Dbfetch

ID   LT882769; SV 1; linear; genomic DNA; STD; HUM; 11461 BP.
XX
AC   LT882769;
XX
DT   09-JUN-2017 (Rel. 133, Created)
DT   21-JUL-2017 (Rel. 133, Last updated, Version 2)
XX
DE   Homo sapiens, HLA-DPB1 pseudogene, cell line DKMS-LSL-DPB1-1744, allele
DE   HLA-DPB1*11:new
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-11461
RA   Albrecht V.;
RT   ;
RL   Submitted (06-JUN-2017) to the INSDC.
RL   Research and Development, DKMS LIFE SCIENCE LAB, Fiedler Str. 43, Saxony,
RL   01307 Dresden, GERMANY.
XX
RN   [2]
RX   DOI; https://doi.org/10.1111/tan.13057.
RX   PUBMED; 28547825.
RA   Albrecht V., Zweiniger C., Surendranath V., Lang K., Schofl G., Dahl A.,
RA   Winkler S., Lange V., Bohme I., Schmidt A.H.;
RT   "Dual redundant sequencing strategy: Full-length gene characterisation of
RT   1056 novel and confirmatory HLA alleles";
RL   HLA. -:1-9(2017).
XX
DR   MD5; dc72fd0530631af91a27c6dfeda26073.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..11461
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /cell_line="DKMS-LSL-DPB1-1744"
FT                   /db_xref="taxon:9606"
FT   exon            1..466
FT                   /gene="HLA-DPB1"
FT                   /allele="HLA-DPB1*11:new"
FT                   /number=1
FT   CDS             join(367..466,5002..5265,9216..9497,10045..10155,
FT                   10485..10504)
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="HLA-DPB1"
FT                   /allele="HLA-DPB1*11:new"
FT                   /note="MHC class II antigen null allele"
FT                   /pseudogene="allelic"
FT   intron          467..5001
FT                   /gene="HLA-DPB1"
FT                   /allele="HLA-DPB1*11:new"
FT                   /number=1
FT   exon            5002..5265
FT                   /gene="HLA-DPB1"
FT                   /allele="HLA-DPB1*11:new"
FT                   /number=2
FT   intron          5266..9215
FT                   /gene="HLA-DPB1"
FT                   /allele="HLA-DPB1*11:new"
FT                   /number=2
FT   exon            9216..9497
FT                   /gene="HLA-DPB1"
FT                   /allele="HLA-DPB1*11:new"
FT                   /number=3
FT   intron          9498..10044
FT                   /gene="HLA-DPB1"
FT                   /allele="HLA-DPB1*11:new"
FT                   /number=3
FT   exon            10045..10155
FT                   /gene="HLA-DPB1"
FT                   /allele="HLA-DPB1*11:new"
FT                   /number=4
FT   intron          10156..10484
FT                   /gene="HLA-DPB1"
FT                   /allele="HLA-DPB1*11:new"
FT                   /number=4
FT   exon            10485..11461
FT                   /gene="HLA-DPB1"
FT                   /allele="HLA-DPB1*11:new"
FT                   /number=5
XX
SQ   Sequence 11461 BP; 3102 A; 2543 C; 2966 G; 2850 T; 0 other;
     taatccctgt agatgggcca gcagaatatt tgagatcacc ttcagagcaa agaaaacgca        60
     taatctcccc aaacatcatg acttatctga ctggttaaaa tgagtatcac tgtctttcct       120
     ccgtcatctt aagtgcatca caggctttat attttcagac ctttcatact aactttctgc       180
