Dbfetch
ID LT838892; SV 1; linear; genomic DNA; STD; HUM; 3708 BP. XX AC LT838892; XX DT 12-APR-2017 (Rel. 132, Created) DT 12-APR-2017 (Rel. 132, Last updated, Version 1) XX DE Homo sapiens partial HLA-DQB1 gene for MHC class II antigen, allele DE HLA-DQB1*03 varian, exons 2-4 XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3708 RA Colom S.; RT ; RL Submitted (07-APR-2017) to the INSDC. RL HLA Laboratory, EFS Rhone Alpes,, 29 av du maquis du gresivaudan, 38701, RL 38701, 38701, FRANCE. XX RN [2] RA Masson D., Colom S.; RT "x"; RL Unpublished. XX DR MD5; 4681c9d09179a87144e87a065d861d67. XX FH Key Location/Qualifiers FH FT source 1..3708 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT CDS join(<1..270,2801..3082,3598..>3708) FT /codon_start=3 FT /transl_table=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03 varian" FT /product="MHC class II antigen" FT /function="antigen presenting molecule" FT /db_xref="GOA:A0A1W2HCC7" FT /db_xref="InterPro:IPR000353" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:A0A1W2HCC7" FT /protein_id="SMD50280.1" FT /translation="DFVYQFKGMCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAV FT TPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEAL FT NHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQRG FT DVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQK" FT exon 1..270 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03 variant" FT /number=2 FT intron 271..2800 FT /number=2 FT exon 2801..3082 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03 variant" FT /number=3 FT intron 3083..3597 FT /number=3 FT exon 3598..3708 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03 variant" FT /number=4 XX SQ Sequence 3708 BP; 970 A; 851 C; 842 G; 1045 T; 0 other; aggatttcgt gtaccagttt aagggcatgt gctacttcac caacgggacg gagcgcgtgc 60 gtcttgtgac cagatacatc tataaccgag aggagtacgc acgcttcgac agcgacgtgg 120 gggtgtatcg ggcggtgacg ccgctggggc cgcctgccgc cgagtactgg aacagccaga 180 aggaagtcct ggagaggacc cgggcggagt tggacacggt gtgcagacac aactaccagt 240 tggagctccg cacgaccttg cagcggcgag gtgagcgtcg tcgcccgtct gcgaggccca 300 tccttggcag gggcccagag tctctgcgcc aggaggggcg aagggggcgc ggcctctgga 360 acctgagcct tgttcgttcc accccggctg acaggaggag gcggtggggg tgctgggggc 420 tggtgcatcg gaggggcagg gacctagggc agagcagggg gacaggcaga gttggtcaag 480 ctgcctagtt tcgccccatc ctccccgtcc gtcggcctcg ccctctgctc tgcacgttct 540 tgcctcgtgc cttatgcgtt tgcctcctcg tgccttacct ttactaagca gttctctctg 600 cccccaattt ccgccctctt cccctgcccg cccgcccggc tagcactgcc gcacccggca 660 aggtccacct acacagctca tgcagtggga agcttcagac ttggcctgat ggagttaggg 720 ctgccccaca actgcgcgca gggcatccag caattacagt tgtcaaataa gatattttga 780 cttttgactt caaattatta ttcatcgtaa ttctgttttc ttaaatggct ctcattcatg 840 gcggagctct ttgagatgag agtgttttaa tcattgcatg cctggtatct gacacattga 900 ctggcatgtg gtatgagctc aatgatcttc tgttaaatta atgaataaat gtgctcagct 960 gccaatccac ttaggctcaa gggaaagcag aggataaata gagccttaaa aatggacttt 1020 tattaattat tttctgtcat tttgcttaat tctttaaagt aaactcttat tgacttggat 1080 cttaatagag tttgtgaata caaagtctga ggaaaaaagt