaaaca 2940 gaggcttaca aatgaacttt atcaattatt ttctaacatt ttgcttaatg ctttcaagta 3000 aactcttact gacttggatc ttaatagaat ttgtgaatac aaagtctgag gaaaatgtgt 3060 ttgctaaaaa taaaaacaat gcttgaatga tgttgtaagg cagagtttta atttcttaga 3120 aaagctgaac aaatagcact atgcaaagat cagaagtttg ggaataaata ggttgaagct 3180 attaaattat tggataaaaa tagtttcagg ttgcttttgg cctaggttat cccctccccc 3240 ccatcactat ccacttcagg aataaacatt ctgaaagtca attttaccca ttcaggaagc 3300 acttatttct agacagttgc cttatcaaat accatctatg ttatgtcatt taatctcaca 3360 gctacctgtg cattagagat tagcatcacc actttatata tcctaatatt ggtacatgat 3420 aaacacttta agtaatcagc ccacaattac tcaccaagat cttaagcctc ccaaagtaca 3480 caacattctt atgttcctca ctacacatat gtagagtcta agggatgtaa ggccttgtta 3540 aagccagttt tgaccagaag cagcaatgag tctattcctg tttgttctgt gtgttaatgc 3600 ggcattgaaa attcatgatt aatcaatccc tagtctgacc ccggtgttat ctatgcaggt 3660 tcacaaaact tttagtttgc tttacactcc cttgccttct tttgactcac atcctaatgc 3720 cagcaagtac ttatattttt gctatttcag ttttatttcc ataaaattta ttttatcatc 3780 ttttctcata aatttgtgcc ctctattttt actcccagtc tgttgaagat gaacaaatct 3840 tataaggcca catagctgac tctgatttca gttggcctcc aggaaggaga acctaaagaa 3900 aagttcaagt ccaagcagaa accatgattc cttccggatg atggctcaag agtgccattt 3960 aattggggtg ccacctgctg acctcagcaa atcccagtta tatgtatatg ttcacattac 4020 aggctcatta gcccaggccg acctctgcac ggatctcaga atattttctg tggagaacat 4080 acacgataat gtctgatttc agaacaagaa agtaattgtc aatagcaagg aaatggagta 4140 gggtagacag ctagtaatta aactcacttg tgcgttaaaa agaaattaag gaaaaaaaga 4200 aaatgagaga acatattact aaataaagaa agcacacatt aaatatttgc tatagtttca 4260 cactaagaga ataaaggaaa tgtgataaag tggcctaaaa ggaaaggatg agatgtgtaa 4320 aagaggcggg gaaagatgtg tcattttttt tactatgagc agcaatctga gaagataaag 4380 gaattgagtt gtggacaaac atgatgtttg atcaagggtt atttgttttg aaggcctgcc 4440 tacttttttt tcaaatatta caaacttttg aaataacatt ctactttttt ttcaaatatt 4500 acaaactttt gaaataacat tctttttgtt ttttgctgtc tgttactaga ttgcacattc 4560 tataaatgca gggaccatag tatgttattt atctttgaat tctcagtgat tgtcaaattt 4620 atatttgttg aatgaacctt aatccaagac ttcgactcca ggtatctttc cactctggtc 4680 caaggaggga tccttcctca tggtagacgt ggtgtgtgtt ctcacatctc actcctatgt 4740 cttttcctgt ctgttactgc cctcagtgga gcccacagtg accatctccc catccaggac 4800 agaggccctc aaccaccaca acctgctggt ctgctcggtg acagatttct atccaggcca 4860 gatcaaagtc cggtggtttc ggaatgatca ggaggagaca gccggcgttg tgtccacccc 4920 ccttattagg aatggtgact ggactttcca gatcctggtg atgctggaaa tgactcccca 4980 gcgtggagat gtctacacct gccacgtgga gcaccccagc ctccagagcc ccatcaccgt 5040 ggagtggcgt aaggggatat tgagtttctg ttactatggg cccacaagac aaagagctcc 5100 ttctgaccca ttccttccca tctcttatcc ctgatgtcac tactgagctg ggaatcacag 5160 gagactagag cacctcttgc tccatggcaa gtgcatcaga agaatcctgg tctcatcacc 5220 tttccagatg ctagggaaat tactctacat actgttgctc tgaatcccag tcctgatagc 5280 tctgagggac tgattcttag ggctggtgac tgggatctta gggtctaagg ttatggatga 5340 gttcttgaag agcagagatt tgcttcccca ctctctcacc tattcactgt atccaaggac 5400 ctattggctg gtctttcccc tccttagggg tggtctgaat ggagaactag gttcctttga 5460 tgccttcacc ttctgcacct cagactggac ttcaactcct cagcagggat gctatggggt 5520 gtggggacaa acacagacac tcagttctgc tctttagggg ctcagtctga atctgcccag 5580 agcaagatgc tgagtggcgt tggaggcttc gtgctggggc tgatcttcct tgggctgggc 5640 cttatcatcc gtcaaaggag tcagaaaggt gaggaacccc aggggaaaag gggaagatgg 5700 gctgtgaccc agaccctctg ttcagagtgg tcctgtctgt agattagctc tttcctcctg 5760 accctgagaa gaagtgcgag gagacaggac aagatgggag gaggcattgg aatctgattt 5820 tactggttga aaggtagcgc tgtcacagag ctgactgata gagcttattc cagggcatcc 5880 ttaccattca tcattgtctc actggctcct ttccaaaagc ttcctccatt aagagggtca 5940 gagcctcagc ttcctttctt tctagtgaca atttcctttg ttttagggga ttttaaatta 6000 gggtgctgaa ggcctggaag aacatgggtg ggaagagaat gtaactctaa gtcatgtgtg 6060 tcattttcct ttggggtgag agagtggctg tttgtgtaat gagacctttc tctgcataac 6120 ttccttttgt aagacctcaa gggcctccac cagcaggtaa tatttcagcc atgatccagt 6180 gtggggaggc acaggtataa gagggaagag catgagctga gtgtacctga ccacagtggt 6240 ccatgttcat ggcctatttg ctgctatgag gatcaagact taggggagaa gtttgccagt 6300 ttctaggaat ctccagacat tgttccccag aaccaagcct taactttggt ggcatcttct 6360 tgtgaaatgt ggagccagaa ccacagctta aatgttagac actaggatga tgcccacttt 6420 gtgccacatg atggtggcta ctgcctgtaa gcattttcca gtgactgaaa gaggctgcta 6480 gtggtcggga agagatatca tccaatttcc taaaaagact gaacccttca tattccccag 6540 aagaataaca gctgttcccc acctcccaca catctgcatc aagctgaagt tctgtgtcct 6600 catgagctga tttcaccttt gcacagatct tgggggaggt gatgacaata caccctggac 6660 ctcaactttc tctgtctgaa gctgcagggg gcccctgaag ggtgggggag atggcaggcc 6720 caccaggata ccctgtgctg atcaatgctc ttctctcttc tccagggctt ctgcactgac 6780 tcctgagact attttaacta ggattggtta tcactcttct gtgatgcctg cttatgcctg 6840 cccagaattc ccagctgcct gtgtcagctt gtccccctga gatcaaagtc ctacagtggc 6900 tgtcacgcag ccaccaggtc atctcctttc atccccaccc caaggcgctg gctgtgactc 6960 tgcttcctgc actgacccag agcctctgcc tgtgcatggc cagctgcgtc tactcaggtc 7020 ccaagggg 7028 //