     ctagtgagca atgactcata caaagctcag tgtccattgg ttcttttctc agactctgtc       240
     caatcccagg gtcacagaag actacttggg ttcatggtct ctaatatttc aaacaggagc       300
     tccctttagc gagtccttct tttcctgact gcagctcttt tcattttgcc atccttttcc       360
     agctccatga tggttctgca ggtttctgcg gccccccgga cagtggctct gacggcgtta       420
     ctgatggtgc tgctcacatc tgtggtccag ggcagggcca ctccaggtaa gagccgagct       480
     gccattcttg gagggtctgg ctcagggaac aattcctagg ggacgttatc tttaagggat       540
     caaattctga gacaggctgc gggggctcct gccctaaggc agtgtcctct cttcccagct       600
     agagaaagag gttcatcccc tataggatag cttgctaccc tactggccta ttctctctcc       660
     aaggacatgg gtacagtaaa cagagagagg tgcccagtgg tcagtatgct tgtctttggg       720
     gaaaatggga ccaagaggtc caggataacc ttggacagac aaggtttgca gagagagaag       780
     ttggcaagtg caggctcctg ggcgtgttca catctgcatc cagcctggag gggactcagg       840
     cagagagccc taagctggag tgtccaggct ctgaggatca ctgaggattc agtgctcacg       900
     aagaatgcct cttattcccc agggtggagc aggagcccac accccttgga caattaagga       960
     gagaagggag ggagggggat aggttttagc ccctgaaggc attctcatta aaggtacttc      1020
     tcccagcctc cccagaactt ggttagggta ctagagtggg ttgcgacttg taggaagaat      1080
     gagatgaggt tgtgtgggtg catgacaggg attgagtgta ggttatcaga cagccaagga      1140
     agcagtaacc aagtgaaaaa tctcttcttc ctgctgcctc cctgtggctg gtgtaatatt      1200
     atggcatcta tgatccattg tttttctctc aggatactct caggatattt ctttttatat      1260
     atatatatac tttaagttct agggtacatg tgcacaacgt gcaggtttgt tacatatgta      1320
     tacatgtgcc atgttggtgt gctgcaccca ttaactcgtc atttacatta ggtatatttc      1380
     ctaatgctat ccctcccccc tccccccacc ccacaacagg ccccggtgta tgatgttccc      1440
     cttcctgtgt ccatgtgttc tcattgttca gttcccacct atgagtgaga acatgtggtc      1500
     tttggttttt tgtccttgca atagtttgct gtgaatgatg gtttccagct tcctccatgt      1560
     ccctacaaag gacatgaact catccttttt tatggctgca cagtattcca tggtgtatat      1620
     gtgtgcattt tcttaatcca gtctatcact gatggacagt tgggttggtt ccaagtcttt      1680
     gctattgtga atagtgccgc tataaacata tgtgtgcatg tgtctttata gcagcatgat      1740
     ttataatcct ttgggtatat acccagtaat gggatggctg ggtcaaatgg tatttctagt      1800
     tctagatcct tgaggaattg ccacactgtc ttgagatacc atctcacacc agttaaaatg      1860
     gcgatcatta aaaagtcagg aaacaacagg tgctggagag gatgtggaga aataggaaca      1920
     cttttactct gttggtggga ctgtaaacta gttcaaccat tgtactctca ggacatttct      1980
     agtccaaatt tacaccaaca ctctgagagg aaggactgca aagtaggtac cttagttttc      2040
     cactgacttc cacttttcct gcttacaccc ttcctcctag acctctccac acccctccta      2100
     ggacacacct agaaggtact gacatcatgt cacctcctca tctttcaggg tagcaaggtt      2160
     ggaatctcct gaatacagcc cctcaagccc taaaacctct tatctattac cttgggttca      2220
     ttgtccagga aggggaggag aacttgaact tgtagtcaca gaagggtgct gagaactaac      2280
     cagcaggacg gctcagccct gggaactgca gaggggtgag gctggggaga gaggaggctg      2340
     gagcagcact ggtgacactg aacagtgtca ggaggaagtg acggatgcag cgcccccatc      2400
     ccataggcag agctgtcatg tgggatgagg gacagtgttg ggagccacca aggaaaccca      2460