gtttgctaaa aataaaaaca 1140 acacttgaat gatgtttgta aggcagtttt aatttcttag aaaagctgaa caaatggcac 1200 aatgcaaaga gcagaagttt tggaataaat agattgaagc aattaaatta ttggataaaa 1260 atagtttcag gttgcttttg gcttaggttc tcccctcccc ccatcactat ccacttcagg 1320 aataaacatt ctgaaagtca attttaccca tttagtgagc acttatttct agacagttac 1380 cttatcaaat accgtctatg ttacgtcatt taatctcaca gttgcctgtg cattagagat 1440 tagcatcacc actttatata tcctaatatt agtacatgac aaacacttta agtaatcagc 1500 ccacaagtac tcaccaagac cttaagcctc ccaaagtaca caatattctt tatgttcttc 1560 actacacatc tatagagtca aagggacata aagccttgtt aaagccagtt ttgactagaa 1620 gcagcaatga gtctcttcct gtttgatctc catgttaatg ggacaaaatg atactttcaa 1680 ggcattgaaa atttatgatt aatcaatccc tagtctgact ccagtgttac ctatgcagat 1740 tcacaaaact tttagtttac tttaaactcc cttgccttct tttgactcac atcgtagtgc 1800 cagcaagtac ttacattttt gctattttgg ttctatttcc ataaaattta ttttatcatc 1860 ttttctcata agtttgtgcc ctctatttta ctcccagtct gtgtaagatg aacaaatctt 1920 ataaggccac atagctgact gtgatttcag gtggactcca ggaaggagaa ccaaagaaaa 1980 gttcaagtcc aagcagaaac cgtgattcct tccggatgat ggctcaagag tgccttttaa 2040 ttggggtgca acctgctgac ctcagcaaat ctcagctata tttatatgtt cacattacag 2100 gctcattaac ctaggctgat ctctgcaagg atctcagaat attttctaca gataacatac 2160 atgataatat ctgatttcag gacaaaaaag taattctcaa tagcaaggga atggagtagg 2220 gtagacagct agtaattaaa ctcacttgta tgttaaaaat aaattaagga aaaaaagaaa 2280 atgagagaac atattactaa ataaagaaag catacattaa atatttacta tagtttcaca 2340 ctaagagaat aaaggaaatg caataaagtg gcctgaaaga taaaggatga gacgtgtaaa 2400 gagacaggga aagatgtgtc atttttttac tatgagcagc agtctgagaa gataaaggaa 2460 tcgagttatg ggcaaacatg atgtttgatc agtgttattt gttttgaagg cctgcctact 2520 tttgtttcaa atattacaga cttttgaaat cacattcttt ttgttttttg ctgtctgtta 2580 ctagatcgca cattctgtaa aggcagggac catggtatgt tgtttatctt tggattctca 2640 gtgattgtca tatttatatt tgttgaatga atcttaatcc aagacttgga ctccaggtat 2700 ctttccactc tggttccaag gagggaccat tcccaatggt agacgtgctg tgtggtctca 2760 catctcactc ctgtcttttc ctgtctgtta ctgccctcag tggagcccac agtgaccatc 2820 tccccatcca ggacagaggc tctcaaccac cacaacctgc tggtctgctc agtgacagat 2880 ttctatccag cccagatcaa agtccggtgg tttcggaatg accaggagga gacaactggc 2940 gttgtgtcca ccccccttat taggaacggt gactggacct tccagatcct ggtgatgctg 3000 gaaatgactc cccagcgtgg agacgtctac acctgccacg tggagcaccc cagcctccag 3060 aaccccatca tcgtggagtg gcgtaagggg atattgagtt tctgttacta tgggccccac 3120 aagacaaagg gcagagctcc ttctgaccca ttccttccca tctcttatcc ctgatgtcac 3180 tactgagctg gggatcacag gagactagag cacctcttgc tccatggcaa gtgcatcaga 3240 agaatcctga tctcatcacc tttccagatg ctagggaaat tattctacgt actgtttctc 3300 cagatcccag tcctgatagc tcggagggac ttattattag ggctggtgac tgggatctta 3360 gggtttaagg tatggatgag ttcctgagga gtggagatct gcttccccgc tctctcacct 3420 actcactata ccgaaggacc tattggctgg ctttcccctc ccttaggggt ggtctgaatg 3480 gaggactagg ttcctttgac actttcacct cctgcatctc agactggact tcagctcctc 3540 agcagggatg ctatggggtg tagggacaaa cgctgacact caggctctgc ttcttagggg 3600 ctcagtctga atctgcccag agcaagatgc tgagtggcat tggaggcttc gtgctggggc 3660 tgatcttcct cgggctgggc cttattatcc atcacaggag tcagaaag 3708 //