Dbfetch
ID LT898182; SV 1; linear; genomic DNA; STD; HUM; 3191 BP. XX AC LT898182; XX DT 15-AUG-2017 (Rel. 133, Created) DT 15-AUG-2017 (Rel. 133, Last updated, Version 1) XX DE Homo sapiens HLA-B gene for MHC class I antigen, allele A*03:01:01:01new XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3191 RA Voorter C.; RT ; RL Submitted (15-JUN-2017) to the INSDC. RL Transplantation Immunology, Maastricht University Medical Center, RL Transplantation Immunology, Tissue Typin, University Hospital Maastricht, P RL Debeylaan 25, 6202 AZ Maastricht, NETHERLANDS. XX RN [2] RA Groeneweg M., Matern B., Palusci F., Meertens C., Tilanus M.G.J., RA Voorter C.E.M.; RT "Group specific, unambiguous full-length gene HLA Class I typing by Sanger RT sequencing: a robust SSBT Strategy for typing and a golden reference for RT next generation sequencing approaches"; RL Unpublished. XX DR MD5; b2c6750d44138d411126016308bc43ac. DR Ensembl-Gn; ENSG00000206503; homo_sapiens. DR Ensembl-Tr; ENST00000376809; homo_sapiens. DR Ensembl-Tr; ENST00000396634; homo_sapiens. XX FH Key Location/Qualifiers FH FT source 1..3191 FT /organism="Homo sapiens" FT /chromosome="6" FT /isolate="47470" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT mRNA join(1..118,119..191,322..591,833..1108,1687..1962, FT 2065..2181,2624..2656,2799..2846,3016..3020,3021..3191) FT /gene="HLA-A" FT /allele="A*03:01:01:01new" FT /product="MHC class I antigen" FT 5'UTR 1..118 FT /gene="HLA-A" FT /allele="A*03:01:01:01new" FT /note="5'UTR" FT CDS join(119..191,322..591,833..1108,1687..1962,2065..2181, FT 2624..2656,2799..2846,3016..3020) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-A" FT /allele="A*03:01:01:01new" FT /product="MHC class I antigen" FT /db_xref="GOA:B1PKY1" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR010579" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:B1PKY1" FT /protein_id="SNQ25992.1" FT /translation="MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPR FT FIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGT FT LRGYYNQSEAGSHTIQIMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMA FT AQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPKPLTLRWELSSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRK FT GGSYTQAASSDSAQGSDVSLTACKV" FT exon 119..191 FT /gene="HLA-A" FT /allele="A*03:01:01:01new" FT /number=1 FT intron 192..321 FT /gene="HLA-A" FT /allele="A*03:01:01:01new" FT /number=1 FT exon 322..591 FT /gene="HLA-A" FT /allele="A*03:01:01:01new" FT /number=2 FT intron 592..832 FT /gene="HLA-A" FT /allele="A*03:01:01:01new" FT /number=2 FT exon 833..1108 FT /gene="HLA-A" FT /allele="A*03:01:01:01new" FT /number=3 FT intron 1109..1686 FT /gene="HLA-A" FT /allele="A*03:01:01:01new" FT /number=3 FT exon 1687..1962 FT /gene="HLA-A" FT /allele="A*03:01:01:01new" FT /number=4 FT intron 1963..2064 FT /gene="HLA-A" FT /allele="A*03:01:01:01new" FT /number=4 FT exon 2065..2181 FT /gene="HLA-A" FT /allele="A*03:01:01:01new" FT /number=5 FT intron 2182..2623 FT /gene="HLA-A" FT /allele="A*03:01:01:01new" FT /number=5 FT exon 2624..2656 FT /gene="HLA-A" FT /allele="A*03:01:01:01new" FT /number=6 FT intron 2657..2798 FT /gene="HLA-A" FT /allele="A*03:01:01:01new" FT /number=6 FT exon 2799..2846 FT /gene="HLA-A" FT /allele="A*03:01:01:01new" FT /number=7 FT intron 2847..3015 FT /gene="HLA-A" FT /allele="A*03:01:01:01new" FT /number=7 FT exon 3016..3020 FT /gene="HLA-A" FT /allele="A*03:01:01:01new" FT /number=8 FT 3'UTR 3021..3191 FT /gene="HLA-A" FT /allele="A*03:01:01:01new" FT /note="3'UTR" XX SQ Sequence 3191 BP; 611 A; 915 C; 989 G; 676 T; 0 other; ccagttctca ctcccattgg gtgtcgggtt tccagagaag ccaatcagtg tcgtcgcggt 60 cgctgttcta