     gaggtggggg agcagagagc agaagggggc atgtgatgct gggcagtgaa agggaggaca      2520
     ggcaaaggct gggttgaggt ttgtaggggg aatgagatga ggcagtggag ccatgtgaca      2580
     gggactgagg gtagattact ggagctccct gcgtagaatg aatgttcaat caaaacctgc      2640
     tggagggaga gctggagcca taggggagtg ggtaaagtgg gcagggttga ttccacaatt      2700
     ccctgcatgc tcccccaact ccacacacat ccccaacctc aaacagggca caagaccaaa      2760
     gggctgagga gccaggctat agcttaaaga ggctggggga gaaaagcttg gctgagacaa      2820
     cccataggga gctagaggtt tttaatatat cctattctga ataagagacg aattcattca      2880
     gatcagtggt ttcaaaccgt gctctgggca actcaattgc taagggttcc acaaacagga      2940
     taaagtttct tatatacaaa aaaaatgaag gtttcaaatt acaccataaa acccctcatt      3000
     gcttatgtct acttggcagg taaaattcca tttcaaaagt taaatgtact taaaaaatta      3060
     cctaagactg ggtaaattaa aaaaattaaa tgttgcaaag aaaaaattca aaattcttat      3120
     tcttgaatga aaaacgttct cttactggtg attgaggagg agaaacaaag actaacaaat      3180
     gaaaatggga gaatccacac tcagagtggg gcaattgaac aggcaggggc ggatggatgg      3240
     cagaggagga ggaatctgga ctcaaggagc tggggggctc tgggcctgga atttcagggt      3300
     ctggggccca aggcaccagg agaagaggca ggtcaggata tctgagtcaa gacctgggat      3360
     cttgccttag caatgacact ggagactaaa ggtggactcc atggtgccct tgagcccagc      3420
     cctaccccat ctccactatc ctctgccacc agctgtgcaa cttctgctag gggtgaggtt      3480
     aataaactgg agaagttaat ttgtggagca tgaaacagat gagcagaaca atcacagcac      3540
     cttaatttcc ccagtgtgcc caagaacaga gcaggcctga agacactcaa acagaaacaa      3600
     acatgtgccg tgtcactgat aattctgtgt agacacacac ctgccagaca ctgctcatgg      3660
     cactccctag gaagaacagc atgtgggaaa ggctgccaaa attgttcatg taaaaattac      3720
     atcaatgctg tcttcctcgg tgctgcctat gcagctggca gccatctctt cctccacatc      3780
     atggcctccc tcagactcct catgaaggat aagatcctca aaaagaggac caacaagttc      3840
     atgaggcacc aatcagactg aaatgtcaaa attaagcata actggcggaa acccagaggt      3900
     cttaacagta gggttcgtag aaggtccaag ggccagatct tgatgcccaa cattgcttat      3960
     gggagcaaca acaacaacaa aaaacacatg ctgcccagtg gcttccagaa gtttctggcc      4020
     cacagcctca aggagctgaa agtgctgctg atgtgcaaca aatcttactg tgctgagatc      4080
     gctcacaaaa tttcctccag aactgcaaag tcatcatgga aagagtcacc cagccggcca      4140
     tcagagtcac caaccccagt accagggtgc acagctaaga aaatgagtag aaagttcatg      4200
     tccacgtttt gtgtgtaaat aaaaccataa aaactgccaa aaaaaattac atgaatgcct      4260
     ctaaacccaa aggactctac ccccacaggt ccctggttgt tgtggtgatt ttcattgtgt      4320
     aaaatacttt ccacatcttt tgacaccaag tctttctgca gccatgtttg aaaattaact      4380
     ttcaggctac agagtctttc ttataccaaa gttgaagaaa gttttaagaa atatatttct      4440
     acatctccta catgcaaaac aacaggagca agttgaggaa ttctcaagaa actggtcgag      4500
     aagagagagc gcttagctat ggaaaagaga aagaaggaag ggagggcttc ctggaggagg      4560
     tggcatttga accaggactg acatcaggat ggaaatgtca gtcagggagt taagtagggg      4620
     gagcagctcc gccctccacg tccccagctc ctcccgcccc tgttttttct cccagtgacc      4680
     ccacgtgaaa cgtctccgcc tcctccagcc accagcagaa gggactgcct tccccttagt      4740
     gctcgcccct ccctagtgat cactcagtgc ccctgagctc attcttttca gtaaattctc      4800
     tctctgcgtg gtgagaaaac aggcctggag aggctctgcg acccgcttag gaccacagaa      4860
     ctcggtacta ggaaaactcc tattttaaaa tccagccctg agtgggaaga tttgggaaga      4920
     atcgttaata ttgagagaga gagggagaaa gaggattaga tgagagtggc gcctccgctc      4980
     atgtccgccc cctccccgca gagaattacg tgtaccagtt acggcaggaa tgctacgcgt      5040
     ttaatgggac acagcgcttc ctggagagat acatctacaa ccggcaggag tacgcgcgct      5100
     tcgacagcga cgtgggagag ttccgggcgg tgacggagct ggggcggcct gctgcggagt      5160
     actggaacag ccagaaggac ctcctggagg agaggcgggc agtgccggac aggatgtgca      5220
     gacacaacta cgagctggac gaggccgtga ccctgcagcg ctgaggtgag tgagggcttt      5280
     gggccggcgg tcccagggca gccccgcggg cccgtgccca gggcgcagga gcagccgggt      5340
     tggcctaagg gaccttagtg ccgggcggaa aggggacttt gggttgggga ttcatggggg      5400
     gagcccatct ggagcttgtc aggggagcga gcgcggggac ctggactggg ctgagcatgg      5460
     agtgaggagg acgggagcag agagaccccg gggacttcat caggcctggc agctgactgc      5520
     atgtggggtg aaaaaaggaa gccacaggac agcgcacaag ggtatggtgt ggagatggag      5580
     gtggagatgg cacagcaggc cacacagaga agaaacctac agggagttag ctgggtttga      5640
     ggtgcttgag gggcagatgg gtggtctgat gggcaggtag acagaagggt ctgcagccgg      5700
     ggaggagact gagatacatg agaccatcca gggagagggg acccaggggg aagagcaaag      5760
     gactggatcc tgggaactgg acagttgtga tttggccaag acagaaaagc ctgtgaaaga      5820
     gaccaataaa acccaagtgc agtgtgagga gaggcccgca gagaagagtc ttggaagctg      5880
     aggggaggtg acctcagcag cacagtggac agcggtgcca gtgacttggg aaggtcagaa      5940
     aacagaagat ggaaagtggg tttggaaacc agggagacct ggggagagca ggttggccgc      6000
     agcggcagga gctggaatgg gagggggtgc atgaggctga gtgtggcgca tcctcctcgg      6060
     ggctgagatg gattttactt gtcttgggtt ccccacggct gtcacagggc agtgtctgag      6120
     ttcattcgtc tttttccttc aggaagtctg ggtgtaaagg gatggagaga ggtgaggtgt      6180
     gtgcagtaag aggatttctc aaggatggga caggaaggcc ttggagcttt ggcttcctcc      6240
     tgtgaacttg tggggtgggg agcctggtgc accaaccttt gggacttgag ggagtagtat      6300
     caggatgtgg gattgagccc tggacctttt ttctagaaag aggaaaaaaa tgaagggagg      6360
     aggaggagga agctggggag atcacacctt tgattttctt gttcctggaa agtgaaagga      6420
     agttcacctg ctatgagtga gaaggtggac acactgggtg gggatgaggt gagtgacatg      6480
     agcttaggaa agttgctgag gtaattggtt gagagaggtg ttcaaataaa agtaatgcaa      6540
     ttggcaaaaa ctgttactaa gactttgtag aggcacaaat cagtgacatg gcagcatctt      6600
     ctttcacagt aatcaactgc cagattgcag ggagccctga taccagccta aggagtgtga      6660
     gtttctcctc taggcccaca ggtccccaac ctcactcctc cgaagactct actggagatc      6720
     atctgtgatg cgcagatacc cagactcact gccccgagac tcagattccc tgggtgggga      6780
     ggtctgggga tctctgcttg taatcagctc cctagaggtt cccatgtagc cggataagta      6840
     ttgtcagaac actgaagatt tttgaaaaat gaaaaagaga aggttggaga tgtgtcttca      6900
     gaagactact aagggtgctg ggtagaggag ggaccagagg cagggagatg aggtaggaaa      6960