aagcccgcac gcacccaccg ggactcagat tctccccaga cgccgaggat 120 ggccgtcatg gcgccccgaa ccctcctcct gctactctcg ggggccctgg ccctgaccca 180 gacctgggcg ggtgagtgcg gggtcgggag ggaaaccgcc tctgcgggga gaagcaaggg 240 gccctcctgg cgggggcgca ggaccggggg agccgcgccg ggacgagggt cgggcaggtc 300 tcagccactg ctcgccccca ggctcccact ccatgaggta tttcttcaca tccgtgtccc 360 ggcccggccg cggggagccc cgcttcatcg ccgtgggcta cgtggacgac acgcagttcg 420 tgcggttcga cagcgacgcc gcgagccaga ggatggagcc gcgggcgccg tggatagagc 480 aggaggggcc ggagtattgg gaccaggaga cacggaatgt gaaggcccag tcacagactg 540 accgagtgga cctggggacc ctgcgcggct actacaacca gagcgaggcc ggtgagtgac 600 cccggccggg ggcgcaggtc aggacccctc atcccccacg gacgggccag gtcgcccaca 660 gtctccgggt ccgagatcca ccccgaagcc gcgggacccc gagacccttg ccccgggaga 720 ggcccaggcg cctttacccg gtttcatttt cagtttaggc caaaaatccc cccgggttgg 780 tcggggctgg gcggggctcg ggggactggg ctgaccgcgg ggtcggggcc aggttctcac 840 accatccaga taatgtatgg ctgcgacgtg gggtcggacg ggcgcttcct ccgcgggtac 900 cggcaggacg cctacgacgg caaggattac atcgccctga acgaggacct gcgctcttgg 960 accgcggcgg acatggcggc tcagatcacc aagcgcaagt gggaggcggc ccatgaggcg 1020 gagcagttga gagcctacct ggatggcacg tgcgtggagt ggctccgcag atacctggag 1080 aacgggaagg agacgctgca gcgcacgggt accaggggcc acggggcgcc tccctgatcg 1140 cctgtagatc tcccgggctg gcctcccaca aggaggggag acaattggga ccaacactag 1200 aatatcaccc tccctctggt cctgagggag aggaatcctc ctgggttcca gatcctgtac 1260 cagagagtga ctctgaggtt ccgccctgct ctctgacaca attaagggat aaaatctctg 1320 aaggagtgac gggaagacga tccctcgaat actgatgagt ggttcccttt gacaccggcc 1380 gcagccttgg gcccgtgact tttcctctca ggccttgttc tctgcttcac actcaatgtg 1440 tgtgggggtc tgagtccagc acttctgagt ccctcagcct ccactcaggt caggaccaga 1500 agtcgctgtt cccttctcag ggaatagaag attatcccag gtgcctgtgt ccaggctggt 1560 gtctgggttc tgtgctctct tccccatccc gggtgtcctg tccattctca agatggccac 1620 atgcgtgctg gtggagtgtc ccatgacaga tgcaaaatgc ctgaattttc tgactcttcc 1680 cgtcagaccc ccccaagaca catatgaccc accaccccat ctctgaccat gaggccaccc 1740 tgaggtgctg ggccctgggc ttctaccctg cggagatcac actgacctgg cagcgggatg 1800 gggaggacca gacccaggac acggagctcg tggagaccag gcctgcaggg gatggaacct 1860 tccagaagtg ggcggctgtg gtggtgcctt ctggagagga gcagagatac acctgccatg 1920 tgcagcatga gggtctgccc aagcccctca ccctgagatg gggtaaggag ggagatgggg 1980 gtgtcatgtc tcttagggaa agcaggagcc tctctggaga cctttagcag ggtcagggcc 2040 cctcaccttc ccctcttttc ccagagctgt cttcccagcc caccatcccc atcgtgggca 2100 tcattgctgg cctggttctc cttggagctg tgatcactgg agctgtggtc gctgccgtga 2160 tgtggaggag gaagagctca ggtggagaag gggtgaaggg tggggtctga gatttcttgt 2220 ctcactgagg gttccaagcc ccagctagaa atgtgccctg tctcattact gggaagcacc 2280 gtccacaatc atgggcctac ccagtctggg ccctgtgtgc cagcacttac tcttttgtaa 2340 agcacctgtt aaaatgaagg acagatttat caccttgatt acggcggtga tgggacctga 2400 tcccagcagt cacaagtcac aggggaaggt ccctgaggac agacctcagg agggctattg 2460 gtccaggacc cacacctgct ttcttcatgt ttcctgatcc cgccctgggt ctgcagtcac 2520 acatttctgg aaacttctct ggggtccaag actaggaggt tcctctagga ccttaaggcc 2580 ctggctcctt tctggtatct cacaggacat tttcttctca cagatagaaa aggagggagt 2640 tacactcagg ctgcaagtaa gtatgaagga ggctgatgcc tgaggtcctt gggatattgt 2700 gtttgggagc ccatggggga gcccacccac ctcacaattc ctcctctagc cacatcttct 2760 gtgggatctg accaggttct gtttttgttc taccccaggc agtgacagtg cccagggctc 2820 tgatgtgtcc ctcacagctt gtaaaggtga gagcttggag gacctaatgt gtgttgggtg 2880 ttgggcggaa cagtggacac agctgtgcta tggggtttct ttgcattgga tgtattgagc 2940 atgcgatggg ctgtttaagg tgtgacccct cactgtgatg gatatgaatt tgttcatgaa 3000 tatttttttc tatagtgtga gacagctgcc ttgtgtggga ctgagaggca agagttgttc 3060 ctgcccttcc ctttgtgact tgaagaaccc tgactttgtt tctgcaaagg cacctgcatg 3120 tgtctgtgtt cgtgtaggca taatgtgagg aggtggggag accaccccac ccccatgtcc 3180 accatgaccc t 3191 //