     ctgctattat ttgtcaggga aattgcaatc aagaaatgag ttagaacagg gaaaacacag      7020
     aggcagggga gaggtggaag ggggaggaaa ggagtagtga caattccagg gtgtatgctc      7080
     acccaaatct agaagtaatt gagcaaatgt tttctgggca ttagagaagg caactagaac      7140
     aaacaggaat ccttgccttg gtgaaatgta tttgaactgg gtcagaaatg aggccattgg      7200
     gtatcaagcc ttaactccag cgccccctgg aggtcgctga tgtggctcca ggctgacctg      7260
     ctcctgtcaa agaatattga gcaagatgcc tctcatggaa tgttctggga ccttaaaaca      7320
     gatacccaag tattccccct gatttcatgg ttcccagaag ctctatgggg aagaaattgt      7380
     acgtaattca caactgagat ttagacataa gttgaatagt gtaatggacg ttgagttaac      7440
     cgaggtaatg aagtagtgag acacaggtgc ccctgaaata aactcacatt gagggaagag      7500
     gctgacaatg tggatcagtc tgtaaacaag gcaaaaatac aatagggagt aagggttgtg      7560
     tgtcagttca agactgtact tttacctggc ccagcgccat gttggggtat ttgtgttctc      7620
     caggaagtag aaaggaaaga actgagtgat tagggaccta gaagactaat ttgagacatt      7680
     cctcttgatg aactgttctc tagggtagtc ctctgaaaga gctgttctct agtggatctc      7740
     cctgaatgaa ctgttctcta ggagcacttg acccttttct gtgtttgttt tttgttttgt      7800
     gtttgtgttt gtttttgaga caggttctcg ctctgtctcc caggctggag tgctgtggcg      7860
     ccatcatgac tcactgcagc ctcaacctcc tgggctcaag tgatcctcct gcctcagcct      7920
     cccatgtagc tagaactaca gatacatgta ccaccatgtc tggctaattt atttttcttt      7980
     ttagagatgg gttctcacta tgttgcccag gctggtctcg aaaccctggg ctcaagtgat      8040
     cctcacgcct cagcctccca aagtgctaag attataggca tgaccaccat gcctggcctt      8100
     ttctgccttc cgagaaggaa aaaggtactg gtggcagaga tccaaaagaa aagttgccag      8160
     tggcagtgtg gaaattgacc tgagaacaac agaacaagct ggggcacaaa tgcaaagatg      8220
     cagagggagg caacatctgg ttatctgtga gaccttcatg ggacctgaag acacatcctt      8280
     ttggaaaagg atgggatttc tactactcaa gcatgtaggg gctcaggata ttatgtaaat      8340
     atgaagattt tgagtttttg taagtgaggt aaaaaaaata cccaggttat ttacagaata      8400
     agacatgtca agctctcttc attttctttg tattttcatg aaataaaggt attagattaa      8460
     caggccacca taatgccatt gtctgtatat cttaatttca agatattatt tgagtaattt      8520
     ttgcatcctt tgtatcaaga tagaactttg aaaagacagg taatttcaca gttgattaaa      8580
     tattctttgc ccaaattact tttggttaaa atttctccta tatgtgctac agagtgcaaa      8640
     ctctgtctcc ctgccattcc gctatatact tactaattat tattttattc aagatcatgc      8700
     atgctctact tgaaggtcta tcttttcagt gctaccctta cccactagcc taatcacatt      8760
     atatctattt tcaacatcta ggaatcaatt acgtagtgaa catgcctaag aaataataat      8820
     ctgggcagat gcagtggctc aggcctgtaa tcccagcact ttgagaggct gagcgggtgg      8880
     atcacttgag gtcaggagtt ggtcaagtgc tcctagagaa ccagcctgac caacatggag      8940
     aaaccttgtc tctactgata atacaaaaat tagccaggtg aggtggcagg cacctataat      9000
     cccagctatt cgggaggctg aggaaggaga attgcttgaa cccctgaggt ggaggttgca      9060
     gtgagccaat attgcgccac tgcattccag acttggcaac agagcgacac tccacctcaa      9120
     caaaaagaaa gaaagagcga gattacgtct caaaaaagga aggaaggaag gacaatctca      9180
     aatgctattt cattattttc cttccccact cgtagtccag cctaaggtga acgtttcccc      9240
     ctccaagaag gggcccctgc agcaccacaa cctgcttgtc tgccacgtga cagatttcta      9300
     cccaggcagc attcaagtcc gatggttcct gaatggacag gaggaaacag ctggggtcgt      9360
     gtccaccaac ctgatccgta atggagactg gaccttccag atcctggtga tgctggaaat      9420
     gaccccccag cagggagacg tctacatctg ccaagtggag cacaccagcc tggacagtcc      9480
     tgtcaccgtg gagtggagtg agtctctgat gaccgtctag accccacctc tgaagagcag      9540
     gggactctct ggctctgggg tccactcatc ttatcttctg catctatacc ctggggccat      9600
     gtccaaaccc catctttctt ctataccagc tcctgagcat agtttgaagc cagggcaatg      9660
     gagacttcct gaccttggct taggggttcc tgaagattca tagttctccc ccttgtcaga      9720
     gaatctaggg acactggctg atctcgaaac cctcacacac aggaactgac ctcacacata      9780
     ggaacagttc tcttctttca gcattttagc ctcttctcag gcattttgag aggcaacttc      9840
     tagaatcagc atttgccacc ttgttgaggt cacacccctg ttccggacat gagggtggct      9900
     ctttctgaat ttcctcttag caagcttttt cccctgcact gtcttcatcc cgatattctg      9960
     catcacgctc cagaatctca gacaggacat gagtagggat gcagctggtg gaggtgacac     10020
     taaacctggg tctgtccttc ccagaggcac agtctgattc tgcccggagt aagacattga     10080
     cgggagctgg gggcttcgtg ctggggctca tcatctgtgg agtgggcatc ttcatgcaca     10140
     ggaggagcaa gaaaggtgag aaagcctgca aggtgagcgg gacctacctt cccctggcat     10200
     attcacactt actccatgat gagggttcag acagaaaaga aatgtcagaa agctctagag     10260
     accactgaaa tcagatagtc ggggaacaaa catgacctat ggcgagaggg ggatcccagg     10320
     ctgggatctt aatgcagcca gatgcatgag gtcccaggtg ctcagactcc tgcggggcat     10380
     ccattgagtg gtggtcaatg gaatttggtg ggatggaaat gtttctctaa ctatctgagg     10440
     tggtttcaat ggctgaatac ataacctttc ctctttcatt tcagttcaac gaggatctgc     10500
     ataacaggta atattcctgc tttgatttcc ttggggggtg ggttacagga ggatatgact     10560
     cctttctgtg cattgtaata ctgaggctcc tccaggaagg gaatctcagg catgaacccc     10620
     tctttcaacc tcagctctcg ggtgagtagg gaaaaagcat tgcacggctc cattgctgaa     10680
     ggaagcagag atcagttctg ttctttatca gcctaagatg cagcctctca ccataatttt     10740
     tctctcctgg acttaaagga aggaggccag caacctggga taacttgtcc tttaccccca     10800
     cagggttcct gacctcaccg aaaagactaa tgtgccttag aacaagcatt tgctgtgttt     10860
     tgttagcacc tggttccagg acagaccctc agcttcccaa gaggatactg ctgccaagaa     10920
     cttgctctga agtcagtttc tatcgttctg ctctttgatt caaagcactg tttctctcac     10980
     tgggcctcca accatgttcc cttcttctta gcaccacaaa taatcaaaac ccaacataag     11040
     tgtttgtttt cctttaaaaa tatgcatcaa atcgtctctc attactttga gggttttagt     11100
     aaacagtagg agttaataaa gaagttcatt ttggtttaca cataggaaag aagagaagca     11160
     tgaaagtgga gatatgttaa ctattgtata atgtggcctg ttatacatga cactcttctg     11220
     aattgactgt atttcagtga gctgccccca aatcaagttt agtgccctca tccatttatg     11280
     tctcagaccg ctattcttaa ctattcaatg gtgagcagac tgcaaatctg cctgatagga     11340
     cccgtattcc cacagcacta attcaacata tatcttactg agagcatgtt ttatcattac     11400
     cattaagaag ttaaatgaac atcagaattt aaaatcataa atataatcta atacacttta     11460
     a                                                                     11461
//